Wall clock time and date at job start Tue Mar 31 2020 16:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.47017 * 2 1 4 4 C 1.34776 * 119.99922 * 93.03807 * 3 2 1 5 5 O 1.21284 * 119.99424 * 184.48306 * 4 3 2 6 6 C 1.50696 * 120.00140 * 4.48019 * 4 3 2 7 7 H 1.09001 * 110.66572 * 50.97718 * 6 4 3 8 8 C 1.54708 * 110.74816 * 287.76784 * 6 4 3 9 9 C 1.51645 * 101.92168 * 216.17854 * 8 6 4 10 10 C 1.38925 * 107.03225 * 15.47100 * 9 8 6 11 11 C 1.39244 * 118.87886 * 180.68504 * 10 9 8 12 12 C 1.37977 * 120.23533 * 359.66066 * 11 10 9 13 13 C 1.38243 * 120.35205 * 359.77534 * 12 11 10 14 14 C 1.37696 * 132.17908 * 195.78071 * 9 8 6 15 15 C 1.50696 * 120.01144 * 359.44883 * 14 9 8 16 16 O 1.36129 * 111.23258 * 0.94496 * 10 9 8 17 17 C 1.46504 * 119.99709 * 273.03693 * 3 2 1 18 18 C 1.53948 * 113.74070 * 222.33008 * 17 3 2 19 19 N 1.47574 * 86.11817 * 222.05200 * 18 17 3 20 20 C 1.36934 * 134.49001 * 204.64323 * 19 18 17 21 21 H 1.08006 * 120.00430 * 179.97438 * 20 19 18 22 22 C 1.38819 * 120.00237 * 359.97438 * 20 19 18 23 23 N 1.31615 * 119.99657 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99981 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47388 * 60.00204 * 24 22 20 26 26 H 1.48503 * 109.47263 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47637 * 299.99858 * 24 22 20 28 28 C 1.47572 * 91.01664 * 24.64094 * 19 18 17 29 29 H 1.09001 * 109.46983 * 185.99629 * 1 2 3 30 30 H 1.08998 * 109.47077 * 305.99764 * 1 2 3 31 31 H 1.09001 * 109.46992 * 66.00224 * 1 2 3 32 32 H 1.09000 * 109.47021 * 239.99661 * 2 1 3 33 33 H 1.09004 * 109.46961 * 120.00119 * 2 1 3 34 34 H 1.08999 * 110.93878 * 98.01870 * 8 6 4 35 35 H 1.09002 * 110.93807 * 334.33236 * 8 6 4 36 36 H 1.07994 * 119.88255 * 179.68601 * 11 10 9 37 37 H 1.07999 * 119.82399 * 180.02562 * 12 11 10 38 38 H 1.08001 * 120.11890 * 180.46512 * 13 12 11 39 39 H 1.08999 * 109.46926 * 90.00207 * 15 14 9 40 40 H 1.08992 * 109.47443 * 330.00215 * 15 14 9 41 41 H 1.08996 * 109.46923 * 209.99843 * 15 14 9 42 42 H 1.08997 * 112.94723 * 354.06827 * 17 3 2 43 43 H 1.09000 * 113.76993 * 336.35770 * 18 17 3 44 44 H 1.09000 * 113.76665 * 107.74629 * 18 17 3 45 45 H 0.97001 * 119.99700 * 180.02562 * 23 22 20 46 46 H 1.09004 * 113.77181 * 221.05996 * 28 19 18 47 47 H 1.09002 * 113.87449 * 89.67403 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3013 1.9959 1.1656 5 8 2.6274 3.1641 1.1714 6 6 2.2124 1.2318 2.4614 7 1 2.7722 0.2988 2.3970 8 6 0.7365 0.9605 2.8375 9 6 0.7691 1.0907 4.3480 10 6 1.9611 1.7243 4.6762 11 6 2.2517 1.9572 6.0179 12 6 1.3627 1.5688 6.9990 13 6 0.1743 0.9496 6.6593 14 6 -0.1174 0.7053 5.3286 15 6 -1.4076 0.0234 4.9526 16 8 2.6795 2.0311 3.5613 17 6 2.1991 2.0942 -1.2670 18 6 3.4958 2.9214 -1.3332 19 7 2.6759 3.9696 -1.9710 20 6 2.9411 5.0139 -2.8161 21 1 2.1393 5.6562 -3.1493 22 6 4.2408 5.2472 -3.2447 23 7 5.2180 4.4649 -2.8382 24 14 4.6024 6.6712 -4.3981 25 1 4.2041 7.9467 -3.7501 26 1 6.0554 6.7044 -4.7033 27 1 3.8356 6.4954 -5.6575 28 6 1.4553 3.4405 -1.3322 29 1 -0.3633 -1.0221 0.1074 30 1 -0.3633 0.6040 0.8314 31 1 -0.3633 0.4180 -0.9388 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 0.4369 -0.0442 2.5395 35 1 0.0781 1.7089 2.3962 36 1 3.1761 2.4440 6.2916 37 1 1.5946 1.7530 8.0375 38 1 -0.5223 0.6538 7.4298 39 1 -1.2533 -1.0553 4.9234 40 1 -1.7297 0.3710 3.9711 41 1 -2.1728 0.2610 5.6915 42 1 2.0361 1.4601 -2.1385 43 1 3.8872 3.2036 -0.3558 44 1 4.2547 2.4967 -1.9902 45 1 6.1262 4.6281 -3.1374 46 1 0.5851 3.4302 -1.9885 47 1 1.2455 3.8743 -0.3545 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957281116.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:03 Heat of formation + Delta-G solvation = 35.420253 kcal Electronic energy + Delta-G solvation = -28978.788156 eV Core-core repulsion = 25129.752322 eV Total energy + Delta-G solvation = -3849.035834 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.59787 -39.86499 -37.87059 -36.63840 -35.60306 -33.50600 -32.08797 -31.34254 -30.22403 -29.89436 -27.46433 -26.87886 -24.67463 -24.63921 -23.37858 -23.00993 -22.19452 -21.07686 -20.16819 -18.62786 -17.54935 -17.04814 -16.86035 -16.54716 -16.06053 -15.43919 -15.01054 -14.86001 -14.60447 -14.19574 -14.00060 -13.87291 -13.72427 -13.68842 -13.30489 -13.05058 -13.00634 -12.60459 -12.57757 -12.42487 -12.28610 -11.90927 -11.76248 -11.66078 -11.40653 -11.23347 -11.14764 -11.13049 -10.93217 -10.78656 -10.61043 -10.07678 -9.94718 -9.42600 -9.27000 -8.88352 -8.58764 -8.26258 -8.15008 -6.72247 -5.65958 -2.96900 1.08305 1.19195 2.60372 2.83663 3.40564 3.46212 3.50051 3.51504 3.58284 4.13018 4.27742 4.51322 4.56997 4.64667 4.73239 4.76840 4.90581 4.98249 5.08986 5.11039 5.20536 5.29391 5.30843 5.34469 5.39578 5.45099 5.51388 5.56584 5.58502 5.64377 5.69470 5.73165 5.85334 5.90428 6.10618 6.15409 6.22641 6.33320 6.36548 6.43106 6.60986 6.63269 6.96563 7.05607 7.36040 7.59751 7.65454 7.73763 8.08308 8.47796 9.15244 9.81250 10.72203 11.51334 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.020019 B = 0.002965 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.334757 B = 9440.484025 C =10236.273741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.099 3.901 3 N -0.597 5.597 4 C 0.511 3.489 5 O -0.485 6.485 6 C 0.065 3.935 7 H 0.108 0.892 8 C -0.094 4.094 9 C -0.177 4.177 10 C 0.116 3.884 11 C -0.144 4.144 12 C -0.080 4.080 13 C -0.155 4.155 14 C -0.035 4.035 15 C -0.116 4.116 16 O -0.272 6.272 17 C 0.091 3.909 18 C 0.154 3.846 19 N -0.602 5.602 20 C -0.218 4.218 21 H 0.079 0.921 22 C -0.009 4.009 23 N -0.920 5.920 24 Si 0.912 3.088 25 H -0.286 1.286 26 H -0.290 1.290 27 H -0.285 1.285 28 C 0.112 3.888 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.126 0.874 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.106 0.894 43 H 0.054 0.946 44 H 0.067 0.933 45 H 0.253 0.747 46 H 0.036 0.964 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.621 -16.481 16.937 26.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.025 4.025 3 N -0.332 5.332 4 C 0.296 3.704 5 O -0.357 6.357 6 C 0.005 3.995 7 H 0.126 0.874 8 C -0.132 4.132 9 C -0.178 4.178 10 C 0.070 3.930 11 C -0.163 4.163 12 C -0.098 4.098 13 C -0.173 4.173 14 C -0.035 4.035 15 C -0.173 4.173 16 O -0.184 6.184 17 C -0.012 4.012 18 C 0.028 3.972 19 N -0.328 5.328 20 C -0.346 4.346 21 H 0.096 0.904 22 C -0.205 4.205 23 N -0.567 5.567 24 Si 0.743 3.257 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.212 1.212 28 C -0.015 4.015 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.119 0.881 35 H 0.114 0.886 36 H 0.147 0.853 37 H 0.148 0.852 38 H 0.144 0.856 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.124 0.876 43 H 0.072 0.928 44 H 0.086 0.914 45 H 0.063 0.937 46 H 0.055 0.945 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.024 -15.450 16.670 25.713 hybrid contribution 0.223 0.708 -0.593 0.950 sum -11.801 -14.743 16.076 24.800 Atomic orbital electron populations 1.22423 0.95951 1.02026 1.03373 1.21639 0.94542 0.83219 1.03090 1.48039 1.65401 1.13666 1.06132 1.19802 0.79017 0.87624 0.83999 1.90844 1.43772 1.15310 1.85817 1.23266 0.95365 0.94010 0.86868 0.87448 1.21884 0.95467 1.04127 0.91682 1.20568 0.96071 1.06207 0.94968 1.19654 0.90210 0.94627 0.88507 1.20265 1.01882 1.05668 0.88464 1.20839 0.93324 0.96901 0.98776 1.20899 0.98224 1.03086 0.95100 1.19086 0.95364 0.97063 0.92017 1.20804 0.93927 1.00198 1.02335 1.86987 1.56867 1.58959 1.15585 1.24145 1.01834 0.92157 0.83017 1.22707 0.91684 0.85662 0.97109 1.45617 1.03024 1.33245 1.50962 1.18941 0.93207 1.04415 1.18032 0.90370 1.24782 0.95440 0.99416 1.00888 1.69820 0.99588 1.39468 1.47851 0.86195 0.76983 0.82060 0.80484 1.21237 1.21597 1.21155 1.22920 0.91460 0.90768 0.96388 0.91671 0.91965 0.91762 0.89914 0.90963 0.88082 0.88554 0.85309 0.85168 0.85596 0.90896 0.91395 0.91301 0.87574 0.92822 0.91437 0.93700 0.94541 0.93489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.49 9.45 37.16 0.35 -1.14 16 2 C 0.10 0.98 5.65 -4.04 -0.02 0.95 16 3 N -0.60 -9.14 2.73 -167.90 -0.46 -9.60 16 4 C 0.51 8.92 6.43 -10.99 -0.07 8.85 16 5 O -0.49 -11.25 12.30 -13.34 -0.16 -11.42 16 6 C 0.06 0.88 3.04 -26.99 -0.08 0.80 16 7 H 0.11 1.18 7.13 -51.93 -0.37 0.81 16 8 C -0.09 -1.01 3.97 -26.52 -0.11 -1.12 16 9 C -0.18 -2.06 6.07 -104.10 -0.63 -2.70 16 10 C 0.12 1.60 7.04 -38.95 -0.27 1.32 16 11 C -0.14 -1.68 10.06 -39.30 -0.40 -2.08 16 12 C -0.08 -0.74 10.02 -39.67 -0.40 -1.14 16 13 C -0.15 -1.36 9.72 -39.52 -0.38 -1.75 16 14 C -0.04 -0.34 5.87 -104.76 -0.61 -0.95 16 15 C -0.12 -0.78 9.91 36.00 0.36 -0.42 16 16 O -0.27 -4.48 10.41 -39.04 -0.41 -4.89 16 17 C 0.09 1.76 4.61 -70.14 -0.32 1.44 16 18 C 0.15 3.93 6.77 -2.98 -0.02 3.91 16 19 N -0.60 -16.63 3.70 -178.10 -0.66 -17.29 16 20 C -0.22 -6.50 10.70 -15.06 -0.16 -6.66 16 21 H 0.08 2.23 7.83 -52.48 -0.41 1.82 16 22 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 23 N -0.92 -28.69 11.38 55.49 0.63 -28.06 16 24 Si 0.91 23.15 29.55 -169.99 -5.02 18.13 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 27 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 28 C 0.11 2.51 8.27 -2.98 -0.02 2.48 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.53 5.19 -51.93 -0.27 0.26 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.75 8.03 -51.93 -0.42 0.33 16 33 H 0.07 0.56 5.70 -51.93 -0.30 0.27 16 34 H 0.10 0.76 6.56 -51.93 -0.34 0.42 16 35 H 0.10 1.12 7.16 -51.93 -0.37 0.75 16 36 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 37 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 38 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.45 7.78 -51.93 -0.40 0.04 16 41 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 42 H 0.11 1.86 8.01 -51.93 -0.42 1.44 16 43 H 0.05 1.51 5.65 -51.93 -0.29 1.22 16 44 H 0.07 1.85 7.16 -51.93 -0.37 1.48 16 45 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 46 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 47 H 0.05 1.13 6.36 -51.93 -0.33 0.80 16 LS Contribution 370.18 15.07 5.58 5.58 Total: -1.00 -37.17 370.18 -10.20 -47.37 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -6.81 Total: -1.29 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: -2.90 Total: 1.45 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: -0.49 Total: -54.94 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -0.57 Total: -16.30 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -5.02 Total: 18.13 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -37.17 -10.20 -47.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957281116.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.795 kcal (2) G-P(sol) polarization free energy of solvation -37.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds