Wall clock time and date at job start Tue Mar 31 2020 16:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46494 * 109.46850 * 2 1 4 4 C 1.34771 * 120.00346 * 84.24361 * 3 2 1 5 5 O 1.21280 * 120.00528 * 185.13869 * 4 3 2 6 6 C 1.50705 * 119.99914 * 4.86569 * 4 3 2 7 7 H 1.09002 * 109.43150 * 335.72084 * 6 4 3 8 8 C 1.53070 * 109.43414 * 95.58589 * 6 4 3 9 9 C 1.53416 * 108.29878 * 168.25925 * 8 6 4 10 10 O 1.42827 * 108.37578 * 295.29270 * 9 8 6 11 11 C 1.35847 * 117.85700 * 49.20434 * 10 9 8 12 12 C 1.39142 * 118.49607 * 163.02769 * 11 10 9 13 13 C 1.37974 * 120.21264 * 179.55965 * 12 11 10 14 14 C 1.38288 * 119.95702 * 0.03387 * 13 12 11 15 15 C 1.38099 * 119.98536 * 0.06964 * 14 13 12 16 16 C 1.38374 * 121.80561 * 342.73810 * 11 10 9 17 17 C 1.46509 * 119.99912 * 264.24115 * 3 2 1 18 18 C 1.53949 * 113.74107 * 36.67650 * 17 3 2 19 19 N 1.47587 * 86.11429 * 222.04704 * 18 17 3 20 20 C 1.36933 * 134.48962 * 204.63410 * 19 18 17 21 21 H 1.08000 * 120.00002 * 180.02562 * 20 19 18 22 22 C 1.38812 * 119.99861 * 0.02562 * 20 19 18 23 23 N 1.31618 * 120.00212 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99747 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47327 * 60.00022 * 24 22 20 26 26 H 1.48494 * 109.47372 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47317 * 300.00333 * 24 22 20 28 28 C 1.47583 * 91.01409 * 24.64381 * 19 18 17 29 29 H 1.09001 * 109.47197 * 174.47546 * 1 2 3 30 30 H 1.08998 * 109.47240 * 294.47221 * 1 2 3 31 31 H 1.08999 * 109.47166 * 54.47717 * 1 2 3 32 32 H 1.09001 * 109.46798 * 239.99712 * 2 1 3 33 33 H 1.08995 * 109.47291 * 120.00242 * 2 1 3 34 34 H 1.08995 * 109.70368 * 287.96470 * 8 6 4 35 35 H 1.09005 * 109.69304 * 48.56145 * 8 6 4 36 36 H 1.08994 * 109.68134 * 175.57072 * 9 8 6 37 37 H 1.08994 * 109.71345 * 55.03165 * 9 8 6 38 38 H 1.07999 * 119.89398 * 359.55297 * 12 11 10 39 39 H 1.08001 * 120.01461 * 180.02562 * 13 12 11 40 40 H 1.07997 * 120.00181 * 180.02562 * 14 13 12 41 41 H 1.07997 * 119.84015 * 179.97438 * 15 14 13 42 42 H 1.08993 * 112.94485 * 168.41469 * 17 3 2 43 43 H 1.09003 * 113.76805 * 336.34813 * 18 17 3 44 44 H 1.08996 * 113.76704 * 107.74931 * 18 17 3 45 45 H 0.96999 * 119.99753 * 179.97438 * 23 22 20 46 46 H 1.09001 * 113.76225 * 221.06001 * 28 19 18 47 47 H 1.08994 * 113.87267 * 89.67262 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1325 2.0556 1.1612 5 8 2.4471 3.2269 1.1539 6 6 1.8634 1.3559 2.4686 7 1 1.2032 0.5059 2.2958 8 6 3.1844 0.8611 3.0628 9 6 2.9273 0.4230 4.5104 10 8 2.5441 1.5720 5.2672 11 6 1.5701 2.3710 4.7589 12 6 0.9349 3.2681 5.6119 13 6 -0.0530 4.1027 5.1311 14 6 -0.4146 4.0480 3.7974 15 6 0.2122 3.1572 2.9484 16 6 1.2043 2.3167 3.4255 17 6 2.3825 2.0294 -1.2624 18 6 1.4742 1.6410 -2.4432 19 7 2.7136 1.5630 -3.2406 20 6 3.0060 1.6775 -4.5734 21 1 4.0262 1.5761 -4.9131 22 6 1.9912 1.9239 -5.4879 23 7 0.7479 2.0470 -5.0740 24 14 2.3902 2.0808 -7.3060 25 1 3.0088 0.8197 -7.7878 26 1 1.1414 2.3409 -8.0662 27 1 3.3377 3.2061 -7.5096 28 6 3.5112 1.3118 -2.0245 29 1 -0.3634 -1.0229 -0.0989 30 1 -0.3633 0.4257 0.9353 31 1 -0.3633 0.5971 -0.8364 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.5542 0.0153 2.4831 35 1 3.9186 1.6666 3.0476 36 1 3.8364 -0.0070 4.9307 37 1 2.1266 -0.3161 4.5341 38 1 1.2160 3.3113 6.6538 39 1 -0.5436 4.7982 5.7960 40 1 -1.1874 4.7012 3.4202 41 1 -0.0723 3.1161 1.9074 42 1 2.5363 3.1035 -1.1596 43 1 0.9731 0.6815 -2.3149 44 1 0.7987 2.4364 -2.7579 45 1 0.0388 2.2195 -5.7130 46 1 4.4621 1.8444 -2.0051 47 1 3.6098 0.2561 -1.7719 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000956960466.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:36 Heat of formation + Delta-G solvation = 16.115037 kcal Electronic energy + Delta-G solvation = -29142.113809 eV Core-core repulsion = 25292.240838 eV Total energy + Delta-G solvation = -3849.872971 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.22472 -39.67155 -37.74560 -37.52460 -35.15931 -34.15548 -32.08241 -30.79034 -30.33054 -30.18044 -27.81373 -26.39500 -24.86682 -24.00270 -23.49345 -23.21379 -22.44714 -20.61967 -19.52889 -18.43770 -17.88277 -17.50652 -16.76757 -16.76018 -16.10074 -15.85272 -15.12900 -14.99142 -14.70514 -14.36191 -14.04946 -13.97391 -13.76644 -13.56532 -13.43017 -13.20458 -12.95626 -12.59845 -12.44062 -12.20236 -12.03585 -11.67288 -11.57641 -11.53557 -11.26635 -11.18918 -11.02294 -10.96678 -10.91015 -10.74574 -10.68800 -10.28841 -10.11967 -9.58949 -9.43708 -8.85015 -8.83035 -8.26187 -8.18551 -6.94878 -5.82292 -3.15158 1.23404 1.38450 2.74719 3.08343 3.20880 3.37736 3.41786 3.42754 3.71258 4.28171 4.42433 4.45077 4.53487 4.61233 4.86761 4.96002 4.99736 5.03234 5.13033 5.15516 5.23790 5.28797 5.29749 5.38134 5.42761 5.43512 5.50014 5.62073 5.66861 5.78962 5.82328 5.89362 5.93725 6.04528 6.15545 6.20101 6.33488 6.39032 6.41145 6.49990 6.54982 6.68945 6.76561 7.15240 7.30392 7.31451 7.48026 7.72748 7.91985 8.41444 8.98935 9.64921 10.51694 11.34721 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.022371 B = 0.002927 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.312865 B = 9563.456988 C =10028.306251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.102 3.898 3 N -0.594 5.594 4 C 0.521 3.479 5 O -0.532 6.532 6 C -0.069 4.069 7 H 0.105 0.895 8 C -0.149 4.149 9 C 0.066 3.934 10 O -0.317 6.317 11 C 0.136 3.864 12 C -0.154 4.154 13 C -0.087 4.087 14 C -0.152 4.152 15 C -0.061 4.061 16 C -0.139 4.139 17 C 0.090 3.910 18 C 0.157 3.843 19 N -0.605 5.605 20 C -0.225 4.225 21 H 0.081 0.919 22 C -0.006 4.006 23 N -0.920 5.920 24 Si 0.914 3.086 25 H -0.285 1.285 26 H -0.289 1.289 27 H -0.283 1.283 28 C 0.108 3.892 29 H 0.065 0.935 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.111 0.889 37 H 0.066 0.934 38 H 0.128 0.872 39 H 0.127 0.873 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.115 0.885 43 H 0.035 0.965 44 H 0.075 0.925 45 H 0.255 0.745 46 H 0.046 0.954 47 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.298 -4.946 21.613 22.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.022 4.022 3 N -0.326 5.326 4 C 0.308 3.692 5 O -0.409 6.409 6 C -0.090 4.090 7 H 0.122 0.878 8 C -0.187 4.187 9 C -0.009 4.009 10 O -0.231 6.231 11 C 0.091 3.909 12 C -0.173 4.173 13 C -0.105 4.105 14 C -0.170 4.170 15 C -0.079 4.079 16 C -0.140 4.140 17 C -0.014 4.014 18 C 0.030 3.970 19 N -0.332 5.332 20 C -0.352 4.352 21 H 0.099 0.901 22 C -0.202 4.202 23 N -0.567 5.567 24 Si 0.744 3.256 25 H -0.212 1.212 26 H -0.215 1.215 27 H -0.210 1.210 28 C -0.019 4.019 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.108 0.892 33 H 0.088 0.912 34 H 0.109 0.891 35 H 0.105 0.895 36 H 0.129 0.871 37 H 0.085 0.915 38 H 0.146 0.854 39 H 0.145 0.855 40 H 0.142 0.858 41 H 0.140 0.860 42 H 0.133 0.867 43 H 0.053 0.947 44 H 0.094 0.906 45 H 0.065 0.935 46 H 0.064 0.936 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -1.096 -4.246 21.395 21.840 hybrid contribution 0.093 -0.245 -1.421 1.445 sum -1.003 -4.492 19.974 20.498 Atomic orbital electron populations 1.22340 0.95693 1.02604 1.02813 1.21566 0.94684 0.82895 1.03021 1.48200 1.63922 1.13858 1.06668 1.20183 0.77431 0.86904 0.84721 1.90706 1.47375 1.15753 1.87029 1.20300 0.97979 0.98096 0.92644 0.87756 1.22180 0.96718 1.03180 0.96611 1.22955 1.01197 0.86036 0.90750 1.85978 1.52149 1.36913 1.48069 1.18609 0.88981 0.92327 0.90996 1.20516 0.98572 0.98698 0.99501 1.20912 0.96191 0.97737 0.95628 1.21011 1.01887 1.00343 0.93779 1.20913 0.93797 0.93616 0.99587 1.19293 1.00593 1.01710 0.92434 1.24049 0.98431 0.98481 0.80400 1.22694 0.90824 0.99095 0.84341 1.45641 1.03367 1.82837 1.01322 1.18940 0.93585 1.42599 0.80081 0.90130 1.24794 0.95260 1.02005 0.98180 1.69799 0.98936 1.54625 1.33314 0.86171 0.76978 0.77989 0.84437 1.21153 1.21502 1.20985 1.22977 0.95209 0.96861 0.86878 0.91580 0.92926 0.90783 0.89211 0.91215 0.89076 0.89498 0.87106 0.91539 0.85368 0.85522 0.85829 0.86013 0.86749 0.94694 0.90633 0.93497 0.93594 0.94792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.06 9.72 37.16 0.36 -1.70 16 2 C 0.10 1.25 4.78 -4.04 -0.02 1.23 16 3 N -0.59 -9.25 2.70 -167.90 -0.45 -9.71 16 4 C 0.52 8.21 5.58 -10.99 -0.06 8.15 16 5 O -0.53 -10.54 15.32 5.56 0.09 -10.46 16 6 C -0.07 -0.84 1.98 -92.85 -0.18 -1.02 16 7 H 0.10 1.06 5.17 -51.93 -0.27 0.79 16 8 C -0.15 -1.50 5.48 -26.48 -0.15 -1.64 16 9 C 0.07 0.55 7.03 37.37 0.26 0.82 16 10 O -0.32 -3.71 10.27 -19.26 -0.20 -3.90 16 11 C 0.14 1.73 6.47 -39.20 -0.25 1.48 16 12 C -0.15 -1.76 9.94 -39.34 -0.39 -2.15 16 13 C -0.09 -0.92 10.04 -39.66 -0.40 -1.31 16 14 C -0.15 -1.80 10.04 -39.61 -0.40 -2.19 16 15 C -0.06 -0.83 8.57 -39.53 -0.34 -1.17 16 16 C -0.14 -1.86 5.12 -104.44 -0.53 -2.39 16 17 C 0.09 1.76 4.41 -70.13 -0.31 1.45 16 18 C 0.16 3.57 6.42 -2.97 -0.02 3.55 16 19 N -0.61 -15.33 3.70 -178.08 -0.66 -15.99 16 20 C -0.22 -6.25 10.70 -15.06 -0.16 -6.41 16 21 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 22 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 23 N -0.92 -26.85 11.38 55.49 0.63 -26.22 16 24 Si 0.91 21.96 29.55 -169.99 -5.02 16.94 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 28 C 0.11 2.21 8.44 -2.97 -0.03 2.18 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.56 7.21 -51.93 -0.37 0.19 16 31 H 0.07 1.06 6.63 -51.93 -0.34 0.72 16 32 H 0.09 1.22 6.15 -51.93 -0.32 0.90 16 33 H 0.07 0.65 6.39 -51.93 -0.33 0.32 16 34 H 0.09 0.72 8.00 -51.93 -0.42 0.31 16 35 H 0.09 1.05 8.10 -51.93 -0.42 0.63 16 36 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 39 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 40 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 41 H 0.12 1.75 7.33 -52.49 -0.38 1.36 16 42 H 0.11 2.49 7.22 -51.93 -0.38 2.12 16 43 H 0.04 0.77 5.41 -51.93 -0.28 0.49 16 44 H 0.08 1.96 7.15 -51.93 -0.37 1.59 16 45 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 46 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.03 0.65 7.07 -51.93 -0.37 0.28 16 LS Contribution 369.17 15.07 5.56 5.56 Total: -1.00 -33.36 369.17 -9.52 -42.88 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -6.76 Total: 2.27 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: -2.71 Total: -1.38 kcal Atomic # 7 Polarization: -51.43 SS G_CDS: -0.48 Total: -51.91 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.11 Total: -14.36 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.36 -9.52 -42.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000956960466.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.998 kcal (2) G-P(sol) polarization free energy of solvation -33.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds