Wall clock time and date at job start Tue Mar 31 2020 16:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46494 * 109.47001 * 2 1 4 4 C 1.34782 * 120.00288 * 99.11413 * 3 2 1 5 5 O 1.21584 * 120.00109 * 186.62597 * 4 3 2 6 6 C 1.47599 * 119.99666 * 6.62181 * 4 3 2 7 7 C 1.39754 * 120.26679 * 330.45876 * 6 4 3 8 8 C 1.37477 * 120.19962 * 179.78581 * 7 6 4 9 9 C 1.39582 * 120.42969 * 359.97438 * 8 7 6 10 10 C 1.39182 * 119.10601 * 0.38261 * 9 8 7 11 11 C 1.37315 * 120.93621 * 359.43098 * 10 9 8 12 12 C 1.51680 * 107.00750 * 179.03378 * 10 9 8 13 13 C 1.54687 * 101.91743 * 344.84784 * 12 10 9 14 14 H 1.08997 * 110.74814 * 143.60646 * 13 12 10 15 15 C 1.52999 * 110.90329 * 266.87669 * 13 12 10 16 16 O 1.35997 * 129.73862 * 180.97283 * 9 8 7 17 17 C 1.46505 * 120.00022 * 279.11285 * 3 2 1 18 18 C 1.53947 * 113.74111 * 222.92382 * 17 3 2 19 19 N 1.47817 * 86.03634 * 222.08267 * 18 17 3 20 20 C 1.36928 * 134.45818 * 204.64451 * 19 18 17 21 21 H 1.08001 * 120.00459 * 179.87146 * 20 19 18 22 22 C 1.38818 * 120.00018 * 359.87046 * 20 19 18 23 23 N 1.31620 * 120.00013 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00294 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47172 * 59.99753 * 24 22 20 26 26 H 1.48494 * 109.47391 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.46899 * 300.00084 * 24 22 20 28 28 C 1.47584 * 91.05110 * 24.55072 * 19 18 17 29 29 H 1.09001 * 109.47308 * 299.99957 * 1 2 3 30 30 H 1.08996 * 109.47453 * 59.99967 * 1 2 3 31 31 H 1.09005 * 109.47085 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46866 * 240.00198 * 2 1 3 33 33 H 1.09000 * 109.46758 * 119.99872 * 2 1 3 34 34 H 1.07991 * 119.90187 * 359.76986 * 7 6 4 35 35 H 1.08000 * 119.78509 * 180.02562 * 8 7 6 36 36 H 1.07994 * 120.06775 * 180.39830 * 11 10 9 37 37 H 1.09004 * 110.94237 * 103.00751 * 12 10 9 38 38 H 1.09000 * 110.93621 * 226.69105 * 12 10 9 39 39 H 1.08995 * 109.47892 * 174.93502 * 15 13 12 40 40 H 1.09009 * 109.46885 * 294.93527 * 15 13 12 41 41 H 1.09003 * 109.47208 * 54.93534 * 15 13 12 42 42 H 1.08997 * 112.94538 * 354.51834 * 17 3 2 43 43 H 1.08999 * 113.76980 * 336.35051 * 18 17 3 44 44 H 1.09001 * 113.76629 * 107.75102 * 18 17 3 45 45 H 0.97000 * 119.99989 * 180.02562 * 23 22 20 46 46 H 1.08990 * 113.77291 * 221.14821 * 28 19 18 47 47 H 1.09007 * 113.76526 * 89.75006 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4172 1.9550 1.1525 5 8 2.7079 3.1353 1.1752 6 6 2.5012 1.1504 2.3870 7 6 1.6518 0.0564 2.5740 8 6 1.7342 -0.6947 3.7224 9 6 2.6652 -0.3740 4.7117 10 6 3.5033 0.7211 4.5231 11 6 3.4319 1.4758 3.3782 12 6 4.3749 0.8308 5.7596 13 6 3.6260 -0.0805 6.7603 14 1 4.3305 -0.6191 7.3940 15 6 2.6466 0.7312 7.6104 16 8 2.9201 -0.9885 5.8978 17 6 2.0730 2.1388 -1.2528 18 6 3.3644 2.9588 -1.4253 19 7 2.4904 4.0362 -1.9354 20 6 2.6756 5.1091 -2.7658 21 1 1.8492 5.7671 -2.9905 22 6 3.9257 5.3510 -3.3188 23 7 4.9330 4.5495 -3.0445 24 14 4.1786 6.8151 -4.4511 25 1 3.8616 8.0676 -3.7191 26 1 5.5918 6.8509 -4.9057 27 1 3.2832 6.6901 -5.6292 28 6 1.3380 3.4902 -1.1925 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.9284 -0.1995 1.8141 35 1 1.0748 -1.5390 3.8598 36 1 4.0934 2.3188 3.2437 37 1 5.3783 0.4526 5.5638 38 1 4.4112 1.8587 6.1206 39 1 2.0686 0.0570 8.2424 40 1 3.2017 1.4298 8.2367 41 1 1.9719 1.2854 6.9579 42 1 1.8151 1.5376 -2.1246 43 1 3.8591 3.2024 -0.4851 44 1 4.0457 2.5531 -2.1733 45 1 5.8066 4.7188 -3.4307 46 1 0.4045 3.5080 -1.7547 47 1 1.2362 3.8903 -0.1836 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000956961011.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:02 Heat of formation + Delta-G solvation = 35.850803 kcal Electronic energy + Delta-G solvation = -28685.767208 eV Core-core repulsion = 24836.750044 eV Total energy + Delta-G solvation = -3849.017164 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.43559 -41.56835 -39.17642 -37.92878 -36.79699 -34.27759 -34.08735 -32.06677 -31.50387 -31.17541 -29.27790 -27.86874 -26.58336 -25.80269 -24.57563 -23.75008 -22.99426 -22.55514 -21.85725 -19.99621 -18.79276 -18.48292 -18.07339 -17.72381 -17.04365 -16.96051 -16.47651 -16.22029 -16.06945 -15.62338 -15.51474 -14.99671 -14.72430 -14.56490 -14.40619 -14.08669 -13.83192 -13.72098 -13.61056 -13.39517 -13.24194 -13.09714 -13.02101 -12.95364 -12.80823 -12.66709 -12.46943 -12.21742 -12.06203 -12.00711 -11.88030 -11.72818 -11.53510 -11.47692 -10.98415 -10.53462 -9.95672 -9.53965 -9.17227 -8.89539 -7.90948 -5.24746 -0.14715 0.23959 1.41740 1.47452 1.53325 1.72158 1.96790 2.22848 2.48599 2.69033 3.27176 3.39461 3.44508 3.51330 3.62148 3.80419 3.83215 3.93601 3.98977 4.12528 4.23461 4.26411 4.28609 4.37924 4.48125 4.57369 4.61895 4.63761 4.74815 4.80684 4.82952 4.87918 4.92023 4.97400 5.03692 5.06345 5.09960 5.21862 5.22253 5.25616 5.28118 5.31099 5.42190 5.47620 5.48376 5.86924 5.91148 6.10748 6.50648 6.89661 7.24848 7.58732 8.56827 9.26318 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.019144 B = 0.002868 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.214935 B = 9760.824989 C =10750.929007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.061 3.939 3 N -0.592 5.592 4 C 0.549 3.451 5 O -0.570 6.570 6 C -0.172 4.172 7 C -0.073 4.073 8 C -0.143 4.143 9 C 0.122 3.878 10 C -0.189 4.189 11 C -0.033 4.033 12 C -0.108 4.108 13 C 0.075 3.925 14 H 0.145 0.855 15 C -0.170 4.170 16 O -0.306 6.306 17 C 0.128 3.872 18 C 0.155 3.845 19 N -0.632 5.632 20 C -0.237 4.237 21 H 0.083 0.917 22 C -0.071 4.071 23 N -0.955 5.955 24 Si 0.986 3.014 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.269 1.269 28 C 0.113 3.887 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.105 0.895 32 H 0.092 0.908 33 H 0.121 0.879 34 H 0.190 0.810 35 H 0.165 0.835 36 H 0.113 0.887 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.076 0.924 40 H 0.095 0.905 41 H 0.044 0.956 42 H 0.130 0.870 43 H 0.019 0.981 44 H 0.038 0.962 45 H 0.248 0.752 46 H 0.058 0.942 47 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.761 -18.394 19.867 28.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.060 4.060 3 N -0.323 5.323 4 C 0.339 3.661 5 O -0.450 6.450 6 C -0.175 4.175 7 C -0.090 4.090 8 C -0.161 4.161 9 C 0.076 3.924 10 C -0.190 4.190 11 C -0.052 4.052 12 C -0.144 4.144 13 C 0.020 3.980 14 H 0.163 0.837 15 C -0.227 4.227 16 O -0.220 6.220 17 C 0.024 3.976 18 C 0.028 3.972 19 N -0.359 5.359 20 C -0.365 4.365 21 H 0.101 0.899 22 C -0.263 4.263 23 N -0.604 5.604 24 Si 0.813 3.187 25 H -0.208 1.208 26 H -0.218 1.218 27 H -0.194 1.194 28 C -0.013 4.013 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.124 0.876 32 H 0.110 0.890 33 H 0.138 0.862 34 H 0.207 0.793 35 H 0.183 0.817 36 H 0.131 0.869 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.095 0.905 40 H 0.113 0.887 41 H 0.064 0.936 42 H 0.148 0.852 43 H 0.037 0.963 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.076 0.924 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -7.509 -17.808 19.744 27.628 hybrid contribution 0.844 1.627 -0.703 1.963 sum -6.665 -16.181 19.041 25.861 Atomic orbital electron populations 1.22292 0.93867 1.04487 1.02664 1.22832 0.96015 0.80971 1.06157 1.47965 1.63212 1.15060 1.06087 1.18698 0.76641 0.86645 0.84117 1.90834 1.50433 1.17781 1.85953 1.19702 1.02771 0.99845 0.95222 1.22289 0.98151 0.91238 0.97328 1.20567 0.99279 1.03899 0.92346 1.20097 0.93361 0.91235 0.87733 1.20869 1.00989 0.99252 0.97923 1.20267 0.96353 0.97414 0.91188 1.22004 0.99053 1.02790 0.90593 1.23743 0.93299 0.89760 0.91205 0.83727 1.22265 0.99795 1.00633 1.00041 1.86844 1.73615 1.38661 1.22855 1.23396 0.97069 0.90993 0.86185 1.22488 0.93126 0.86480 0.95062 1.46097 1.08338 1.30263 1.51182 1.19410 0.95746 1.03006 1.18368 0.89886 1.25734 0.95245 1.02363 1.02991 1.70049 1.00941 1.40423 1.48961 0.85056 0.76619 0.78458 0.78598 1.20760 1.21782 1.19425 1.22993 0.91739 0.91684 0.94843 0.92195 0.92272 0.87640 0.89001 0.86164 0.79330 0.81708 0.86905 0.87920 0.87949 0.90485 0.88671 0.93644 0.85200 0.96313 0.94404 0.94304 0.92419 0.94800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.64 9.14 71.98 0.66 -1.98 16 2 C 0.06 1.22 5.58 86.38 0.48 1.70 16 3 N -0.59 -19.26 2.74 -807.15 -2.21 -21.47 16 4 C 0.55 20.58 6.87 86.71 0.60 21.18 16 5 O -0.57 -27.84 12.45 -3.98 -0.05 -27.89 16 6 C -0.17 -5.04 5.60 -20.06 -0.11 -5.16 16 7 C -0.07 -1.49 7.47 22.46 0.17 -1.32 16 8 C -0.14 -2.56 10.05 22.41 0.23 -2.34 16 9 C 0.12 2.56 6.95 22.82 0.16 2.71 16 10 C -0.19 -4.38 6.25 -19.54 -0.12 -4.50 16 11 C -0.03 -0.97 9.58 22.43 0.21 -0.75 16 12 C -0.11 -1.71 6.66 30.74 0.20 -1.50 16 13 C 0.07 0.96 4.30 31.17 0.13 1.10 16 14 H 0.15 1.05 8.14 -2.39 -0.02 1.03 16 15 C -0.17 -1.91 9.50 71.98 0.68 -1.22 16 16 O -0.31 -5.70 10.81 -93.52 -1.01 -6.71 16 17 C 0.13 5.16 4.58 46.75 0.21 5.37 16 18 C 0.15 8.39 6.79 86.44 0.59 8.98 16 19 N -0.63 -36.40 3.70 -716.62 -2.65 -39.06 16 20 C -0.24 -14.52 10.70 84.04 0.90 -13.62 16 21 H 0.08 4.83 7.83 -2.91 -0.02 4.81 16 22 C -0.07 -4.33 5.50 84.86 0.47 -3.87 16 23 N -0.96 -61.94 11.39 21.65 0.25 -61.69 16 24 Si 0.99 48.57 29.55 68.60 2.03 50.60 16 25 H -0.28 -13.53 7.11 99.48 0.71 -12.83 16 26 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 27 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 28 C 0.11 5.28 8.27 86.49 0.72 6.00 16 29 H 0.06 0.95 7.13 -2.39 -0.02 0.94 16 30 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.09 1.62 8.13 -2.39 -0.02 1.60 16 33 H 0.12 2.05 3.93 -3.09 -0.01 2.04 16 34 H 0.19 2.91 2.63 -2.92 -0.01 2.90 16 35 H 0.17 1.89 8.06 -2.91 -0.02 1.87 16 36 H 0.11 3.69 7.93 -2.91 -0.02 3.67 16 37 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.10 1.45 7.92 -2.39 -0.02 1.43 16 39 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 41 H 0.04 0.69 8.12 -2.39 -0.02 0.67 16 42 H 0.13 4.58 8.07 -2.39 -0.02 4.56 16 43 H 0.02 1.15 5.77 -2.39 -0.01 1.14 16 44 H 0.04 2.23 7.17 -2.39 -0.02 2.21 16 45 H 0.25 15.53 8.31 -92.71 -0.77 14.76 16 46 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 47 H 0.03 1.73 6.24 -2.38 -0.01 1.71 16 Total: -1.00 -84.72 370.00 3.50 -81.21 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: 0.99 Total: 14.24 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: 6.17 Total: 10.78 kcal Atomic # 7 Polarization: -117.60 SS G_CDS: -4.62 Total: -122.22 kcal Atomic # 8 Polarization: -33.55 SS G_CDS: -1.06 Total: -34.61 kcal Atomic # 14 Polarization: 48.57 SS G_CDS: 2.03 Total: 50.60 kcal Total: -84.72 3.50 -81.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000956961011.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.063 kcal (2) G-P(sol) polarization free energy of solvation -84.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds