Wall clock time and date at job start Tue Mar 31 2020 16:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.47017 * 2 1 4 4 C 1.34776 * 119.99922 * 93.03807 * 3 2 1 5 5 O 1.21284 * 119.99424 * 184.48306 * 4 3 2 6 6 C 1.50696 * 120.00140 * 4.48019 * 4 3 2 7 7 H 1.09001 * 110.66572 * 50.97718 * 6 4 3 8 8 C 1.54708 * 110.74816 * 287.76784 * 6 4 3 9 9 C 1.51645 * 101.92168 * 216.17854 * 8 6 4 10 10 C 1.38925 * 107.03225 * 15.47100 * 9 8 6 11 11 C 1.39244 * 118.87886 * 180.68504 * 10 9 8 12 12 C 1.37977 * 120.23533 * 359.66066 * 11 10 9 13 13 C 1.38243 * 120.35205 * 359.77534 * 12 11 10 14 14 C 1.37696 * 132.17908 * 195.78071 * 9 8 6 15 15 C 1.50696 * 120.01144 * 359.44883 * 14 9 8 16 16 O 1.36129 * 111.23258 * 0.94496 * 10 9 8 17 17 C 1.46504 * 119.99709 * 273.03693 * 3 2 1 18 18 C 1.53948 * 113.74070 * 222.33008 * 17 3 2 19 19 N 1.47574 * 86.11817 * 222.05200 * 18 17 3 20 20 C 1.36934 * 134.49001 * 204.64323 * 19 18 17 21 21 H 1.08006 * 120.00430 * 179.97438 * 20 19 18 22 22 C 1.38819 * 120.00237 * 359.97438 * 20 19 18 23 23 N 1.31615 * 119.99657 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99981 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47388 * 60.00204 * 24 22 20 26 26 H 1.48503 * 109.47263 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47637 * 299.99858 * 24 22 20 28 28 C 1.47572 * 91.01664 * 24.64094 * 19 18 17 29 29 H 1.09001 * 109.46983 * 185.99629 * 1 2 3 30 30 H 1.08998 * 109.47077 * 305.99764 * 1 2 3 31 31 H 1.09001 * 109.46992 * 66.00224 * 1 2 3 32 32 H 1.09000 * 109.47021 * 239.99661 * 2 1 3 33 33 H 1.09004 * 109.46961 * 120.00119 * 2 1 3 34 34 H 1.08999 * 110.93878 * 98.01870 * 8 6 4 35 35 H 1.09002 * 110.93807 * 334.33236 * 8 6 4 36 36 H 1.07994 * 119.88255 * 179.68601 * 11 10 9 37 37 H 1.07999 * 119.82399 * 180.02562 * 12 11 10 38 38 H 1.08001 * 120.11890 * 180.46512 * 13 12 11 39 39 H 1.08999 * 109.46926 * 90.00207 * 15 14 9 40 40 H 1.08992 * 109.47443 * 330.00215 * 15 14 9 41 41 H 1.08996 * 109.46923 * 209.99843 * 15 14 9 42 42 H 1.08997 * 112.94723 * 354.06827 * 17 3 2 43 43 H 1.09000 * 113.76993 * 336.35770 * 18 17 3 44 44 H 1.09000 * 113.76665 * 107.74629 * 18 17 3 45 45 H 0.97001 * 119.99700 * 180.02562 * 23 22 20 46 46 H 1.09004 * 113.77181 * 221.05996 * 28 19 18 47 47 H 1.09002 * 113.87449 * 89.67403 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3013 1.9959 1.1656 5 8 2.6274 3.1641 1.1714 6 6 2.2124 1.2318 2.4614 7 1 2.7722 0.2988 2.3970 8 6 0.7365 0.9605 2.8375 9 6 0.7691 1.0907 4.3480 10 6 1.9611 1.7243 4.6762 11 6 2.2517 1.9572 6.0179 12 6 1.3627 1.5688 6.9990 13 6 0.1743 0.9496 6.6593 14 6 -0.1174 0.7053 5.3286 15 6 -1.4076 0.0234 4.9526 16 8 2.6795 2.0311 3.5613 17 6 2.1991 2.0942 -1.2670 18 6 3.4958 2.9214 -1.3332 19 7 2.6759 3.9696 -1.9710 20 6 2.9411 5.0139 -2.8161 21 1 2.1393 5.6562 -3.1493 22 6 4.2408 5.2472 -3.2447 23 7 5.2180 4.4649 -2.8382 24 14 4.6024 6.6712 -4.3981 25 1 4.2041 7.9467 -3.7501 26 1 6.0554 6.7044 -4.7033 27 1 3.8356 6.4954 -5.6575 28 6 1.4553 3.4405 -1.3322 29 1 -0.3633 -1.0221 0.1074 30 1 -0.3633 0.6040 0.8314 31 1 -0.3633 0.4180 -0.9388 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 0.4369 -0.0442 2.5395 35 1 0.0781 1.7089 2.3962 36 1 3.1761 2.4440 6.2916 37 1 1.5946 1.7530 8.0375 38 1 -0.5223 0.6538 7.4298 39 1 -1.2533 -1.0553 4.9234 40 1 -1.7297 0.3710 3.9711 41 1 -2.1728 0.2610 5.6915 42 1 2.0361 1.4601 -2.1385 43 1 3.8872 3.2036 -0.3558 44 1 4.2547 2.4967 -1.9902 45 1 6.1262 4.6281 -3.1374 46 1 0.5851 3.4302 -1.9885 47 1 1.2455 3.8743 -0.3545 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957281116.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:02 Heat of formation + Delta-G solvation = 11.509825 kcal Electronic energy + Delta-G solvation = -28979.824990 eV Core-core repulsion = 25129.752322 eV Total energy + Delta-G solvation = -3850.072668 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.61789 -41.23014 -38.98049 -38.17101 -36.86424 -34.46139 -34.04466 -32.23261 -31.28454 -30.91503 -29.25264 -27.67642 -26.61019 -25.95241 -24.57504 -24.25639 -23.08124 -21.88750 -21.81223 -19.99556 -18.82805 -18.56964 -18.11847 -17.72167 -17.05137 -16.92263 -16.69362 -16.10851 -16.08775 -15.61296 -14.98984 -14.87663 -14.67823 -14.55962 -14.33844 -14.28453 -14.11240 -13.85845 -13.73315 -13.41767 -13.38116 -13.15798 -13.00874 -12.86753 -12.74457 -12.67494 -12.50302 -12.35455 -12.09722 -12.00213 -11.89097 -11.80320 -11.70461 -11.49877 -10.99804 -10.50449 -9.62870 -9.59182 -9.13908 -8.91540 -7.92823 -5.26890 0.31294 0.38235 1.38440 1.40766 1.46236 1.52012 1.59765 2.38466 2.49295 2.72216 3.15783 3.26187 3.33117 3.49015 3.66282 3.77312 3.82967 3.91721 4.11124 4.12394 4.23564 4.24980 4.44528 4.44782 4.50233 4.54962 4.61183 4.65244 4.65904 4.81282 4.84252 4.90242 4.91541 4.95095 5.01001 5.05250 5.20898 5.28034 5.31161 5.37309 5.46513 5.46591 5.49336 5.60552 5.69809 5.84200 5.89659 6.18710 6.41242 6.88178 7.15070 7.57106 8.54581 9.24336 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.020019 B = 0.002965 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.334757 B = 9440.484025 C =10236.273741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.088 3.912 3 N -0.589 5.589 4 C 0.505 3.495 5 O -0.557 6.557 6 C 0.068 3.932 7 H 0.137 0.863 8 C -0.080 4.080 9 C -0.185 4.185 10 C 0.074 3.926 11 C -0.165 4.165 12 C -0.078 4.078 13 C -0.150 4.150 14 C -0.038 4.038 15 C -0.115 4.115 16 O -0.316 6.316 17 C 0.131 3.869 18 C 0.151 3.849 19 N -0.632 5.632 20 C -0.239 4.239 21 H 0.083 0.917 22 C -0.070 4.070 23 N -0.955 5.955 24 Si 0.986 3.014 25 H -0.282 1.282 26 H -0.292 1.292 27 H -0.267 1.267 28 C 0.113 3.887 29 H 0.101 0.899 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.141 0.859 35 H 0.084 0.916 36 H 0.124 0.876 37 H 0.159 0.841 38 H 0.159 0.841 39 H 0.091 0.909 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.137 0.863 43 H 0.018 0.982 44 H 0.039 0.961 45 H 0.248 0.752 46 H 0.060 0.940 47 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.644 -19.294 17.769 30.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.033 4.033 3 N -0.323 5.323 4 C 0.292 3.708 5 O -0.434 6.434 6 C 0.008 3.992 7 H 0.154 0.846 8 C -0.117 4.117 9 C -0.186 4.186 10 C 0.029 3.971 11 C -0.183 4.183 12 C -0.096 4.096 13 C -0.168 4.168 14 C -0.038 4.038 15 C -0.171 4.171 16 O -0.230 6.230 17 C 0.027 3.973 18 C 0.024 3.976 19 N -0.359 5.359 20 C -0.367 4.367 21 H 0.101 0.899 22 C -0.263 4.263 23 N -0.603 5.603 24 Si 0.813 3.187 25 H -0.209 1.209 26 H -0.218 1.218 27 H -0.192 1.192 28 C -0.013 4.013 29 H 0.119 0.881 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.117 0.883 33 H 0.119 0.881 34 H 0.159 0.841 35 H 0.102 0.898 36 H 0.143 0.857 37 H 0.177 0.823 38 H 0.176 0.824 39 H 0.109 0.891 40 H 0.088 0.912 41 H 0.102 0.898 42 H 0.154 0.846 43 H 0.036 0.964 44 H 0.057 0.943 45 H 0.057 0.943 46 H 0.078 0.922 47 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -15.112 -18.337 17.519 29.522 hybrid contribution 1.115 1.559 -0.695 2.039 sum -13.997 -16.779 16.824 27.577 Atomic orbital electron populations 1.22402 0.94094 1.04140 1.02707 1.22123 0.96015 0.79714 1.05412 1.48018 1.64609 1.15600 1.04065 1.20630 0.77354 0.87060 0.85737 1.90812 1.46967 1.18623 1.87019 1.23347 0.98061 0.93535 0.84210 0.84585 1.21867 0.92814 1.05831 0.91179 1.20749 0.95772 1.06416 0.95695 1.20049 0.91582 0.97014 0.88467 1.20539 1.02740 1.06471 0.88581 1.21210 0.92957 0.95920 0.99527 1.21369 0.98204 1.01551 0.95696 1.19524 0.96007 0.96342 0.91898 1.20884 0.92460 1.00919 1.02865 1.86921 1.58367 1.60586 1.17115 1.23435 0.96297 0.91723 0.85864 1.22502 0.93641 0.87040 0.94381 1.46066 1.05414 1.33339 1.51039 1.19412 0.93731 1.05272 1.18293 0.89883 1.25744 0.95210 1.02361 1.02977 1.70046 0.99619 1.41272 1.49375 0.85058 0.76584 0.78373 0.78722 1.20872 1.21768 1.19242 1.22968 0.90975 0.92066 0.95315 0.88079 0.92287 0.92874 0.88271 0.88086 0.84068 0.89799 0.85749 0.82350 0.82358 0.89055 0.91235 0.89824 0.84591 0.96388 0.94280 0.94279 0.92188 0.95438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.20 9.45 71.98 0.68 -1.52 16 2 C 0.09 1.45 5.65 86.38 0.49 1.94 16 3 N -0.59 -17.71 2.73 -803.50 -2.20 -19.91 16 4 C 0.50 18.25 6.43 87.66 0.56 18.81 16 5 O -0.56 -27.91 12.30 15.02 0.18 -27.73 16 6 C 0.07 1.84 3.04 30.43 0.09 1.94 16 7 H 0.14 2.79 7.13 -2.39 -0.02 2.77 16 8 C -0.08 -1.57 3.97 30.73 0.12 -1.45 16 9 C -0.19 -4.07 6.07 -19.53 -0.12 -4.19 16 10 C 0.07 2.08 7.04 22.68 0.16 2.24 16 11 C -0.16 -3.92 10.06 22.45 0.23 -3.69 16 12 C -0.08 -1.31 10.02 22.21 0.22 -1.08 16 13 C -0.15 -2.16 9.72 22.31 0.22 -1.95 16 14 C -0.04 -0.61 5.87 -19.96 -0.12 -0.73 16 15 C -0.11 -1.06 9.91 71.23 0.71 -0.35 16 16 O -0.32 -11.09 10.41 -76.96 -0.80 -11.89 16 17 C 0.13 5.10 4.61 46.75 0.22 5.31 16 18 C 0.15 8.13 6.77 86.48 0.59 8.71 16 19 N -0.63 -36.33 3.70 -717.37 -2.65 -38.98 16 20 C -0.24 -14.66 10.70 84.04 0.90 -13.77 16 21 H 0.08 4.84 7.83 -2.91 -0.02 4.82 16 22 C -0.07 -4.32 5.50 84.86 0.47 -3.85 16 23 N -0.95 -62.19 11.38 21.65 0.25 -61.94 16 24 Si 0.99 48.80 29.55 68.60 2.03 50.83 16 25 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 26 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 27 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 28 C 0.11 5.18 8.27 86.48 0.72 5.90 16 29 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.06 0.80 5.19 -2.39 -0.01 0.79 16 31 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.10 1.39 8.03 -2.39 -0.02 1.37 16 33 H 0.10 1.13 5.70 -2.38 -0.01 1.12 16 34 H 0.14 1.52 6.56 -2.39 -0.02 1.51 16 35 H 0.08 1.87 7.16 -2.39 -0.02 1.85 16 36 H 0.12 2.86 8.06 -2.91 -0.02 2.84 16 37 H 0.16 1.63 8.06 -2.91 -0.02 1.60 16 38 H 0.16 1.24 8.06 -2.91 -0.02 1.21 16 39 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.07 0.64 7.78 -2.39 -0.02 0.62 16 41 H 0.08 0.55 8.08 -2.39 -0.02 0.53 16 42 H 0.14 4.52 8.01 -2.39 -0.02 4.50 16 43 H 0.02 1.12 5.65 -2.39 -0.01 1.11 16 44 H 0.04 2.28 7.16 -2.39 -0.02 2.27 16 45 H 0.25 15.63 8.31 -92.71 -0.77 14.85 16 46 H 0.06 2.45 8.14 -2.38 -0.02 2.43 16 47 H 0.03 1.40 6.36 -2.39 -0.02 1.38 16 Total: -1.00 -90.08 370.18 3.92 -86.16 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: 0.98 Total: 11.19 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: 6.12 Total: 12.27 kcal Atomic # 7 Polarization: -116.23 SS G_CDS: -4.60 Total: -120.83 kcal Atomic # 8 Polarization: -39.01 SS G_CDS: -0.62 Total: -39.62 kcal Atomic # 14 Polarization: 48.80 SS G_CDS: 2.03 Total: 50.83 kcal Total: -90.08 3.92 -86.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957281116.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.671 kcal (2) G-P(sol) polarization free energy of solvation -90.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds