Wall clock time and date at job start Tue Mar 31 2020 16:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.47426 * 2 1 4 4 C 1.34778 * 119.99774 * 106.04521 * 3 2 1 5 5 O 1.21589 * 119.99951 * 186.71765 * 4 3 2 6 6 C 1.47534 * 120.00229 * 6.72144 * 4 3 2 7 7 C 1.39529 * 120.05334 * 325.59808 * 6 4 3 8 8 C 1.37779 * 120.18703 * 180.09799 * 7 6 4 9 9 C 1.38642 * 119.97807 * 359.77359 * 8 7 6 10 10 C 1.37652 * 120.31698 * 0.23674 * 9 8 7 11 11 C 1.38878 * 120.87767 * 359.90536 * 10 9 8 12 12 O 1.35862 * 111.30727 * 179.48120 * 11 10 9 13 13 C 1.43778 * 109.25602 * 19.39017 * 12 11 10 14 14 H 1.08995 * 110.75174 * 213.89345 * 13 12 11 15 15 C 1.53001 * 110.75308 * 90.53083 * 13 12 11 16 16 C 1.51686 * 132.12683 * 181.29606 * 10 9 8 17 17 C 1.46494 * 120.00078 * 286.04546 * 3 2 1 18 18 C 1.53941 * 113.74437 * 222.79469 * 17 3 2 19 19 N 1.47810 * 86.03898 * 222.08703 * 18 17 3 20 20 C 1.36940 * 134.45775 * 204.64976 * 19 18 17 21 21 H 1.07996 * 120.00324 * 179.86021 * 20 19 18 22 22 C 1.38815 * 119.99576 * 359.85903 * 20 19 18 23 23 N 1.31616 * 120.00490 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99713 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47572 * 59.99642 * 24 22 20 26 26 H 1.48501 * 109.47370 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.46845 * 300.00045 * 24 22 20 28 28 C 1.47573 * 91.05107 * 24.54675 * 19 18 17 29 29 H 1.09000 * 109.46940 * 59.99489 * 1 2 3 30 30 H 1.08995 * 109.47341 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46814 * 299.99788 * 1 2 3 32 32 H 1.08997 * 109.46868 * 239.99773 * 2 1 3 33 33 H 1.09000 * 109.46940 * 120.00511 * 2 1 3 34 34 H 1.08005 * 119.90599 * 0.07128 * 7 6 4 35 35 H 1.08004 * 120.01064 * 179.75062 * 8 7 6 36 36 H 1.07994 * 119.84178 * 179.97438 * 9 8 7 37 37 H 1.09004 * 109.47004 * 61.44772 * 15 13 12 38 38 H 1.08995 * 109.47277 * 181.45472 * 15 13 12 39 39 H 1.09006 * 109.47158 * 301.45531 * 15 13 12 40 40 H 1.09007 * 111.09041 * 45.57579 * 16 10 9 41 41 H 1.09000 * 110.74794 * 281.91975 * 16 10 9 42 42 H 1.09004 * 112.94494 * 354.38741 * 17 3 2 43 43 H 1.09000 * 113.76871 * 336.35075 * 18 17 3 44 44 H 1.09000 * 113.77295 * 107.74441 * 18 17 3 45 45 H 0.96998 * 120.00393 * 180.02562 * 23 22 20 46 46 H 1.09004 * 113.77318 * 221.15419 * 28 19 18 47 47 H 1.08996 * 113.87441 * 89.77169 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.5472 1.9089 1.1218 5 8 2.8398 3.0885 1.1593 6 6 2.7711 1.0554 2.3041 7 6 1.8864 0.0159 2.5932 8 6 2.0917 -0.7816 3.6978 9 6 3.1827 -0.5549 4.5228 10 6 4.0617 0.4679 4.2470 11 6 3.8764 1.2884 3.1419 12 8 4.8469 2.2358 3.0623 13 6 5.9773 1.8241 3.8497 14 1 6.4689 2.6864 4.3000 15 6 6.9632 1.0173 3.0023 16 6 5.3306 0.9324 4.9361 17 6 1.9320 2.1887 -1.2192 18 6 3.1961 3.0202 -1.5029 19 7 2.2707 4.1137 -1.8673 20 6 2.3617 5.2198 -2.6694 21 1 1.5155 5.8828 -2.7729 22 6 3.5416 5.4889 -3.3493 23 7 4.5727 4.6807 -3.2235 24 14 3.6659 6.9982 -4.4429 25 1 3.4339 8.2191 -3.6300 26 1 5.0190 7.0582 -5.0519 27 1 2.6435 6.9169 -5.5168 28 6 1.2091 3.5335 -1.0221 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8899 34 1 1.0379 -0.1637 1.9495 35 1 1.4028 -1.5829 3.9211 36 1 3.3413 -1.1811 5.3882 37 1 7.3362 1.6390 2.1883 38 1 7.7977 0.6944 3.6247 39 1 6.4580 0.1437 2.5902 40 1 5.9751 0.0883 5.1817 41 1 5.0953 1.5135 5.8278 42 1 1.5773 1.6218 -2.0801 43 1 3.7936 3.2279 -0.6152 44 1 3.7887 2.6478 -2.3385 45 1 5.3973 4.8689 -3.6983 46 1 0.2181 3.5700 -1.4746 47 1 1.2199 3.8913 0.0074 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000950912047.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:32 Heat of formation + Delta-G solvation = 57.014917 kcal Electronic energy + Delta-G solvation = -29423.211703 eV Core-core repulsion = 25575.112284 eV Total energy + Delta-G solvation = -3848.099419 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.48775 -39.94200 -37.73561 -36.55767 -35.37601 -33.19196 -32.01885 -30.96759 -30.45716 -29.99501 -27.27423 -26.95967 -24.55223 -24.31399 -23.30023 -22.51532 -21.97045 -21.75689 -20.11064 -18.46109 -17.41369 -16.95041 -16.56095 -16.27512 -16.00586 -15.51376 -15.37649 -14.84928 -14.51636 -14.22484 -14.01434 -13.78464 -13.67314 -13.38066 -12.95149 -12.79332 -12.63840 -12.43850 -12.31897 -12.21156 -12.14260 -11.85488 -11.59447 -11.44105 -11.33077 -11.19819 -11.10787 -11.08337 -10.74796 -10.68495 -10.48132 -9.98460 -9.87891 -9.34371 -9.21264 -8.84737 -8.50659 -8.23876 -7.93781 -6.64357 -5.59728 -2.90005 0.88580 1.19408 3.06737 3.16870 3.34663 3.49766 3.53518 3.55191 3.75986 4.20520 4.33958 4.59396 4.63845 4.71008 4.75587 4.95914 4.98020 5.02557 5.16241 5.20166 5.21938 5.34173 5.42476 5.45211 5.46618 5.59968 5.62892 5.66637 5.73889 5.79137 5.83632 5.87963 5.97820 6.00382 6.07989 6.13848 6.22522 6.26988 6.47201 6.49350 6.74207 6.78980 7.09907 7.13085 7.44217 7.70776 7.77326 7.92964 8.14525 8.73205 9.21306 9.87551 10.80192 11.57714 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.013950 B = 0.003851 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.664498 B = 7269.312943 C = 8782.181734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.069 3.931 3 N -0.597 5.597 4 C 0.551 3.449 5 O -0.496 6.496 6 C -0.146 4.146 7 C -0.079 4.079 8 C -0.161 4.161 9 C -0.054 4.054 10 C -0.186 4.186 11 C 0.166 3.834 12 O -0.273 6.273 13 C 0.070 3.930 14 H 0.117 0.883 15 C -0.172 4.172 16 C -0.104 4.104 17 C 0.092 3.908 18 C 0.157 3.843 19 N -0.603 5.603 20 C -0.215 4.215 21 H 0.078 0.922 22 C -0.009 4.009 23 N -0.921 5.921 24 Si 0.911 3.089 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.285 1.285 28 C 0.112 3.888 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.104 0.896 34 H 0.158 0.842 35 H 0.132 0.868 36 H 0.125 0.875 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.102 0.898 43 H 0.053 0.947 44 H 0.065 0.935 45 H 0.252 0.748 46 H 0.034 0.966 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.023 -17.978 17.269 25.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.054 4.054 3 N -0.331 5.331 4 C 0.338 3.662 5 O -0.371 6.371 6 C -0.150 4.150 7 C -0.096 4.096 8 C -0.179 4.179 9 C -0.072 4.072 10 C -0.187 4.187 11 C 0.118 3.882 12 O -0.185 6.185 13 C 0.014 3.986 14 H 0.135 0.865 15 C -0.229 4.229 16 C -0.141 4.141 17 C -0.012 4.012 18 C 0.031 3.969 19 N -0.330 5.330 20 C -0.343 4.343 21 H 0.096 0.904 22 C -0.206 4.206 23 N -0.568 5.568 24 Si 0.741 3.259 25 H -0.213 1.213 26 H -0.216 1.216 27 H -0.212 1.212 28 C -0.015 4.015 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.121 0.879 34 H 0.175 0.825 35 H 0.150 0.850 36 H 0.143 0.857 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.081 0.919 40 H 0.111 0.889 41 H 0.109 0.891 42 H 0.120 0.880 43 H 0.071 0.929 44 H 0.084 0.916 45 H 0.062 0.938 46 H 0.052 0.948 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.661 -16.864 16.904 23.935 hybrid contribution 0.172 0.708 -0.440 0.851 sum -1.488 -16.156 16.464 23.115 Atomic orbital electron populations 1.22237 0.95960 1.01943 1.03106 1.22374 0.94472 0.84207 1.04312 1.47958 1.60854 1.13000 1.11290 1.18035 0.78439 0.87376 0.82367 1.90897 1.49008 1.15179 1.81977 1.19388 0.97716 1.00165 0.97735 1.21760 0.98860 0.92416 0.96608 1.20943 0.98952 1.01965 0.96066 1.20396 0.92949 0.95127 0.98748 1.20768 1.00298 1.00081 0.97520 1.19453 0.89638 0.87448 0.91676 1.87110 1.23933 1.39105 1.68312 1.23531 0.86934 0.98201 0.89896 0.86483 1.22248 0.98846 1.00753 1.01034 1.21872 0.93625 1.00018 0.98541 1.24014 1.02218 0.90350 0.84580 1.22690 0.91245 0.84615 0.98328 1.45668 1.10646 1.27171 1.49481 1.18951 0.98025 0.99848 1.17521 0.90429 1.24759 0.95822 0.99042 1.00934 1.69828 1.03106 1.37928 1.45964 0.86216 0.76669 0.82692 0.80288 1.21283 1.21645 1.21205 1.22940 0.92603 0.90299 0.95661 0.91494 0.91618 0.92242 0.91018 0.87879 0.82544 0.85041 0.85686 0.90755 0.90731 0.91941 0.88929 0.89110 0.87961 0.92944 0.91641 0.93806 0.94759 0.93128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.72 9.25 37.16 0.34 -1.38 16 2 C 0.07 0.83 5.62 -4.04 -0.02 0.81 16 3 N -0.60 -10.33 2.78 -169.13 -0.47 -10.80 16 4 C 0.55 10.70 6.80 -12.47 -0.08 10.61 16 5 O -0.50 -12.15 12.24 2.48 0.03 -12.12 16 6 C -0.15 -2.29 5.54 -104.72 -0.58 -2.87 16 7 C -0.08 -0.90 7.40 -39.27 -0.29 -1.19 16 8 C -0.16 -1.47 10.05 -39.60 -0.40 -1.87 16 9 C -0.05 -0.51 10.02 -39.65 -0.40 -0.90 16 10 C -0.19 -2.16 6.27 -104.11 -0.65 -2.81 16 11 C 0.17 2.57 6.60 -38.44 -0.25 2.32 16 12 O -0.27 -4.64 10.36 -22.12 -0.23 -4.87 16 13 C 0.07 0.80 4.32 -25.83 -0.11 0.69 16 14 H 0.12 1.12 8.14 -51.93 -0.42 0.69 16 15 C -0.17 -1.76 9.49 37.16 0.35 -1.41 16 16 C -0.10 -0.94 6.65 -26.50 -0.18 -1.12 16 17 C 0.09 1.91 4.39 -70.15 -0.31 1.60 16 18 C 0.16 4.18 6.79 -2.84 -0.02 4.16 16 19 N -0.60 -17.21 3.70 -177.89 -0.66 -17.86 16 20 C -0.22 -6.56 10.70 -15.06 -0.16 -6.72 16 21 H 0.08 2.26 7.83 -52.49 -0.41 1.85 16 22 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 23 N -0.92 -29.21 11.39 55.49 0.63 -28.58 16 24 Si 0.91 23.48 29.55 -169.99 -5.02 18.45 16 25 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 26 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 27 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 28 C 0.11 2.64 8.27 -2.97 -0.02 2.62 16 29 H 0.07 0.74 8.05 -51.93 -0.42 0.33 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.60 7.29 -51.93 -0.38 0.22 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.10 1.08 3.66 -53.66 -0.20 0.88 16 34 H 0.16 1.51 3.53 -52.48 -0.19 1.32 16 35 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 36 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.68 8.12 -51.93 -0.42 0.26 16 40 H 0.09 0.62 7.92 -51.93 -0.41 0.21 16 41 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.10 1.95 8.07 -51.93 -0.42 1.53 16 43 H 0.05 1.54 5.77 -51.93 -0.30 1.24 16 44 H 0.07 1.87 7.16 -51.93 -0.37 1.50 16 45 H 0.25 7.71 8.31 -40.82 -0.34 7.37 16 46 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.05 1.28 6.25 -51.93 -0.32 0.96 16 LS Contribution 370.06 15.07 5.58 5.58 Total: -1.00 -38.22 370.06 -9.80 -48.02 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -6.78 Total: 0.01 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: -2.88 Total: 2.17 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: -0.50 Total: -57.24 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: -0.20 Total: -16.99 kcal Atomic # 14 Polarization: 23.48 SS G_CDS: -5.02 Total: 18.45 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -38.22 -9.80 -48.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950912047.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.038 kcal (2) G-P(sol) polarization free energy of solvation -38.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds