Wall clock time and date at job start Tue Mar 31 2020 16:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46494 * 109.46850 * 2 1 4 4 C 1.34771 * 120.00346 * 84.24361 * 3 2 1 5 5 O 1.21280 * 120.00528 * 185.13869 * 4 3 2 6 6 C 1.50705 * 119.99914 * 4.86569 * 4 3 2 7 7 H 1.09002 * 109.43150 * 335.72084 * 6 4 3 8 8 C 1.53070 * 109.43414 * 95.58589 * 6 4 3 9 9 C 1.53416 * 108.29878 * 168.25925 * 8 6 4 10 10 O 1.42827 * 108.37578 * 295.29270 * 9 8 6 11 11 C 1.35847 * 117.85700 * 49.20434 * 10 9 8 12 12 C 1.39142 * 118.49607 * 163.02769 * 11 10 9 13 13 C 1.37974 * 120.21264 * 179.55965 * 12 11 10 14 14 C 1.38288 * 119.95702 * 0.03387 * 13 12 11 15 15 C 1.38099 * 119.98536 * 0.06964 * 14 13 12 16 16 C 1.38374 * 121.80561 * 342.73810 * 11 10 9 17 17 C 1.46509 * 119.99912 * 264.24115 * 3 2 1 18 18 C 1.53949 * 113.74107 * 36.67650 * 17 3 2 19 19 N 1.47587 * 86.11429 * 222.04704 * 18 17 3 20 20 C 1.36933 * 134.48962 * 204.63410 * 19 18 17 21 21 H 1.08000 * 120.00002 * 180.02562 * 20 19 18 22 22 C 1.38812 * 119.99861 * 0.02562 * 20 19 18 23 23 N 1.31618 * 120.00212 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99747 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47327 * 60.00022 * 24 22 20 26 26 H 1.48494 * 109.47372 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47317 * 300.00333 * 24 22 20 28 28 C 1.47583 * 91.01409 * 24.64381 * 19 18 17 29 29 H 1.09001 * 109.47197 * 174.47546 * 1 2 3 30 30 H 1.08998 * 109.47240 * 294.47221 * 1 2 3 31 31 H 1.08999 * 109.47166 * 54.47717 * 1 2 3 32 32 H 1.09001 * 109.46798 * 239.99712 * 2 1 3 33 33 H 1.08995 * 109.47291 * 120.00242 * 2 1 3 34 34 H 1.08995 * 109.70368 * 287.96470 * 8 6 4 35 35 H 1.09005 * 109.69304 * 48.56145 * 8 6 4 36 36 H 1.08994 * 109.68134 * 175.57072 * 9 8 6 37 37 H 1.08994 * 109.71345 * 55.03165 * 9 8 6 38 38 H 1.07999 * 119.89398 * 359.55297 * 12 11 10 39 39 H 1.08001 * 120.01461 * 180.02562 * 13 12 11 40 40 H 1.07997 * 120.00181 * 180.02562 * 14 13 12 41 41 H 1.07997 * 119.84015 * 179.97438 * 15 14 13 42 42 H 1.08993 * 112.94485 * 168.41469 * 17 3 2 43 43 H 1.09003 * 113.76805 * 336.34813 * 18 17 3 44 44 H 1.08996 * 113.76704 * 107.74931 * 18 17 3 45 45 H 0.96999 * 119.99753 * 179.97438 * 23 22 20 46 46 H 1.09001 * 113.76225 * 221.06001 * 28 19 18 47 47 H 1.08994 * 113.87267 * 89.67262 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1325 2.0556 1.1612 5 8 2.4471 3.2269 1.1539 6 6 1.8634 1.3559 2.4686 7 1 1.2032 0.5059 2.2958 8 6 3.1844 0.8611 3.0628 9 6 2.9273 0.4230 4.5104 10 8 2.5441 1.5720 5.2672 11 6 1.5701 2.3710 4.7589 12 6 0.9349 3.2681 5.6119 13 6 -0.0530 4.1027 5.1311 14 6 -0.4146 4.0480 3.7974 15 6 0.2122 3.1572 2.9484 16 6 1.2043 2.3167 3.4255 17 6 2.3825 2.0294 -1.2624 18 6 1.4742 1.6410 -2.4432 19 7 2.7136 1.5630 -3.2406 20 6 3.0060 1.6775 -4.5734 21 1 4.0262 1.5761 -4.9131 22 6 1.9912 1.9239 -5.4879 23 7 0.7479 2.0470 -5.0740 24 14 2.3902 2.0808 -7.3060 25 1 3.0088 0.8197 -7.7878 26 1 1.1414 2.3409 -8.0662 27 1 3.3377 3.2061 -7.5096 28 6 3.5112 1.3118 -2.0245 29 1 -0.3634 -1.0229 -0.0989 30 1 -0.3633 0.4257 0.9353 31 1 -0.3633 0.5971 -0.8364 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.5542 0.0153 2.4831 35 1 3.9186 1.6666 3.0476 36 1 3.8364 -0.0070 4.9307 37 1 2.1266 -0.3161 4.5341 38 1 1.2160 3.3113 6.6538 39 1 -0.5436 4.7982 5.7960 40 1 -1.1874 4.7012 3.4202 41 1 -0.0723 3.1161 1.9074 42 1 2.5363 3.1035 -1.1596 43 1 0.9731 0.6815 -2.3149 44 1 0.7987 2.4364 -2.7579 45 1 0.0388 2.2195 -5.7130 46 1 4.4621 1.8444 -2.0051 47 1 3.6098 0.2561 -1.7719 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000956960466.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:35 Heat of formation + Delta-G solvation = -4.167311 kcal Electronic energy + Delta-G solvation = -29142.993318 eV Core-core repulsion = 25292.240838 eV Total energy + Delta-G solvation = -3850.752480 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.22936 -40.93605 -39.26494 -38.40733 -36.51627 -35.20158 -34.04589 -31.62041 -31.41659 -31.18503 -29.59344 -27.52864 -26.64713 -25.11975 -24.81039 -24.31879 -23.52641 -21.84918 -20.74189 -19.78720 -19.01259 -18.75082 -18.42753 -17.68901 -17.31865 -16.92612 -16.77560 -16.08673 -15.94676 -15.76696 -15.37080 -15.09198 -14.89088 -14.66621 -14.46357 -14.26034 -14.15606 -13.92909 -13.66274 -13.42633 -13.26650 -13.22826 -12.96512 -12.82885 -12.66406 -12.49864 -12.39072 -12.18292 -12.06944 -12.01127 -11.99735 -11.75639 -11.57853 -11.53724 -10.88283 -10.72306 -9.76749 -9.61944 -9.12269 -8.97559 -7.94386 -5.28720 0.32866 0.47049 1.44292 1.47922 1.51315 1.54015 1.89588 2.38221 2.46920 2.78878 3.23985 3.32350 3.40105 3.58161 3.64734 3.74077 3.83137 4.01259 4.10519 4.11434 4.21270 4.26269 4.36084 4.39450 4.44959 4.49032 4.52335 4.53448 4.56384 4.68577 4.71898 4.82156 4.87909 4.88381 4.96309 4.99238 5.05966 5.16737 5.25922 5.31799 5.39234 5.44749 5.48502 5.59492 5.70698 5.84672 5.87695 6.44180 6.48625 6.87119 7.14281 7.55575 8.49018 9.22183 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.022371 B = 0.002927 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.312865 B = 9563.456988 C =10028.306251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.096 3.904 3 N -0.591 5.591 4 C 0.522 3.478 5 O -0.580 6.580 6 C -0.060 4.060 7 H 0.130 0.870 8 C -0.147 4.147 9 C 0.063 3.937 10 O -0.328 6.328 11 C 0.126 3.874 12 C -0.161 4.161 13 C -0.082 4.082 14 C -0.163 4.163 15 C -0.085 4.085 16 C -0.157 4.157 17 C 0.113 3.887 18 C 0.164 3.836 19 N -0.636 5.636 20 C -0.238 4.238 21 H 0.086 0.914 22 C -0.064 4.064 23 N -0.951 5.951 24 Si 0.981 3.019 25 H -0.274 1.274 26 H -0.293 1.293 27 H -0.278 1.278 28 C 0.116 3.884 29 H 0.091 0.909 30 H 0.062 0.938 31 H 0.038 0.962 32 H 0.081 0.919 33 H 0.114 0.886 34 H 0.119 0.881 35 H 0.061 0.939 36 H 0.140 0.860 37 H 0.088 0.912 38 H 0.148 0.852 39 H 0.158 0.842 40 H 0.136 0.864 41 H 0.102 0.898 42 H 0.086 0.914 43 H 0.045 0.955 44 H 0.033 0.967 45 H 0.250 0.750 46 H 0.048 0.952 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.597 -6.996 23.740 24.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.025 4.025 3 N -0.323 5.323 4 C 0.311 3.689 5 O -0.459 6.459 6 C -0.081 4.081 7 H 0.147 0.853 8 C -0.185 4.185 9 C -0.011 4.011 10 O -0.242 6.242 11 C 0.081 3.919 12 C -0.179 4.179 13 C -0.100 4.100 14 C -0.181 4.181 15 C -0.103 4.103 16 C -0.159 4.159 17 C 0.008 3.992 18 C 0.038 3.962 19 N -0.363 5.363 20 C -0.366 4.366 21 H 0.103 0.897 22 C -0.257 4.257 23 N -0.599 5.599 24 Si 0.809 3.191 25 H -0.200 1.200 26 H -0.219 1.219 27 H -0.205 1.205 28 C -0.010 4.010 29 H 0.110 0.890 30 H 0.081 0.919 31 H 0.058 0.942 32 H 0.099 0.901 33 H 0.132 0.868 34 H 0.137 0.863 35 H 0.079 0.921 36 H 0.158 0.842 37 H 0.107 0.893 38 H 0.166 0.834 39 H 0.176 0.824 40 H 0.154 0.846 41 H 0.120 0.880 42 H 0.104 0.896 43 H 0.063 0.937 44 H 0.052 0.948 45 H 0.058 0.942 46 H 0.066 0.934 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.377 -6.340 23.559 24.400 hybrid contribution -0.121 0.415 -1.989 2.035 sum -0.498 -5.925 21.570 22.375 Atomic orbital electron populations 1.22300 0.95241 1.03619 1.01904 1.21869 0.95057 0.80859 1.04732 1.48154 1.63834 1.15112 1.05158 1.20875 0.75951 0.86375 0.85740 1.90683 1.49449 1.18078 1.87732 1.20328 0.99723 0.98118 0.89930 0.85275 1.22232 0.94658 1.03257 0.98319 1.23278 1.03292 0.85334 0.89235 1.85965 1.51723 1.37789 1.48737 1.18800 0.89269 0.92917 0.90906 1.20892 0.98383 0.98207 1.00447 1.21270 0.95687 0.97642 0.95358 1.21265 1.02192 1.00199 0.94460 1.20935 0.95112 0.95196 0.99046 1.19440 1.00858 1.02378 0.93198 1.23273 0.96963 0.97198 0.81741 1.22533 0.90107 0.98105 0.85473 1.45956 1.05230 1.83385 1.01764 1.19341 0.93924 1.41784 0.81588 0.89672 1.25650 0.95210 1.02389 1.02456 1.69997 0.99689 1.56007 1.34250 0.85117 0.76493 0.78280 0.79211 1.19957 1.21950 1.20452 1.23072 0.94905 0.98317 0.84675 0.89002 0.91859 0.94245 0.90069 0.86790 0.86266 0.92058 0.84237 0.89341 0.83389 0.82412 0.84608 0.88002 0.89631 0.93721 0.94842 0.94154 0.93385 0.91904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.79 9.72 71.98 0.70 -3.09 16 2 C 0.10 2.17 4.78 86.38 0.41 2.58 16 3 N -0.59 -18.21 2.70 -803.50 -2.17 -20.38 16 4 C 0.52 16.42 5.58 87.66 0.49 16.91 16 5 O -0.58 -23.90 15.32 -3.03 -0.05 -23.95 16 6 C -0.06 -1.36 1.98 -12.24 -0.02 -1.38 16 7 H 0.13 2.20 5.17 -2.39 -0.01 2.19 16 8 C -0.15 -2.55 5.48 30.76 0.17 -2.38 16 9 C 0.06 0.83 7.03 72.12 0.51 1.34 16 10 O -0.33 -6.85 10.27 -91.83 -0.94 -7.79 16 11 C 0.13 3.02 6.47 22.52 0.15 3.16 16 12 C -0.16 -3.35 9.94 22.42 0.22 -3.13 16 13 C -0.08 -1.59 10.04 22.22 0.22 -1.36 16 14 C -0.16 -3.80 10.04 22.25 0.22 -3.57 16 15 C -0.08 -2.35 8.57 22.30 0.19 -2.15 16 16 C -0.16 -4.08 5.12 -19.75 -0.10 -4.18 16 17 C 0.11 4.58 4.41 46.75 0.21 4.78 16 18 C 0.16 7.79 6.42 86.48 0.55 8.35 16 19 N -0.64 -32.92 3.70 -717.31 -2.65 -35.57 16 20 C -0.24 -13.46 10.70 84.03 0.90 -12.56 16 21 H 0.09 4.58 7.83 -2.91 -0.02 4.56 16 22 C -0.06 -3.64 5.50 84.86 0.47 -3.18 16 23 N -0.95 -57.43 11.38 21.65 0.25 -57.19 16 24 Si 0.98 45.80 29.55 68.60 2.03 47.83 16 25 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 26 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 27 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 28 C 0.12 4.74 8.44 86.48 0.73 5.47 16 29 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.06 1.25 7.21 -2.39 -0.02 1.23 16 31 H 0.04 1.14 6.63 -2.39 -0.02 1.13 16 32 H 0.08 2.02 6.15 -2.39 -0.01 2.01 16 33 H 0.11 1.61 6.39 -2.39 -0.02 1.59 16 34 H 0.12 1.37 8.00 -2.39 -0.02 1.35 16 35 H 0.06 1.41 8.10 -2.38 -0.02 1.39 16 36 H 0.14 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.15 2.41 8.06 -2.91 -0.02 2.38 16 39 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 40 H 0.14 2.67 8.06 -2.91 -0.02 2.65 16 41 H 0.10 3.12 7.33 -2.91 -0.02 3.10 16 42 H 0.09 3.97 7.22 -2.39 -0.02 3.95 16 43 H 0.05 2.03 5.41 -2.39 -0.01 2.02 16 44 H 0.03 1.86 7.15 -2.39 -0.02 1.84 16 45 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 46 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 47 H 0.06 2.25 7.07 -2.39 -0.02 2.23 16 Total: -1.00 -76.62 369.17 3.45 -73.16 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: 0.98 Total: 18.31 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: 6.02 Total: 5.59 kcal Atomic # 7 Polarization: -108.57 SS G_CDS: -4.58 Total: -113.14 kcal Atomic # 8 Polarization: -30.75 SS G_CDS: -0.99 Total: -31.74 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -76.62 3.45 -73.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000956960466.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.995 kcal (2) G-P(sol) polarization free energy of solvation -76.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds