Wall clock time and date at job start Tue Mar 31 2020 16:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.47426 * 2 1 4 4 C 1.34778 * 119.99774 * 106.04521 * 3 2 1 5 5 O 1.21589 * 119.99951 * 186.71765 * 4 3 2 6 6 C 1.47534 * 120.00229 * 6.72144 * 4 3 2 7 7 C 1.39529 * 120.05334 * 325.59808 * 6 4 3 8 8 C 1.37779 * 120.18703 * 180.09799 * 7 6 4 9 9 C 1.38642 * 119.97807 * 359.77359 * 8 7 6 10 10 C 1.37652 * 120.31698 * 0.23674 * 9 8 7 11 11 C 1.38878 * 120.87767 * 359.90536 * 10 9 8 12 12 O 1.35862 * 111.30727 * 179.48120 * 11 10 9 13 13 C 1.43778 * 109.25602 * 19.39017 * 12 11 10 14 14 H 1.08995 * 110.75174 * 213.89345 * 13 12 11 15 15 C 1.53001 * 110.75308 * 90.53083 * 13 12 11 16 16 C 1.51686 * 132.12683 * 181.29606 * 10 9 8 17 17 C 1.46494 * 120.00078 * 286.04546 * 3 2 1 18 18 C 1.53941 * 113.74437 * 222.79469 * 17 3 2 19 19 N 1.47810 * 86.03898 * 222.08703 * 18 17 3 20 20 C 1.36940 * 134.45775 * 204.64976 * 19 18 17 21 21 H 1.07996 * 120.00324 * 179.86021 * 20 19 18 22 22 C 1.38815 * 119.99576 * 359.85903 * 20 19 18 23 23 N 1.31616 * 120.00490 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99713 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47572 * 59.99642 * 24 22 20 26 26 H 1.48501 * 109.47370 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.46845 * 300.00045 * 24 22 20 28 28 C 1.47573 * 91.05107 * 24.54675 * 19 18 17 29 29 H 1.09000 * 109.46940 * 59.99489 * 1 2 3 30 30 H 1.08995 * 109.47341 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46814 * 299.99788 * 1 2 3 32 32 H 1.08997 * 109.46868 * 239.99773 * 2 1 3 33 33 H 1.09000 * 109.46940 * 120.00511 * 2 1 3 34 34 H 1.08005 * 119.90599 * 0.07128 * 7 6 4 35 35 H 1.08004 * 120.01064 * 179.75062 * 8 7 6 36 36 H 1.07994 * 119.84178 * 179.97438 * 9 8 7 37 37 H 1.09004 * 109.47004 * 61.44772 * 15 13 12 38 38 H 1.08995 * 109.47277 * 181.45472 * 15 13 12 39 39 H 1.09006 * 109.47158 * 301.45531 * 15 13 12 40 40 H 1.09007 * 111.09041 * 45.57579 * 16 10 9 41 41 H 1.09000 * 110.74794 * 281.91975 * 16 10 9 42 42 H 1.09004 * 112.94494 * 354.38741 * 17 3 2 43 43 H 1.09000 * 113.76871 * 336.35075 * 18 17 3 44 44 H 1.09000 * 113.77295 * 107.74441 * 18 17 3 45 45 H 0.96998 * 120.00393 * 180.02562 * 23 22 20 46 46 H 1.09004 * 113.77318 * 221.15419 * 28 19 18 47 47 H 1.08996 * 113.87441 * 89.77169 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.5472 1.9089 1.1218 5 8 2.8398 3.0885 1.1593 6 6 2.7711 1.0554 2.3041 7 6 1.8864 0.0159 2.5932 8 6 2.0917 -0.7816 3.6978 9 6 3.1827 -0.5549 4.5228 10 6 4.0617 0.4679 4.2470 11 6 3.8764 1.2884 3.1419 12 8 4.8469 2.2358 3.0623 13 6 5.9773 1.8241 3.8497 14 1 6.4689 2.6864 4.3000 15 6 6.9632 1.0173 3.0023 16 6 5.3306 0.9324 4.9361 17 6 1.9320 2.1887 -1.2192 18 6 3.1961 3.0202 -1.5029 19 7 2.2707 4.1137 -1.8673 20 6 2.3617 5.2198 -2.6694 21 1 1.5155 5.8828 -2.7729 22 6 3.5416 5.4889 -3.3493 23 7 4.5727 4.6807 -3.2235 24 14 3.6659 6.9982 -4.4429 25 1 3.4339 8.2191 -3.6300 26 1 5.0190 7.0582 -5.0519 27 1 2.6435 6.9169 -5.5168 28 6 1.2091 3.5335 -1.0221 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8899 34 1 1.0379 -0.1637 1.9495 35 1 1.4028 -1.5829 3.9211 36 1 3.3413 -1.1811 5.3882 37 1 7.3362 1.6390 2.1883 38 1 7.7977 0.6944 3.6247 39 1 6.4580 0.1437 2.5902 40 1 5.9751 0.0883 5.1817 41 1 5.0953 1.5135 5.8278 42 1 1.5773 1.6218 -2.0801 43 1 3.7936 3.2279 -0.6152 44 1 3.7887 2.6478 -2.3385 45 1 5.3973 4.8689 -3.6983 46 1 0.2181 3.5700 -1.4746 47 1 1.2199 3.8913 0.0074 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000950912047.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:31 Heat of formation + Delta-G solvation = 30.904072 kcal Electronic energy + Delta-G solvation = -29424.343954 eV Core-core repulsion = 25575.112284 eV Total energy + Delta-G solvation = -3849.231670 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.48560 -41.38238 -39.02684 -38.13348 -36.69761 -34.36957 -33.93796 -31.99499 -31.48347 -31.12336 -29.27384 -27.78884 -26.61604 -25.86844 -24.59305 -23.65211 -22.87379 -22.80631 -21.75781 -19.90638 -18.80232 -18.33795 -18.09601 -17.39521 -17.08516 -16.98223 -16.67877 -16.40671 -16.08034 -15.72882 -15.32909 -15.01909 -14.66803 -14.54109 -14.34254 -14.06623 -13.79405 -13.60918 -13.53581 -13.36401 -13.25631 -13.05475 -12.98377 -12.83096 -12.73131 -12.67165 -12.51245 -12.27946 -12.12629 -12.00054 -11.92834 -11.90545 -11.50426 -11.49314 -10.96239 -10.49026 -9.80636 -9.51919 -9.12119 -8.91954 -7.92535 -5.27144 -0.05517 0.32202 1.39545 1.46154 1.51931 1.80024 2.00930 2.29655 2.47230 2.73895 3.25322 3.41237 3.45414 3.50868 3.64257 3.81250 3.90884 3.96562 4.05494 4.18553 4.20536 4.24368 4.33251 4.39162 4.46940 4.55973 4.60405 4.64810 4.71867 4.80961 4.82411 4.89099 4.92110 4.98309 5.01779 5.02908 5.15341 5.18811 5.23438 5.28557 5.34995 5.40800 5.44608 5.46822 5.72764 5.85710 5.89045 6.19458 6.52957 6.87083 7.29625 7.56548 8.55045 9.24941 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.013950 B = 0.003851 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.664498 B = 7269.312943 C = 8782.181734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.062 3.938 3 N -0.595 5.595 4 C 0.543 3.457 5 O -0.566 6.566 6 C -0.180 4.180 7 C -0.078 4.078 8 C -0.144 4.144 9 C -0.042 4.042 10 C -0.186 4.186 11 C 0.125 3.875 12 O -0.327 6.327 13 C 0.054 3.946 14 H 0.125 0.875 15 C -0.165 4.165 16 C -0.091 4.091 17 C 0.129 3.871 18 C 0.156 3.844 19 N -0.631 5.631 20 C -0.240 4.240 21 H 0.084 0.916 22 C -0.070 4.070 23 N -0.956 5.956 24 Si 0.987 3.013 25 H -0.281 1.281 26 H -0.291 1.291 27 H -0.267 1.267 28 C 0.115 3.885 29 H 0.053 0.947 30 H 0.105 0.895 31 H 0.057 0.943 32 H 0.083 0.917 33 H 0.124 0.876 34 H 0.175 0.825 35 H 0.178 0.822 36 H 0.168 0.832 37 H 0.045 0.955 38 H 0.110 0.890 39 H 0.052 0.948 40 H 0.125 0.875 41 H 0.104 0.896 42 H 0.130 0.870 43 H 0.014 0.986 44 H 0.036 0.964 45 H 0.248 0.752 46 H 0.059 0.941 47 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.767 -21.443 19.157 29.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.059 4.059 3 N -0.327 5.327 4 C 0.333 3.667 5 O -0.445 6.445 6 C -0.184 4.184 7 C -0.095 4.095 8 C -0.161 4.161 9 C -0.060 4.060 10 C -0.187 4.187 11 C 0.077 3.923 12 O -0.241 6.241 13 C -0.001 4.001 14 H 0.143 0.857 15 C -0.222 4.222 16 C -0.127 4.127 17 C 0.024 3.976 18 C 0.030 3.970 19 N -0.357 5.357 20 C -0.369 4.369 21 H 0.102 0.898 22 C -0.262 4.262 23 N -0.605 5.605 24 Si 0.814 3.186 25 H -0.208 1.208 26 H -0.217 1.217 27 H -0.192 1.192 28 C -0.012 4.012 29 H 0.073 0.927 30 H 0.123 0.877 31 H 0.076 0.924 32 H 0.102 0.898 33 H 0.142 0.858 34 H 0.192 0.808 35 H 0.195 0.805 36 H 0.186 0.814 37 H 0.064 0.936 38 H 0.129 0.871 39 H 0.071 0.929 40 H 0.144 0.856 41 H 0.122 0.878 42 H 0.147 0.853 43 H 0.032 0.968 44 H 0.054 0.946 45 H 0.057 0.943 46 H 0.077 0.923 47 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -3.457 -20.402 18.812 27.966 hybrid contribution 0.724 1.721 -0.902 2.074 sum -2.733 -18.682 17.909 26.023 Atomic orbital electron populations 1.22213 0.93699 1.04292 1.02444 1.22801 0.96211 0.80887 1.06000 1.47974 1.60511 1.14788 1.09418 1.18834 0.76999 0.87104 0.83782 1.90848 1.51806 1.18355 1.83483 1.19375 1.00022 1.01921 0.97106 1.21966 0.98285 0.91316 0.97956 1.21490 0.98977 1.01581 0.94065 1.20968 0.91620 0.93935 0.99490 1.21154 1.01475 0.99838 0.96223 1.19917 0.90008 0.88671 0.93656 1.87044 1.25860 1.41208 1.69968 1.23885 0.86167 0.99438 0.90579 0.85713 1.22222 0.99655 0.99641 1.00728 1.21897 0.92770 1.00553 0.97529 1.23336 0.97208 0.90125 0.86919 1.22440 0.92823 0.86239 0.95494 1.46107 1.12436 1.27299 1.49906 1.19449 0.98611 1.00894 1.17921 0.89809 1.25763 0.95310 1.02457 1.02706 1.70068 1.03498 1.39869 1.47050 0.85035 0.76844 0.78325 0.78389 1.20752 1.21654 1.19205 1.22958 0.92871 0.91415 0.93912 0.92740 0.87664 0.92395 0.89821 0.85832 0.80828 0.80481 0.81421 0.93565 0.87100 0.92855 0.85649 0.87779 0.85279 0.96809 0.94554 0.94295 0.92313 0.95204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.80 9.25 71.98 0.67 -2.13 16 2 C 0.06 1.35 5.62 86.38 0.49 1.84 16 3 N -0.59 -21.13 2.78 -807.27 -2.24 -23.37 16 4 C 0.54 22.53 6.80 86.69 0.59 23.12 16 5 O -0.57 -30.58 12.24 -1.31 -0.02 -30.60 16 6 C -0.18 -5.79 5.54 -19.93 -0.11 -5.90 16 7 C -0.08 -1.57 7.40 22.47 0.17 -1.41 16 8 C -0.14 -1.90 10.05 22.26 0.22 -1.67 16 9 C -0.04 -0.59 10.02 22.23 0.22 -0.37 16 10 C -0.19 -3.96 6.27 -19.53 -0.12 -4.08 16 11 C 0.12 4.01 6.60 23.01 0.15 4.16 16 12 O -0.33 -12.20 10.36 -89.31 -0.93 -13.13 16 13 C 0.05 1.29 4.32 31.18 0.13 1.42 16 14 H 0.13 2.55 8.14 -2.39 -0.02 2.53 16 15 C -0.17 -3.53 9.49 71.98 0.68 -2.85 16 16 C -0.09 -1.47 6.65 30.75 0.20 -1.26 16 17 C 0.13 5.56 4.39 46.75 0.21 5.76 16 18 C 0.16 8.99 6.79 86.44 0.59 9.57 16 19 N -0.63 -37.95 3.70 -716.72 -2.65 -40.60 16 20 C -0.24 -15.23 10.70 84.03 0.90 -14.33 16 21 H 0.08 5.02 7.83 -2.91 -0.02 5.00 16 22 C -0.07 -4.39 5.50 84.86 0.47 -3.93 16 23 N -0.96 -63.88 11.39 21.65 0.25 -63.63 16 24 Si 0.99 49.73 29.55 68.60 2.03 51.76 16 25 H -0.28 -13.84 7.11 99.48 0.71 -13.13 16 26 H -0.29 -14.50 7.11 99.48 0.71 -13.80 16 27 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 28 C 0.11 5.64 8.27 86.49 0.72 6.36 16 29 H 0.05 1.07 8.05 -2.39 -0.02 1.05 16 30 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.06 1.00 7.29 -2.39 -0.02 0.98 16 32 H 0.08 1.67 8.14 -2.39 -0.02 1.66 16 33 H 0.12 2.27 3.66 -4.02 -0.01 2.25 16 34 H 0.17 2.76 3.53 -2.91 -0.01 2.75 16 35 H 0.18 0.81 8.06 -2.91 -0.02 0.79 16 36 H 0.17 0.98 8.06 -2.91 -0.02 0.96 16 37 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 38 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.05 1.21 8.12 -2.38 -0.02 1.19 16 40 H 0.13 1.18 7.92 -2.38 -0.02 1.16 16 41 H 0.10 1.40 8.14 -2.39 -0.02 1.39 16 42 H 0.13 4.88 8.07 -2.38 -0.02 4.86 16 43 H 0.01 0.92 5.77 -2.39 -0.01 0.90 16 44 H 0.04 2.25 7.16 -2.39 -0.02 2.23 16 45 H 0.25 15.95 8.31 -92.71 -0.77 15.18 16 46 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 47 H 0.03 1.62 6.25 -2.39 -0.01 1.61 16 Total: -1.00 -94.99 370.06 3.58 -91.40 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: 0.98 Total: 13.86 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: 6.17 Total: 14.31 kcal Atomic # 7 Polarization: -122.96 SS G_CDS: -4.65 Total: -127.60 kcal Atomic # 8 Polarization: -42.79 SS G_CDS: -0.94 Total: -43.73 kcal Atomic # 14 Polarization: 49.73 SS G_CDS: 2.03 Total: 51.76 kcal Total: -94.99 3.58 -91.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950912047.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.307 kcal (2) G-P(sol) polarization free energy of solvation -94.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds