Wall clock time and date at job start Tue Mar 31 2020 16:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.47214 * 2 1 4 4 C 1.34778 * 119.99629 * 87.07114 * 3 2 1 5 5 O 1.21278 * 120.00160 * 184.71988 * 4 3 2 6 6 C 1.50705 * 120.00111 * 4.71386 * 4 3 2 7 7 H 1.09003 * 109.67493 * 315.18090 * 6 4 3 8 8 C 1.53399 * 109.67917 * 75.74228 * 6 4 3 9 9 C 1.53078 * 108.29594 * 184.42825 * 8 6 4 10 10 C 1.50768 * 109.67878 * 311.78306 * 9 8 6 11 11 C 1.38505 * 118.76037 * 197.62008 * 10 9 8 12 12 C 1.38104 * 120.31439 * 180.44679 * 11 10 9 13 13 C 1.38296 * 119.98177 * 359.97368 * 12 11 10 14 14 C 1.37963 * 119.95947 * 359.90185 * 13 12 11 15 15 C 1.38369 * 121.40378 * 17.86838 * 10 9 8 16 16 O 1.35843 * 121.80475 * 359.45432 * 15 10 9 17 17 C 1.46498 * 120.00239 * 267.07166 * 3 2 1 18 18 C 1.53948 * 113.74094 * 34.29224 * 17 3 2 19 19 N 1.47816 * 86.03398 * 222.08411 * 18 17 3 20 20 C 1.36938 * 134.45632 * 204.64557 * 19 18 17 21 21 H 1.07999 * 120.00145 * 184.61239 * 20 19 18 22 22 C 1.38809 * 119.99892 * 4.61090 * 20 19 18 23 23 N 1.31624 * 119.99957 * 5.37053 * 22 20 19 24 24 Si 1.86800 * 120.00206 * 185.37104 * 22 20 19 25 25 H 1.48498 * 109.47341 * 94.99230 * 24 22 20 26 26 H 1.48501 * 109.47025 * 214.99451 * 24 22 20 27 27 H 1.48505 * 109.46876 * 334.98967 * 24 22 20 28 28 C 1.47575 * 91.05094 * 24.54818 * 19 18 17 29 29 H 1.09004 * 109.47064 * 174.36137 * 1 2 3 30 30 H 1.09006 * 109.46482 * 294.35689 * 1 2 3 31 31 H 1.08994 * 109.47484 * 54.35868 * 1 2 3 32 32 H 1.08995 * 109.47447 * 120.00327 * 2 1 3 33 33 H 1.09002 * 109.46754 * 240.00811 * 2 1 3 34 34 H 1.09001 * 109.70054 * 304.12385 * 8 6 4 35 35 H 1.08993 * 109.70198 * 64.72503 * 8 6 4 36 36 H 1.09003 * 109.43581 * 191.71814 * 9 8 6 37 37 H 1.09000 * 109.40107 * 71.82858 * 9 8 6 38 38 H 1.07998 * 119.84273 * 0.44836 * 11 10 9 39 39 H 1.07996 * 120.00707 * 179.97438 * 12 11 10 40 40 H 1.08000 * 120.01837 * 179.97438 * 13 12 11 41 41 H 1.07999 * 119.89556 * 180.02562 * 14 13 12 42 42 H 1.09003 * 112.94629 * 165.88066 * 17 3 2 43 43 H 1.09000 * 113.77087 * 336.34829 * 18 17 3 44 44 H 1.08996 * 113.76781 * 107.74375 * 18 17 3 45 45 H 0.97004 * 119.99506 * 180.02562 * 23 22 20 46 46 H 1.09000 * 113.77006 * 221.14788 * 28 19 18 47 47 H 1.09007 * 113.76874 * 89.75707 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1868 2.0364 1.1657 5 8 2.5085 3.2057 1.1632 6 6 1.9750 1.3160 2.4724 7 1 1.0619 0.7230 2.4208 8 6 3.1719 0.3997 2.7570 9 6 2.8752 -0.3972 4.0298 10 6 2.3849 0.5343 5.1092 11 6 2.4105 0.1020 6.4248 12 6 1.9605 0.9254 7.4381 13 6 1.4819 2.1884 7.1410 14 6 1.4564 2.6254 5.8327 15 6 1.9100 1.7989 4.8093 16 8 1.8724 2.2657 3.5342 17 6 2.3237 2.0503 -1.2670 18 6 1.3972 1.6372 -2.4250 19 7 2.6190 1.6086 -3.2564 20 6 2.8711 1.7422 -4.5958 21 1 3.8739 1.6061 -4.9728 22 6 1.8375 2.0525 -5.4689 23 7 0.6379 2.3223 -4.9992 24 14 2.1492 2.0874 -7.3104 25 1 1.7792 0.7756 -7.9000 26 1 1.3286 3.1582 -7.9311 27 1 3.5875 2.3561 -7.5640 28 6 3.4579 1.3808 -2.0639 29 1 -0.3633 -1.0227 -0.1010 30 1 -0.3632 0.4239 0.9363 31 1 -0.3634 0.5988 -0.8351 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5137 -0.8901 34 1 3.3179 -0.2844 1.9210 35 1 4.0693 1.0014 2.9010 36 1 3.7845 -0.8954 4.3661 37 1 2.1093 -1.1436 3.8194 38 1 2.7843 -0.8838 6.6594 39 1 1.9824 0.5831 8.4621 40 1 1.1295 2.8327 7.9329 41 1 1.0828 3.6121 5.6019 42 1 2.4392 3.1289 -1.1609 43 1 0.9346 0.6595 -2.2902 44 1 0.6851 2.4097 -2.7149 45 1 -0.0844 2.5388 -5.6095 46 1 4.3881 1.9490 -2.0660 47 1 3.6020 0.3275 -1.8227 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000956969689.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:32 Heat of formation + Delta-G solvation = 17.011797 kcal Electronic energy + Delta-G solvation = -28669.163489 eV Core-core repulsion = 24819.329404 eV Total energy + Delta-G solvation = -3849.834085 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.19338 -39.78789 -37.99774 -37.10072 -35.34354 -34.37439 -32.16654 -30.98220 -30.41238 -30.26787 -27.78939 -26.43727 -24.87417 -24.14646 -23.49930 -23.01678 -22.69302 -20.69993 -19.76466 -18.51715 -18.22836 -17.25868 -16.81374 -16.79521 -16.02839 -15.50188 -15.39770 -14.84840 -14.68373 -14.53204 -14.18911 -14.16133 -13.85004 -13.75455 -13.45675 -13.20351 -12.85404 -12.72790 -12.58870 -12.20629 -12.04331 -11.76476 -11.70600 -11.55287 -11.42207 -11.34252 -11.17544 -10.90573 -10.88638 -10.71157 -10.65629 -10.29170 -10.08181 -9.60979 -9.44077 -9.02884 -8.85682 -8.35197 -8.25686 -6.94165 -5.81905 -3.16453 1.07699 1.21158 2.50457 2.74523 3.36385 3.41186 3.44041 3.46217 3.59923 4.26060 4.28206 4.42773 4.46576 4.54770 4.69620 4.83825 4.88607 4.92887 5.02547 5.12909 5.18681 5.25461 5.26737 5.31131 5.40958 5.45393 5.51223 5.59461 5.62437 5.72138 5.78909 5.83591 5.87259 6.02369 6.07100 6.13097 6.22136 6.29512 6.31878 6.39773 6.52774 6.55613 6.71262 7.13887 7.23439 7.33292 7.48766 7.65463 7.92657 8.33265 8.97877 9.64605 10.50750 11.33784 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.033275 B = 0.002468 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.276167 B =11342.316311 C =11475.993271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.095 3.905 3 N -0.590 5.590 4 C 0.520 3.480 5 O -0.520 6.520 6 C 0.075 3.925 7 H 0.096 0.904 8 C -0.151 4.151 9 C -0.075 4.075 10 C -0.164 4.164 11 C -0.084 4.084 12 C -0.156 4.156 13 C -0.088 4.088 14 C -0.147 4.147 15 C 0.137 3.863 16 O -0.289 6.289 17 C 0.093 3.907 18 C 0.148 3.852 19 N -0.605 5.605 20 C -0.223 4.223 21 H 0.082 0.918 22 C -0.006 4.006 23 N -0.918 5.918 24 Si 0.914 3.086 25 H -0.289 1.289 26 H -0.290 1.290 27 H -0.279 1.279 28 C 0.108 3.892 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.128 0.872 41 H 0.132 0.868 42 H 0.116 0.884 43 H 0.035 0.965 44 H 0.084 0.916 45 H 0.255 0.745 46 H 0.047 0.953 47 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.858 -8.521 23.477 24.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.028 4.028 3 N -0.324 5.324 4 C 0.306 3.694 5 O -0.395 6.395 6 C 0.015 3.985 7 H 0.113 0.887 8 C -0.189 4.189 9 C -0.112 4.112 10 C -0.165 4.165 11 C -0.102 4.102 12 C -0.174 4.174 13 C -0.106 4.106 14 C -0.165 4.165 15 C 0.092 3.908 16 O -0.201 6.201 17 C -0.010 4.010 18 C 0.022 3.978 19 N -0.332 5.332 20 C -0.351 4.351 21 H 0.099 0.901 22 C -0.203 4.203 23 N -0.564 5.564 24 Si 0.744 3.256 25 H -0.216 1.216 26 H -0.216 1.216 27 H -0.205 1.205 28 C -0.019 4.019 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.110 0.890 34 H 0.114 0.886 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.145 0.855 41 H 0.149 0.851 42 H 0.134 0.866 43 H 0.052 0.948 44 H 0.102 0.898 45 H 0.065 0.935 46 H 0.065 0.935 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 0.940 -7.605 23.027 24.268 hybrid contribution 0.064 -0.388 -1.015 1.089 sum 1.005 -7.993 22.012 23.439 Atomic orbital electron populations 1.22340 0.95549 1.02675 1.02940 1.21715 0.94928 0.82770 1.03350 1.48111 1.64500 1.14034 1.05763 1.19865 0.78140 0.87032 0.84380 1.90722 1.46205 1.15680 1.86923 1.22378 1.00143 0.89936 0.86021 0.88666 1.22258 0.98179 0.99228 0.99243 1.20494 1.01960 0.96554 0.92190 1.19848 1.05271 0.95430 0.95925 1.20876 0.98514 0.99490 0.91368 1.21006 1.02420 0.94841 0.99176 1.20928 0.98238 0.96040 0.95402 1.20644 1.03675 1.00917 0.91310 1.18795 0.95330 0.92583 0.84131 1.86084 1.88019 1.34672 1.11371 1.24107 0.98858 0.98416 0.79581 1.22872 0.91537 0.99185 0.84169 1.45641 1.02489 1.83551 1.01481 1.18988 0.94740 1.41273 0.80050 0.90073 1.24806 0.95713 1.01537 0.98280 1.69816 1.01059 1.52197 1.33372 0.86068 0.77437 0.77307 0.84759 1.21617 1.21608 1.20486 1.22991 0.94964 0.97071 0.86841 0.91460 0.93001 0.90578 0.90900 0.89034 0.88629 0.89573 0.89483 0.90052 0.85859 0.85974 0.85450 0.85054 0.86637 0.94759 0.89752 0.93542 0.93468 0.94676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.07 9.78 37.16 0.36 -1.70 16 2 C 0.10 1.16 4.76 -4.04 -0.02 1.14 16 3 N -0.59 -9.31 2.69 -167.90 -0.45 -9.76 16 4 C 0.52 8.62 6.97 -10.98 -0.08 8.55 16 5 O -0.52 -10.92 16.08 -13.80 -0.22 -11.14 16 6 C 0.08 0.97 2.34 -27.67 -0.06 0.90 16 7 H 0.10 1.05 6.21 -51.93 -0.32 0.73 16 8 C -0.15 -1.53 5.13 -26.48 -0.14 -1.66 16 9 C -0.08 -0.61 5.86 -27.81 -0.16 -0.78 16 10 C -0.16 -1.68 5.75 -104.44 -0.60 -2.28 16 11 C -0.08 -0.72 9.67 -39.53 -0.38 -1.11 16 12 C -0.16 -1.28 10.04 -39.61 -0.40 -1.68 16 13 C -0.09 -0.78 10.04 -39.66 -0.40 -1.18 16 14 C -0.15 -1.64 9.94 -39.34 -0.39 -2.03 16 15 C 0.14 1.72 6.47 -39.19 -0.25 1.47 16 16 O -0.29 -4.31 9.50 -38.60 -0.37 -4.68 16 17 C 0.09 1.84 4.38 -70.15 -0.31 1.53 16 18 C 0.15 3.36 6.46 -2.84 -0.02 3.34 16 19 N -0.61 -15.26 3.70 -177.89 -0.66 -15.92 16 20 C -0.22 -6.18 10.69 -15.06 -0.16 -6.34 16 21 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 22 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 23 N -0.92 -26.78 11.29 55.49 0.63 -26.16 16 24 Si 0.91 21.92 29.56 -169.99 -5.02 16.89 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 28 C 0.11 2.21 8.46 -2.97 -0.03 2.18 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.56 7.07 -51.93 -0.37 0.20 16 31 H 0.08 1.09 6.42 -51.93 -0.33 0.76 16 32 H 0.07 0.66 4.79 -51.93 -0.25 0.41 16 33 H 0.09 1.19 6.27 -51.93 -0.33 0.87 16 34 H 0.10 0.81 6.29 -51.93 -0.33 0.48 16 35 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 39 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 40 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 41 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 42 H 0.12 2.55 7.25 -51.93 -0.38 2.17 16 43 H 0.03 0.74 5.30 -51.93 -0.28 0.47 16 44 H 0.08 2.19 6.87 -51.93 -0.36 1.84 16 45 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 46 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 47 H 0.04 0.66 7.20 -51.93 -0.37 0.28 16 LS Contribution 369.15 15.07 5.56 5.56 Total: -1.00 -33.63 369.15 -10.32 -43.95 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -6.66 Total: 1.18 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: -3.13 Total: 0.08 kcal Atomic # 7 Polarization: -51.35 SS G_CDS: -0.48 Total: -51.83 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -0.59 Total: -15.82 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.63 -10.32 -43.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000956969689.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.957 kcal (2) G-P(sol) polarization free energy of solvation -33.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds