Wall clock time and date at job start Tue Mar 31 2020 16:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46494 * 109.47001 * 2 1 4 4 C 1.34782 * 120.00288 * 99.11413 * 3 2 1 5 5 O 1.21584 * 120.00109 * 186.62597 * 4 3 2 6 6 C 1.47599 * 119.99666 * 6.62181 * 4 3 2 7 7 C 1.39754 * 120.26679 * 330.45876 * 6 4 3 8 8 C 1.37477 * 120.19962 * 179.78581 * 7 6 4 9 9 C 1.39582 * 120.42969 * 359.97438 * 8 7 6 10 10 C 1.39182 * 119.10601 * 0.38261 * 9 8 7 11 11 C 1.37315 * 120.93621 * 359.43098 * 10 9 8 12 12 C 1.51680 * 107.00750 * 179.03378 * 10 9 8 13 13 C 1.54687 * 101.91743 * 344.84784 * 12 10 9 14 14 H 1.08997 * 110.74814 * 143.60646 * 13 12 10 15 15 C 1.52999 * 110.90329 * 266.87669 * 13 12 10 16 16 O 1.35997 * 129.73862 * 180.97283 * 9 8 7 17 17 C 1.46505 * 120.00022 * 279.11285 * 3 2 1 18 18 C 1.53947 * 113.74111 * 222.92382 * 17 3 2 19 19 N 1.47817 * 86.03634 * 222.08267 * 18 17 3 20 20 C 1.36928 * 134.45818 * 204.64451 * 19 18 17 21 21 H 1.08001 * 120.00459 * 179.87146 * 20 19 18 22 22 C 1.38818 * 120.00018 * 359.87046 * 20 19 18 23 23 N 1.31620 * 120.00013 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00294 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47172 * 59.99753 * 24 22 20 26 26 H 1.48494 * 109.47391 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.46899 * 300.00084 * 24 22 20 28 28 C 1.47584 * 91.05110 * 24.55072 * 19 18 17 29 29 H 1.09001 * 109.47308 * 299.99957 * 1 2 3 30 30 H 1.08996 * 109.47453 * 59.99967 * 1 2 3 31 31 H 1.09005 * 109.47085 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46866 * 240.00198 * 2 1 3 33 33 H 1.09000 * 109.46758 * 119.99872 * 2 1 3 34 34 H 1.07991 * 119.90187 * 359.76986 * 7 6 4 35 35 H 1.08000 * 119.78509 * 180.02562 * 8 7 6 36 36 H 1.07994 * 120.06775 * 180.39830 * 11 10 9 37 37 H 1.09004 * 110.94237 * 103.00751 * 12 10 9 38 38 H 1.09000 * 110.93621 * 226.69105 * 12 10 9 39 39 H 1.08995 * 109.47892 * 174.93502 * 15 13 12 40 40 H 1.09009 * 109.46885 * 294.93527 * 15 13 12 41 41 H 1.09003 * 109.47208 * 54.93534 * 15 13 12 42 42 H 1.08997 * 112.94538 * 354.51834 * 17 3 2 43 43 H 1.08999 * 113.76980 * 336.35051 * 18 17 3 44 44 H 1.09001 * 113.76629 * 107.75102 * 18 17 3 45 45 H 0.97000 * 119.99989 * 180.02562 * 23 22 20 46 46 H 1.08990 * 113.77291 * 221.14821 * 28 19 18 47 47 H 1.09007 * 113.76526 * 89.75006 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4172 1.9550 1.1525 5 8 2.7079 3.1353 1.1752 6 6 2.5012 1.1504 2.3870 7 6 1.6518 0.0564 2.5740 8 6 1.7342 -0.6947 3.7224 9 6 2.6652 -0.3740 4.7117 10 6 3.5033 0.7211 4.5231 11 6 3.4319 1.4758 3.3782 12 6 4.3749 0.8308 5.7596 13 6 3.6260 -0.0805 6.7603 14 1 4.3305 -0.6191 7.3940 15 6 2.6466 0.7312 7.6104 16 8 2.9201 -0.9885 5.8978 17 6 2.0730 2.1388 -1.2528 18 6 3.3644 2.9588 -1.4253 19 7 2.4904 4.0362 -1.9354 20 6 2.6756 5.1091 -2.7658 21 1 1.8492 5.7671 -2.9905 22 6 3.9257 5.3510 -3.3188 23 7 4.9330 4.5495 -3.0445 24 14 4.1786 6.8151 -4.4511 25 1 3.8616 8.0676 -3.7191 26 1 5.5918 6.8509 -4.9057 27 1 3.2832 6.6901 -5.6292 28 6 1.3380 3.4902 -1.1925 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.9284 -0.1995 1.8141 35 1 1.0748 -1.5390 3.8598 36 1 4.0934 2.3188 3.2437 37 1 5.3783 0.4526 5.5638 38 1 4.4112 1.8587 6.1206 39 1 2.0686 0.0570 8.2424 40 1 3.2017 1.4298 8.2367 41 1 1.9719 1.2854 6.9579 42 1 1.8151 1.5376 -2.1246 43 1 3.8591 3.2024 -0.4851 44 1 4.0457 2.5531 -2.1733 45 1 5.8066 4.7188 -3.4307 46 1 0.4045 3.5080 -1.7547 47 1 1.2362 3.8903 -0.1836 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000956961011.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:03 Heat of formation + Delta-G solvation = 59.001667 kcal Electronic energy + Delta-G solvation = -28684.763311 eV Core-core repulsion = 24836.750044 eV Total energy + Delta-G solvation = -3848.013267 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.54604 -40.24645 -37.79182 -36.47477 -35.53565 -33.40640 -32.11415 -31.08847 -30.50087 -30.06649 -27.48621 -26.95199 -24.61065 -24.35446 -23.34157 -22.54943 -22.07460 -21.82793 -20.19080 -18.61413 -17.62340 -17.08489 -16.75586 -16.41038 -16.17675 -15.44930 -14.93640 -14.83378 -14.59874 -14.52627 -14.17496 -13.86368 -13.74323 -13.47814 -13.13602 -12.85041 -12.74619 -12.58503 -12.45808 -12.30884 -12.25968 -12.12053 -11.60581 -11.51939 -11.40150 -11.26282 -11.17604 -10.88279 -10.78977 -10.74928 -10.53879 -10.02761 -9.92316 -9.39507 -9.27607 -9.02981 -8.58052 -8.27480 -8.02542 -6.69547 -5.64232 -2.94638 0.85925 1.16293 2.84537 3.09071 3.27130 3.47064 3.50879 3.52380 3.74560 4.11607 4.27681 4.51730 4.57839 4.62281 4.67667 4.78914 4.86361 4.95270 5.13566 5.14804 5.22179 5.28379 5.36597 5.39457 5.41549 5.51285 5.53948 5.61689 5.66661 5.73946 5.74672 5.78506 5.85761 5.90644 6.01885 6.15499 6.19420 6.26187 6.34540 6.44065 6.69087 6.72042 6.94669 7.04291 7.38870 7.65797 7.69508 7.84850 8.10022 8.62228 9.16962 9.83124 10.75067 11.53182 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.019144 B = 0.002868 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.214935 B = 9760.824989 C =10750.929007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.069 3.931 3 N -0.595 5.595 4 C 0.554 3.446 5 O -0.509 6.509 6 C -0.150 4.150 7 C -0.086 4.086 8 C -0.149 4.149 9 C 0.122 3.878 10 C -0.183 4.183 11 C -0.014 4.014 12 C -0.105 4.105 13 C 0.076 3.924 14 H 0.116 0.884 15 C -0.172 4.172 16 O -0.300 6.300 17 C 0.091 3.909 18 C 0.157 3.843 19 N -0.604 5.604 20 C -0.216 4.216 21 H 0.078 0.922 22 C -0.010 4.010 23 N -0.921 5.921 24 Si 0.912 3.088 25 H -0.286 1.286 26 H -0.290 1.290 27 H -0.285 1.285 28 C 0.112 3.888 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.104 0.896 34 H 0.168 0.832 35 H 0.132 0.868 36 H 0.136 0.864 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.103 0.897 43 H 0.051 0.949 44 H 0.067 0.933 45 H 0.252 0.748 46 H 0.035 0.965 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.011 -15.900 18.788 25.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.054 4.054 3 N -0.328 5.328 4 C 0.342 3.658 5 O -0.385 6.385 6 C -0.154 4.154 7 C -0.104 4.104 8 C -0.167 4.167 9 C 0.076 3.924 10 C -0.183 4.183 11 C -0.032 4.032 12 C -0.142 4.142 13 C 0.021 3.979 14 H 0.134 0.866 15 C -0.230 4.230 16 O -0.214 6.214 17 C -0.013 4.013 18 C 0.031 3.969 19 N -0.330 5.330 20 C -0.344 4.344 21 H 0.096 0.904 22 C -0.206 4.206 23 N -0.569 5.569 24 Si 0.742 3.258 25 H -0.213 1.213 26 H -0.216 1.216 27 H -0.212 1.212 28 C -0.015 4.015 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.121 0.879 34 H 0.185 0.815 35 H 0.150 0.850 36 H 0.154 0.846 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.083 0.917 42 H 0.121 0.879 43 H 0.069 0.931 44 H 0.085 0.915 45 H 0.062 0.938 46 H 0.053 0.947 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.709 -15.252 18.640 24.752 hybrid contribution 0.292 0.909 -0.530 1.092 sum -5.416 -14.343 18.110 23.728 Atomic orbital electron populations 1.22304 0.96024 1.02195 1.03207 1.22424 0.94347 0.84159 1.04483 1.47970 1.63572 1.13304 1.07930 1.18067 0.77967 0.87040 0.82757 1.90871 1.47795 1.14977 1.84833 1.19933 1.00601 0.98380 0.96446 1.22147 0.98961 0.92755 0.96493 1.20209 0.99538 1.03574 0.93413 1.19829 0.93642 0.91720 0.87174 1.20633 1.00250 0.99559 0.97899 1.20346 0.95883 0.97147 0.89865 1.21860 0.98906 1.01787 0.91689 1.23445 0.92969 0.89939 0.91590 0.86642 1.22256 1.00024 1.00419 1.00258 1.86845 1.73491 1.37934 1.23090 1.24068 1.02177 0.91332 0.83683 1.22690 0.91387 0.85161 0.97644 1.45667 1.06217 1.30171 1.50942 1.18945 0.95247 1.02101 1.18070 0.90401 1.24773 0.95585 0.99252 1.01019 1.69824 1.00765 1.38602 1.47660 0.86203 0.76796 0.82316 0.80465 1.21275 1.21634 1.21186 1.22954 0.91890 0.90539 0.96147 0.92000 0.91297 0.91418 0.90538 0.87855 0.81524 0.85033 0.84603 0.88938 0.88735 0.91317 0.90535 0.91683 0.87859 0.93088 0.91524 0.93761 0.94685 0.93058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.67 9.14 37.16 0.34 -1.33 16 2 C 0.07 0.78 5.58 -4.04 -0.02 0.75 16 3 N -0.59 -9.69 2.74 -169.09 -0.46 -10.15 16 4 C 0.55 9.93 6.87 -12.44 -0.09 9.85 16 5 O -0.51 -11.49 12.45 5.29 0.07 -11.42 16 6 C -0.15 -2.16 5.60 -104.93 -0.59 -2.75 16 7 C -0.09 -0.97 7.47 -39.29 -0.29 -1.26 16 8 C -0.15 -1.56 10.05 -39.36 -0.40 -1.96 16 9 C 0.12 1.40 6.95 -38.73 -0.27 1.13 16 10 C -0.18 -2.14 6.25 -104.12 -0.65 -2.79 16 11 C -0.01 -0.19 9.58 -39.33 -0.38 -0.56 16 12 C -0.11 -0.90 6.66 -26.51 -0.18 -1.08 16 13 C 0.08 0.59 4.30 -25.84 -0.11 0.48 16 14 H 0.12 0.62 8.14 -51.93 -0.42 0.20 16 15 C -0.17 -1.16 9.50 37.16 0.35 -0.80 16 16 O -0.30 -3.20 10.81 -19.73 -0.21 -3.42 16 17 C 0.09 1.80 4.58 -70.13 -0.32 1.48 16 18 C 0.16 4.03 6.79 -2.83 -0.02 4.01 16 19 N -0.60 -16.73 3.70 -177.86 -0.66 -17.39 16 20 C -0.22 -6.43 10.70 -15.06 -0.16 -6.59 16 21 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 22 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 23 N -0.92 -28.67 11.39 55.49 0.63 -28.03 16 24 Si 0.91 23.11 29.55 -169.99 -5.02 18.09 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 28 C 0.11 2.54 8.27 -2.96 -0.02 2.52 16 29 H 0.06 0.59 7.13 -51.93 -0.37 0.22 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.80 8.13 -51.93 -0.42 0.38 16 33 H 0.10 1.04 3.93 -52.67 -0.21 0.83 16 34 H 0.17 1.56 2.63 -52.49 -0.14 1.43 16 35 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.14 1.96 7.93 -52.49 -0.42 1.55 16 37 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.09 0.70 7.92 -51.93 -0.41 0.29 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.38 8.14 -51.92 -0.42 -0.04 16 41 H 0.06 0.54 8.12 -51.93 -0.42 0.12 16 42 H 0.10 1.89 8.07 -51.93 -0.42 1.47 16 43 H 0.05 1.43 5.77 -51.93 -0.30 1.13 16 44 H 0.07 1.85 7.17 -51.93 -0.37 1.47 16 45 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 46 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.05 1.25 6.24 -51.93 -0.32 0.92 16 LS Contribution 370.00 15.07 5.58 5.58 Total: -1.00 -36.12 370.00 -9.71 -45.83 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -6.73 Total: 0.22 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: -2.90 Total: 0.70 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: -0.49 Total: -55.57 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: -0.15 Total: -14.84 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -5.02 Total: 18.09 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.12 -9.71 -45.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000956961011.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.833 kcal (2) G-P(sol) polarization free energy of solvation -36.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds