Wall clock time and date at job start Tue Mar 31 2020 16:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.46930 * 2 1 4 4 C 1.34779 * 119.99734 * 249.88367 * 3 2 1 5 5 O 1.21557 * 119.99589 * 184.14743 * 4 3 2 6 6 C 1.47845 * 120.00046 * 4.14854 * 4 3 2 7 7 C 1.39600 * 120.22701 * 28.64889 * 6 4 3 8 8 C 1.37742 * 119.74599 * 180.11491 * 7 6 4 9 9 C 1.38808 * 120.51213 * 0.02562 * 8 7 6 10 10 C 1.38079 * 119.99324 * 359.76163 * 9 8 7 11 11 C 1.38330 * 120.03127 * 0.05571 * 10 9 8 12 12 C 1.50776 * 121.32942 * 180.58907 * 10 9 8 13 13 C 1.52956 * 109.76905 * 342.67416 * 12 10 9 14 14 O 1.43209 * 108.46368 * 49.32033 * 13 12 10 15 15 C 1.42696 * 113.16250 * 289.31007 * 14 13 12 16 16 C 1.46494 * 120.00086 * 70.16142 * 3 2 1 17 17 C 1.53945 * 113.74202 * 222.84282 * 16 3 2 18 18 N 1.47815 * 86.03843 * 222.08379 * 17 16 3 19 19 C 1.36942 * 134.45570 * 204.64654 * 18 17 16 20 20 H 1.07997 * 119.99225 * 179.86331 * 19 18 17 21 21 C 1.38808 * 120.00156 * 359.86677 * 19 18 17 22 22 N 1.31623 * 119.99842 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00061 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47160 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47206 * 119.99530 * 23 21 19 26 26 H 1.48498 * 109.46999 * 239.99566 * 23 21 19 27 27 C 1.47581 * 91.04935 * 24.54701 * 18 17 16 28 28 H 1.08996 * 109.46844 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46910 * 299.99674 * 1 2 3 30 30 H 1.08997 * 109.46882 * 60.00303 * 1 2 3 31 31 H 1.08997 * 109.47550 * 240.00009 * 2 1 3 32 32 H 1.09004 * 109.47152 * 119.99950 * 2 1 3 33 33 H 1.08004 * 120.12675 * 0.08859 * 7 6 4 34 34 H 1.08006 * 119.74633 * 180.02562 * 8 7 6 35 35 H 1.08001 * 119.91892 * 180.09270 * 11 10 9 36 36 H 1.09008 * 109.41956 * 102.76398 * 12 10 9 37 37 H 1.09001 * 109.42211 * 222.64056 * 12 10 9 38 38 H 1.08992 * 109.63893 * 169.01547 * 13 12 10 39 39 H 1.09006 * 109.63441 * 289.63272 * 13 12 10 40 40 H 1.09003 * 109.33858 * 291.58662 * 15 14 13 41 41 H 1.09001 * 109.33597 * 172.08436 * 15 14 13 42 42 H 1.09005 * 112.94371 * 354.43489 * 16 3 2 43 43 H 1.08997 * 113.77034 * 336.34890 * 17 16 3 44 44 H 1.09000 * 113.76854 * 107.74439 * 17 16 3 45 45 H 0.96999 * 119.99721 * 180.02562 * 22 21 19 46 46 H 1.08997 * 113.77318 * 221.14825 * 27 18 17 47 47 H 1.09004 * 113.76367 * 89.75194 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.6214 1.8828 -1.0960 5 8 3.0936 3.0026 -1.0711 6 6 2.7086 1.0709 -2.3286 7 6 1.7338 0.1117 -2.6087 8 6 1.8261 -0.6408 -3.7587 9 6 2.8811 -0.4531 -4.6410 10 6 3.8457 0.4973 -4.3713 11 6 3.7620 1.2618 -3.2215 12 6 4.9972 0.7354 -5.3151 13 6 5.1389 -0.4524 -6.2683 14 8 3.8521 -0.7428 -6.8255 15 6 2.9457 -1.3089 -5.8799 16 6 1.8565 2.2154 1.1934 17 6 1.4018 3.6539 0.8871 18 7 2.3863 4.0729 1.9070 19 6 2.5165 5.1653 2.7225 20 1 3.3521 5.2343 3.4032 21 6 1.5745 6.1837 2.6744 22 7 0.5564 6.0996 1.8444 23 14 1.7525 7.6740 3.7863 24 1 2.9735 7.5275 4.6187 25 1 1.8629 8.9005 2.9563 26 1 0.5623 7.7786 4.6682 27 6 3.1706 2.8408 1.6953 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 0.9107 -0.0401 -1.9261 34 1 1.0717 -1.3827 -3.9756 35 1 4.5167 2.0057 -3.0130 36 1 4.8122 1.6423 -5.8910 37 1 5.9173 0.8511 -4.7423 38 1 5.8356 -0.1996 -7.0675 39 1 5.5050 -1.3204 -5.7200 40 1 3.2838 -2.3094 -5.6101 41 1 1.9531 -1.3740 -6.3256 42 1 1.2750 1.7286 1.9764 43 1 1.6459 3.9864 -0.1218 44 1 0.3672 3.8560 1.1643 45 1 -0.1017 6.8114 1.8105 46 1 3.5457 2.3950 2.6165 47 1 3.9354 2.9340 0.9242 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000950856636.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:10 Heat of formation + Delta-G solvation = 11.170921 kcal Electronic energy + Delta-G solvation = -28681.119269 eV Core-core repulsion = 24831.031905 eV Total energy + Delta-G solvation = -3850.087364 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.04563 -40.90780 -39.02798 -38.03169 -36.90414 -34.33415 -33.95197 -32.76221 -31.53401 -30.34695 -29.47011 -27.23517 -26.62466 -25.25252 -24.96089 -24.19238 -23.36394 -22.14994 -21.58364 -19.73312 -18.77825 -18.14591 -17.86883 -17.52078 -16.99978 -16.83444 -16.67121 -16.25187 -16.00795 -15.78138 -15.60720 -15.19448 -14.83556 -14.69540 -14.33796 -14.12010 -14.01001 -13.92920 -13.72739 -13.43102 -13.28661 -13.05339 -13.02105 -12.87500 -12.66579 -12.63038 -12.41230 -12.04461 -12.00191 -11.92382 -11.74437 -11.61308 -11.51035 -11.06149 -10.74730 -10.49794 -9.84795 -9.63439 -9.48076 -8.91870 -7.93037 -5.27069 -0.18040 0.29674 1.40705 1.44052 1.54196 1.75031 1.92408 2.46612 2.67336 2.95070 3.25171 3.42919 3.48623 3.61843 3.70527 3.80448 3.85243 3.98500 4.03894 4.20767 4.24788 4.27904 4.36194 4.43580 4.47296 4.52438 4.56452 4.59260 4.73652 4.80792 4.82717 4.85455 4.89513 4.93285 4.94701 5.00395 5.07919 5.20399 5.23196 5.26202 5.33529 5.43704 5.45822 5.47486 5.82444 5.87232 5.89421 6.15071 6.46922 6.87933 7.20396 7.56542 8.54284 9.24535 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.020743 B = 0.002801 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.554161 B = 9992.857260 C =10764.668765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.070 3.930 3 N -0.591 5.591 4 C 0.541 3.459 5 O -0.569 6.569 6 C -0.141 4.141 7 C -0.108 4.108 8 C -0.109 4.109 9 C -0.102 4.102 10 C -0.092 4.092 11 C -0.080 4.080 12 C -0.118 4.118 13 C 0.061 3.939 14 O -0.395 6.395 15 C 0.098 3.902 16 C 0.128 3.872 17 C 0.157 3.843 18 N -0.632 5.632 19 C -0.235 4.235 20 H 0.084 0.916 21 C -0.071 4.071 22 N -0.954 5.954 23 Si 0.986 3.014 24 H -0.264 1.264 25 H -0.295 1.295 26 H -0.284 1.284 27 C 0.111 3.889 28 H 0.105 0.895 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.120 0.880 32 H 0.090 0.910 33 H 0.168 0.832 34 H 0.172 0.828 35 H 0.112 0.888 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.117 0.883 39 H 0.070 0.930 40 H 0.092 0.908 41 H 0.126 0.874 42 H 0.130 0.870 43 H 0.020 0.980 44 H 0.038 0.962 45 H 0.248 0.752 46 H 0.059 0.941 47 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.139 -25.087 -15.123 29.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.050 4.050 3 N -0.323 5.323 4 C 0.331 3.669 5 O -0.449 6.449 6 C -0.144 4.144 7 C -0.126 4.126 8 C -0.127 4.127 9 C -0.103 4.103 10 C -0.092 4.092 11 C -0.099 4.099 12 C -0.155 4.155 13 C -0.016 4.016 14 O -0.313 6.313 15 C 0.022 3.978 16 C 0.023 3.977 17 C 0.030 3.970 18 N -0.359 5.359 19 C -0.364 4.364 20 H 0.101 0.899 21 C -0.264 4.264 22 N -0.603 5.603 23 Si 0.813 3.187 24 H -0.188 1.188 25 H -0.222 1.222 26 H -0.211 1.211 27 C -0.015 4.015 28 H 0.124 0.876 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.138 0.862 32 H 0.109 0.891 33 H 0.185 0.815 34 H 0.189 0.811 35 H 0.130 0.870 36 H 0.098 0.902 37 H 0.113 0.887 38 H 0.135 0.865 39 H 0.088 0.912 40 H 0.110 0.890 41 H 0.144 0.856 42 H 0.148 0.852 43 H 0.038 0.962 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.077 0.923 47 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 3.265 -24.199 -15.128 28.725 hybrid contribution 0.209 1.916 1.024 2.182 sum 3.474 -22.284 -14.104 26.600 Atomic orbital electron populations 1.22262 0.94367 1.04281 1.02261 1.22652 0.95763 0.80672 1.05925 1.47994 1.57509 1.14432 1.12339 1.18974 0.77743 0.86009 0.84150 1.90832 1.48155 1.21578 1.84365 1.19873 0.99361 0.99846 0.95353 1.22193 0.98576 0.93461 0.98342 1.21345 0.98258 1.00461 0.92613 1.20839 0.94442 0.96813 0.98166 1.19662 0.98004 0.96544 0.94997 1.21130 0.97384 0.97978 0.93426 1.21210 0.96452 1.00909 0.96928 1.22767 0.85126 0.96101 0.97572 1.88052 1.23931 1.83206 1.36147 1.21720 0.95799 0.94607 0.85715 1.23369 0.97221 0.89969 0.87100 1.22477 0.93623 0.89395 0.91461 1.46116 1.27307 1.20317 1.42136 1.19481 1.07537 0.96372 1.12991 0.89856 1.25739 0.97431 1.01675 1.01516 1.70066 1.14847 1.34327 1.41081 0.84909 0.77819 0.78314 0.77649 1.18786 1.22221 1.21085 1.22994 0.94817 0.86251 0.97445 0.87592 0.92933 0.92582 0.86231 0.89127 0.81466 0.81105 0.87035 0.90180 0.88695 0.86483 0.91168 0.89035 0.85602 0.85237 0.96210 0.94407 0.94306 0.92304 0.95034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.98 9.17 71.98 0.66 -2.32 16 2 C 0.07 1.42 5.61 86.38 0.48 1.90 16 3 N -0.59 -19.34 2.80 -806.87 -2.26 -21.60 16 4 C 0.54 20.45 6.88 86.79 0.60 21.05 16 5 O -0.57 -28.16 12.39 -3.90 -0.05 -28.21 16 6 C -0.14 -4.10 5.48 -20.13 -0.11 -4.21 16 7 C -0.11 -2.17 7.40 22.48 0.17 -2.01 16 8 C -0.11 -1.61 9.65 22.29 0.22 -1.39 16 9 C -0.10 -1.73 5.82 -19.76 -0.11 -1.84 16 10 C -0.09 -1.99 5.77 -19.86 -0.11 -2.11 16 11 C -0.08 -2.25 9.22 22.57 0.21 -2.05 16 12 C -0.12 -2.00 6.00 29.86 0.18 -1.82 16 13 C 0.06 0.77 6.85 71.97 0.49 1.26 16 14 O -0.39 -6.40 10.80 -148.98 -1.61 -8.01 16 15 C 0.10 1.15 6.65 71.24 0.47 1.62 16 16 C 0.13 5.18 4.27 46.75 0.20 5.38 16 17 C 0.16 8.52 6.79 86.44 0.59 9.11 16 18 N -0.63 -36.54 3.70 -716.64 -2.65 -39.19 16 19 C -0.24 -14.47 10.70 84.03 0.90 -13.57 16 20 H 0.08 4.88 7.83 -2.91 -0.02 4.86 16 21 C -0.07 -4.36 5.50 84.86 0.47 -3.89 16 22 N -0.95 -62.04 11.39 21.65 0.25 -61.79 16 23 Si 0.99 48.74 29.55 68.60 2.03 50.77 16 24 H -0.26 -12.19 7.11 99.48 0.71 -11.48 16 25 H -0.29 -14.67 7.11 99.48 0.71 -13.97 16 26 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 27 C 0.11 5.21 8.27 86.49 0.72 5.93 16 28 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.05 1.10 7.68 -2.39 -0.02 1.08 16 30 H 0.06 1.05 6.92 -2.39 -0.02 1.03 16 31 H 0.12 1.99 4.03 -2.39 -0.01 1.98 16 32 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 33 H 0.17 2.79 3.16 -2.91 -0.01 2.78 16 34 H 0.17 1.10 8.06 -2.91 -0.02 1.07 16 35 H 0.11 3.50 7.90 -2.91 -0.02 3.48 16 36 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 37 H 0.09 1.42 8.14 -2.39 -0.02 1.41 16 38 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.07 0.71 8.07 -2.38 -0.02 0.69 16 40 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.13 4.60 7.77 -2.38 -0.02 4.59 16 43 H 0.02 1.23 5.69 -2.39 -0.01 1.21 16 44 H 0.04 2.23 7.17 -2.39 -0.02 2.21 16 45 H 0.25 15.49 8.31 -92.71 -0.77 14.72 16 46 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 47 H 0.03 1.62 6.32 -2.38 -0.02 1.60 16 Total: -1.00 -86.27 366.01 2.70 -83.57 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: 0.99 Total: 13.40 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: 6.01 Total: 11.05 kcal Atomic # 7 Polarization: -117.91 SS G_CDS: -4.67 Total: -122.58 kcal Atomic # 8 Polarization: -34.56 SS G_CDS: -1.66 Total: -36.22 kcal Atomic # 14 Polarization: 48.74 SS G_CDS: 2.03 Total: 50.77 kcal Total: -86.27 2.70 -83.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950856636.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.744 kcal (2) G-P(sol) polarization free energy of solvation -86.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds