Wall clock time and date at job start Tue Mar 31 2020 16:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.47214 * 2 1 4 4 C 1.34778 * 119.99629 * 87.07114 * 3 2 1 5 5 O 1.21278 * 120.00160 * 184.71988 * 4 3 2 6 6 C 1.50705 * 120.00111 * 4.71386 * 4 3 2 7 7 H 1.09003 * 109.67493 * 315.18090 * 6 4 3 8 8 C 1.53399 * 109.67917 * 75.74228 * 6 4 3 9 9 C 1.53078 * 108.29594 * 184.42825 * 8 6 4 10 10 C 1.50768 * 109.67878 * 311.78306 * 9 8 6 11 11 C 1.38505 * 118.76037 * 197.62008 * 10 9 8 12 12 C 1.38104 * 120.31439 * 180.44679 * 11 10 9 13 13 C 1.38296 * 119.98177 * 359.97368 * 12 11 10 14 14 C 1.37963 * 119.95947 * 359.90185 * 13 12 11 15 15 C 1.38369 * 121.40378 * 17.86838 * 10 9 8 16 16 O 1.35843 * 121.80475 * 359.45432 * 15 10 9 17 17 C 1.46498 * 120.00239 * 267.07166 * 3 2 1 18 18 C 1.53948 * 113.74094 * 34.29224 * 17 3 2 19 19 N 1.47816 * 86.03398 * 222.08411 * 18 17 3 20 20 C 1.36938 * 134.45632 * 204.64557 * 19 18 17 21 21 H 1.07999 * 120.00145 * 184.61239 * 20 19 18 22 22 C 1.38809 * 119.99892 * 4.61090 * 20 19 18 23 23 N 1.31624 * 119.99957 * 5.37053 * 22 20 19 24 24 Si 1.86800 * 120.00206 * 185.37104 * 22 20 19 25 25 H 1.48498 * 109.47341 * 94.99230 * 24 22 20 26 26 H 1.48501 * 109.47025 * 214.99451 * 24 22 20 27 27 H 1.48505 * 109.46876 * 334.98967 * 24 22 20 28 28 C 1.47575 * 91.05094 * 24.54818 * 19 18 17 29 29 H 1.09004 * 109.47064 * 174.36137 * 1 2 3 30 30 H 1.09006 * 109.46482 * 294.35689 * 1 2 3 31 31 H 1.08994 * 109.47484 * 54.35868 * 1 2 3 32 32 H 1.08995 * 109.47447 * 120.00327 * 2 1 3 33 33 H 1.09002 * 109.46754 * 240.00811 * 2 1 3 34 34 H 1.09001 * 109.70054 * 304.12385 * 8 6 4 35 35 H 1.08993 * 109.70198 * 64.72503 * 8 6 4 36 36 H 1.09003 * 109.43581 * 191.71814 * 9 8 6 37 37 H 1.09000 * 109.40107 * 71.82858 * 9 8 6 38 38 H 1.07998 * 119.84273 * 0.44836 * 11 10 9 39 39 H 1.07996 * 120.00707 * 179.97438 * 12 11 10 40 40 H 1.08000 * 120.01837 * 179.97438 * 13 12 11 41 41 H 1.07999 * 119.89556 * 180.02562 * 14 13 12 42 42 H 1.09003 * 112.94629 * 165.88066 * 17 3 2 43 43 H 1.09000 * 113.77087 * 336.34829 * 18 17 3 44 44 H 1.08996 * 113.76781 * 107.74375 * 18 17 3 45 45 H 0.97004 * 119.99506 * 180.02562 * 23 22 20 46 46 H 1.09000 * 113.77006 * 221.14788 * 28 19 18 47 47 H 1.09007 * 113.76874 * 89.75707 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1868 2.0364 1.1657 5 8 2.5085 3.2057 1.1632 6 6 1.9750 1.3160 2.4724 7 1 1.0619 0.7230 2.4208 8 6 3.1719 0.3997 2.7570 9 6 2.8752 -0.3972 4.0298 10 6 2.3849 0.5343 5.1092 11 6 2.4105 0.1020 6.4248 12 6 1.9605 0.9254 7.4381 13 6 1.4819 2.1884 7.1410 14 6 1.4564 2.6254 5.8327 15 6 1.9100 1.7989 4.8093 16 8 1.8724 2.2657 3.5342 17 6 2.3237 2.0503 -1.2670 18 6 1.3972 1.6372 -2.4250 19 7 2.6190 1.6086 -3.2564 20 6 2.8711 1.7422 -4.5958 21 1 3.8739 1.6061 -4.9728 22 6 1.8375 2.0525 -5.4689 23 7 0.6379 2.3223 -4.9992 24 14 2.1492 2.0874 -7.3104 25 1 1.7792 0.7756 -7.9000 26 1 1.3286 3.1582 -7.9311 27 1 3.5875 2.3561 -7.5640 28 6 3.4579 1.3808 -2.0639 29 1 -0.3633 -1.0227 -0.1010 30 1 -0.3632 0.4239 0.9363 31 1 -0.3634 0.5988 -0.8351 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5137 -0.8901 34 1 3.3179 -0.2844 1.9210 35 1 4.0693 1.0014 2.9010 36 1 3.7845 -0.8954 4.3661 37 1 2.1093 -1.1436 3.8194 38 1 2.7843 -0.8838 6.6594 39 1 1.9824 0.5831 8.4621 40 1 1.1295 2.8327 7.9329 41 1 1.0828 3.6121 5.6019 42 1 2.4392 3.1289 -1.1609 43 1 0.9346 0.6595 -2.2902 44 1 0.6851 2.4097 -2.7149 45 1 -0.0844 2.5388 -5.6095 46 1 4.3881 1.9490 -2.0660 47 1 3.6020 0.3275 -1.8227 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000956969689.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:31 Heat of formation + Delta-G solvation = -2.587149 kcal Electronic energy + Delta-G solvation = -28670.013363 eV Core-core repulsion = 24819.329404 eV Total energy + Delta-G solvation = -3850.683959 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.18363 -41.02711 -39.37666 -38.17712 -36.66971 -35.24108 -34.12217 -31.87207 -31.48569 -31.12231 -29.53710 -27.53235 -26.63767 -25.08044 -24.94957 -24.22244 -23.41036 -21.97797 -20.83001 -19.94692 -19.24577 -18.80064 -18.16578 -17.85902 -17.24918 -16.96005 -16.52409 -16.19399 -15.84181 -15.58463 -15.34324 -15.19236 -14.98017 -14.89274 -14.41790 -14.23971 -14.10908 -13.91594 -13.67646 -13.52196 -13.32137 -13.22032 -12.91719 -12.83095 -12.68077 -12.44691 -12.41296 -12.19138 -12.13471 -12.07614 -11.96858 -11.83440 -11.54176 -11.42014 -10.89918 -10.76584 -9.71262 -9.68689 -9.12187 -8.95794 -7.92753 -5.28894 0.39374 0.47796 1.31125 1.44644 1.46932 1.52926 1.56727 2.40410 2.52070 2.82631 3.20541 3.26920 3.40888 3.46964 3.72550 3.77800 3.82805 3.85168 3.99601 4.15669 4.22204 4.26863 4.33059 4.35327 4.41797 4.48596 4.51938 4.63315 4.65496 4.71503 4.81658 4.83958 4.86408 4.94546 4.98470 5.05045 5.16437 5.16771 5.25755 5.37187 5.39133 5.46659 5.54363 5.62346 5.66079 5.88794 5.90328 6.29987 6.47814 6.87243 7.01817 7.56267 8.49230 9.22565 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.033275 B = 0.002468 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.276167 B =11342.316311 C =11475.993271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.090 3.910 3 N -0.585 5.585 4 C 0.516 3.484 5 O -0.576 6.576 6 C 0.081 3.919 7 H 0.119 0.881 8 C -0.146 4.146 9 C -0.070 4.070 10 C -0.170 4.170 11 C -0.085 4.085 12 C -0.153 4.153 13 C -0.091 4.091 14 C -0.171 4.171 15 C 0.101 3.899 16 O -0.325 6.325 17 C 0.114 3.886 18 C 0.156 3.844 19 N -0.636 5.636 20 C -0.234 4.234 21 H 0.086 0.914 22 C -0.065 4.065 23 N -0.951 5.951 24 Si 0.981 3.019 25 H -0.284 1.284 26 H -0.296 1.296 27 H -0.267 1.267 28 C 0.118 3.882 29 H 0.096 0.904 30 H 0.060 0.940 31 H 0.041 0.959 32 H 0.116 0.884 33 H 0.088 0.912 34 H 0.117 0.883 35 H 0.067 0.933 36 H 0.111 0.889 37 H 0.107 0.893 38 H 0.155 0.845 39 H 0.152 0.848 40 H 0.149 0.851 41 H 0.120 0.880 42 H 0.083 0.917 43 H 0.051 0.949 44 H 0.042 0.958 45 H 0.249 0.751 46 H 0.047 0.953 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.747 -12.098 25.667 28.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.031 4.031 3 N -0.317 5.317 4 C 0.304 3.696 5 O -0.455 6.455 6 C 0.022 3.978 7 H 0.136 0.864 8 C -0.184 4.184 9 C -0.107 4.107 10 C -0.170 4.170 11 C -0.103 4.103 12 C -0.171 4.171 13 C -0.109 4.109 14 C -0.190 4.190 15 C 0.057 3.943 16 O -0.239 6.239 17 C 0.009 3.991 18 C 0.030 3.970 19 N -0.364 5.364 20 C -0.362 4.362 21 H 0.104 0.896 22 C -0.259 4.259 23 N -0.599 5.599 24 Si 0.809 3.191 25 H -0.210 1.210 26 H -0.223 1.223 27 H -0.192 1.192 28 C -0.008 4.008 29 H 0.115 0.885 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.134 0.866 33 H 0.107 0.893 34 H 0.136 0.864 35 H 0.085 0.915 36 H 0.129 0.871 37 H 0.125 0.875 38 H 0.172 0.828 39 H 0.169 0.831 40 H 0.167 0.833 41 H 0.138 0.862 42 H 0.101 0.899 43 H 0.069 0.931 44 H 0.060 0.940 45 H 0.058 0.942 46 H 0.065 0.935 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.843 -11.233 25.257 27.704 hybrid contribution -0.215 0.748 -1.538 1.723 sum 1.629 -10.485 23.719 25.984 Atomic orbital electron populations 1.22316 0.95124 1.03893 1.01941 1.22055 0.95282 0.80477 1.05295 1.48036 1.64148 1.15339 1.04184 1.20645 0.76664 0.86499 0.85754 1.90692 1.48720 1.18314 1.87791 1.22380 1.02500 0.89453 0.83508 0.86388 1.22285 0.95886 0.98860 1.01376 1.20597 1.03774 0.96102 0.90195 1.20161 1.04635 0.94720 0.97525 1.21275 0.97680 1.00782 0.90534 1.21433 1.00783 0.94162 1.00701 1.21227 0.97867 0.96991 0.94791 1.20821 1.04811 1.00834 0.92506 1.19124 0.97697 0.94320 0.83156 1.86018 1.88918 1.36267 1.12741 1.23350 0.97672 0.97030 0.81061 1.22719 0.90687 0.98604 0.85009 1.45954 1.04467 1.84061 1.01878 1.19368 0.94995 1.40304 0.81542 0.89640 1.25664 0.95645 1.01939 1.02627 1.70018 1.01785 1.53684 1.34415 0.85018 0.77641 0.76989 0.79419 1.21049 1.22287 1.19200 1.23092 0.94426 0.98677 0.84641 0.88540 0.92128 0.94030 0.86592 0.89315 0.86442 0.91471 0.87113 0.87497 0.82763 0.83076 0.83320 0.86204 0.89863 0.93141 0.93985 0.94168 0.93464 0.91379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.76 9.78 71.98 0.70 -3.05 16 2 C 0.09 1.96 4.76 86.38 0.41 2.37 16 3 N -0.58 -18.29 2.69 -803.52 -2.16 -20.45 16 4 C 0.52 17.37 6.97 87.66 0.61 17.98 16 5 O -0.58 -25.62 16.08 15.48 0.25 -25.37 16 6 C 0.08 2.00 2.34 29.98 0.07 2.07 16 7 H 0.12 2.32 6.21 -2.39 -0.01 2.30 16 8 C -0.15 -2.56 5.13 30.75 0.16 -2.40 16 9 C -0.07 -0.85 5.86 29.90 0.18 -0.68 16 10 C -0.17 -3.03 5.75 -19.75 -0.11 -3.14 16 11 C -0.08 -1.13 9.67 22.30 0.22 -0.92 16 12 C -0.15 -2.00 10.04 22.25 0.22 -1.77 16 13 C -0.09 -1.47 10.04 22.22 0.22 -1.25 16 14 C -0.17 -3.88 9.94 22.42 0.22 -3.65 16 15 C 0.10 2.51 6.47 22.52 0.15 2.66 16 16 O -0.33 -9.97 9.50 -73.27 -0.70 -10.66 16 17 C 0.11 4.62 4.38 46.75 0.20 4.83 16 18 C 0.16 7.32 6.46 86.44 0.56 7.88 16 19 N -0.64 -32.67 3.70 -716.71 -2.65 -35.32 16 20 C -0.23 -13.12 10.69 84.03 0.90 -12.23 16 21 H 0.09 4.58 7.83 -2.91 -0.02 4.55 16 22 C -0.07 -3.73 5.50 84.86 0.47 -3.26 16 23 N -0.95 -57.42 11.29 21.65 0.24 -57.18 16 24 Si 0.98 45.69 29.56 68.60 2.03 47.71 16 25 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 26 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 27 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 28 C 0.12 4.75 8.46 86.49 0.73 5.49 16 29 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 30 H 0.06 1.19 7.07 -2.38 -0.02 1.18 16 31 H 0.04 1.19 6.42 -2.39 -0.02 1.17 16 32 H 0.12 1.57 4.79 -2.39 -0.01 1.56 16 33 H 0.09 2.05 6.27 -2.39 -0.01 2.04 16 34 H 0.12 1.48 6.29 -2.39 -0.02 1.47 16 35 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.15 1.07 8.06 -2.91 -0.02 1.05 16 39 H 0.15 1.08 8.06 -2.91 -0.02 1.05 16 40 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 41 H 0.12 2.79 8.06 -2.91 -0.02 2.77 16 42 H 0.08 3.94 7.25 -2.39 -0.02 3.93 16 43 H 0.05 2.21 5.30 -2.39 -0.01 2.19 16 44 H 0.04 2.33 6.87 -2.39 -0.02 2.31 16 45 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 46 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 47 H 0.07 2.36 7.20 -2.38 -0.02 2.34 16 Total: -1.00 -78.87 369.15 3.90 -74.96 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: 0.98 Total: 15.37 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: 5.91 Total: 10.93 kcal Atomic # 7 Polarization: -108.38 SS G_CDS: -4.57 Total: -112.95 kcal Atomic # 8 Polarization: -35.59 SS G_CDS: -0.45 Total: -36.04 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.71 kcal Total: -78.87 3.90 -74.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000956969689.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.375 kcal (2) G-P(sol) polarization free energy of solvation -78.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds