Wall clock time and date at job start Tue Mar 31 2020 16:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47251 * 2 1 4 4 C 1.34773 * 120.00238 * 275.33745 * 3 2 1 5 5 O 1.21284 * 119.99996 * 4.77835 * 4 3 2 6 6 C 1.50696 * 120.00299 * 184.78432 * 4 3 2 7 7 H 1.09001 * 110.67084 * 54.64601 * 6 4 3 8 8 O 1.43771 * 110.75139 * 178.06283 * 6 4 3 9 9 C 1.36138 * 109.23899 * 90.58198 * 8 6 4 10 10 C 1.39281 * 129.88275 * 198.40539 * 9 8 6 11 11 C 1.37933 * 120.24091 * 180.99839 * 10 9 8 12 12 C 1.38281 * 120.34906 * 359.97329 * 11 10 9 13 13 C 1.38353 * 119.76903 * 359.87536 * 12 11 10 14 14 C 1.37740 * 119.97943 * 359.95590 * 13 12 11 15 15 C 1.51641 * 132.17835 * 180.40029 * 14 13 12 16 16 H 1.08997 * 110.97512 * 46.42264 * 15 14 13 17 17 C 1.53005 * 110.93562 * 282.74989 * 15 14 13 18 18 C 1.46505 * 119.99939 * 95.33041 * 3 2 1 19 19 C 1.53496 * 114.20405 * 60.00188 * 18 3 2 20 20 N 1.47059 * 87.98708 * 220.34603 * 19 18 3 21 21 C 1.36934 * 136.05848 * 207.08897 * 20 19 18 22 22 H 1.08002 * 120.00330 * 7.00039 * 21 20 19 23 23 C 1.38814 * 120.00062 * 187.00285 * 21 20 19 24 24 N 1.31618 * 119.99751 * 354.89551 * 23 21 20 25 25 Si 1.86805 * 120.00019 * 174.89567 * 23 21 20 26 26 H 1.48501 * 109.47074 * 275.01331 * 25 23 21 27 27 H 1.48500 * 109.46852 * 35.01640 * 25 23 21 28 28 H 1.48500 * 109.46905 * 155.01306 * 25 23 21 29 29 C 1.47073 * 87.88631 * 27.34214 * 20 19 18 30 30 H 1.08994 * 109.47382 * 299.99874 * 1 2 3 31 31 H 1.09003 * 109.47382 * 59.99865 * 1 2 3 32 32 H 1.08999 * 109.47280 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47012 * 240.00304 * 2 1 3 34 34 H 1.08994 * 109.46794 * 120.00237 * 2 1 3 35 35 H 1.08001 * 119.87843 * 0.96313 * 10 9 8 36 36 H 1.08003 * 119.82180 * 179.97438 * 11 10 9 37 37 H 1.08000 * 120.11629 * 179.86145 * 12 11 10 38 38 H 1.08007 * 120.00858 * 179.97438 * 13 12 11 39 39 H 1.09000 * 109.46817 * 307.45623 * 17 15 14 40 40 H 1.08993 * 109.47202 * 67.46248 * 17 15 14 41 41 H 1.09004 * 109.46708 * 187.46456 * 17 15 14 42 42 H 1.08998 * 113.41383 * 193.20235 * 18 3 2 43 43 H 1.08996 * 113.46607 * 105.56174 * 19 18 3 44 44 H 1.09005 * 113.51960 * 335.13988 * 19 18 3 45 45 H 0.97012 * 119.99505 * 179.97438 * 24 23 21 46 46 H 1.08999 * 113.46313 * 87.44092 * 29 20 19 47 47 H 1.08993 * 113.46737 * 217.87890 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1406 2.0527 -1.1621 5 8 1.7655 1.5456 -2.1979 6 6 2.7437 3.4337 -1.1745 7 1 3.7271 3.4284 -0.7045 8 8 2.8191 3.9446 -2.5162 9 6 1.6764 4.6277 -2.8010 10 6 1.1394 4.9961 -4.0322 11 6 -0.0372 5.7135 -4.0903 12 6 -0.6944 6.0730 -2.9279 13 6 -0.1692 5.7083 -1.7010 14 6 1.0038 4.9889 -1.6408 15 6 1.8072 4.4470 -0.4744 16 1 1.1602 3.9462 0.2458 17 6 2.6120 5.5603 0.1992 18 6 2.3737 2.0325 1.2633 19 6 3.4930 1.3275 2.0418 20 7 2.7377 1.6008 3.2736 21 6 3.0406 1.7780 4.5972 22 1 4.0721 1.8359 4.9120 23 6 2.0220 1.8831 5.5343 24 7 0.7664 1.9135 5.1409 25 14 2.4333 1.9815 7.3539 26 1 2.6000 0.6100 7.8985 27 1 3.6951 2.7431 7.5356 28 1 1.3318 2.6695 8.0738 29 6 1.5129 1.5936 2.4594 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8932 -0.5139 0.8899 35 1 1.6465 4.7194 -4.9448 36 1 -0.4473 5.9959 -5.0486 37 1 -1.6143 6.6367 -2.9777 38 1 -0.6791 5.9874 -0.7907 39 1 3.2006 6.0881 -0.5511 40 1 1.9304 6.2591 0.6839 41 1 3.2786 5.1266 0.9448 42 1 2.5027 3.1111 1.1732 43 1 4.4493 1.8484 1.9943 44 1 3.5801 0.2654 1.8124 45 1 0.0545 1.9865 5.7959 46 1 1.0771 0.6017 2.3398 47 1 0.7823 2.3412 2.7678 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957464043.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:48 Heat of formation + Delta-G solvation = 31.381967 kcal Electronic energy + Delta-G solvation = -29601.192194 eV Core-core repulsion = 25751.981247 eV Total energy + Delta-G solvation = -3849.210947 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.73269 -39.69709 -38.03416 -37.20122 -34.71165 -34.08666 -32.16726 -30.98293 -30.28274 -29.55891 -27.77474 -27.11164 -24.79819 -23.83502 -23.59867 -22.88849 -22.07800 -21.01227 -20.16282 -18.84410 -17.76876 -17.09776 -16.88026 -16.62029 -15.98327 -15.49180 -15.25092 -14.90953 -14.61904 -14.19133 -14.03612 -13.80901 -13.71426 -13.36920 -13.12646 -12.88926 -12.83945 -12.64775 -12.37509 -12.22356 -12.07416 -11.78831 -11.73471 -11.55795 -11.48804 -11.29261 -11.10126 -10.97207 -10.86827 -10.72729 -10.66191 -10.37581 -10.19380 -9.60039 -9.54557 -8.94296 -8.91754 -8.26395 -8.14005 -7.04142 -5.93051 -3.25811 1.24889 1.34870 2.60953 2.91617 3.31356 3.35067 3.38408 3.39702 3.70974 4.23245 4.28794 4.38411 4.52453 4.81423 4.97217 5.05767 5.07159 5.14828 5.18878 5.27130 5.33213 5.35508 5.42413 5.45138 5.52855 5.54774 5.61551 5.66991 5.74384 5.83907 5.89402 5.98153 6.10812 6.13540 6.18145 6.27266 6.29447 6.37201 6.39481 6.43308 6.51726 6.54036 6.76171 7.01430 7.01757 7.13135 7.35633 7.64857 7.80923 8.29240 8.88328 9.54982 10.45260 11.24767 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.015609 B = 0.003623 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.419333 B = 7726.521681 C = 8405.438660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.115 3.885 3 N -0.586 5.586 4 C 0.500 3.500 5 O -0.531 6.531 6 C 0.067 3.933 7 H 0.141 0.859 8 O -0.275 6.275 9 C 0.115 3.885 10 C -0.136 4.136 11 C -0.088 4.088 12 C -0.152 4.152 13 C -0.066 4.066 14 C -0.164 4.164 15 C -0.075 4.075 16 H 0.109 0.891 17 C -0.140 4.140 18 C 0.059 3.941 19 C 0.105 3.895 20 N -0.602 5.602 21 C -0.223 4.223 22 H 0.084 0.916 23 C -0.002 4.002 24 N -0.916 5.916 25 Si 0.912 3.088 26 H -0.287 1.287 27 H -0.280 1.280 28 H -0.289 1.289 29 C 0.154 3.846 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.126 0.874 36 H 0.129 0.871 37 H 0.126 0.874 38 H 0.125 0.875 39 H 0.061 0.939 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.118 0.882 43 H 0.045 0.955 44 H 0.038 0.962 45 H 0.256 0.744 46 H 0.039 0.961 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.366 6.273 -14.191 15.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.007 4.007 3 N -0.319 5.319 4 C 0.286 3.714 5 O -0.408 6.408 6 C 0.008 3.992 7 H 0.158 0.842 8 O -0.188 6.188 9 C 0.070 3.930 10 C -0.155 4.155 11 C -0.106 4.106 12 C -0.170 4.170 13 C -0.084 4.084 14 C -0.165 4.165 15 C -0.093 4.093 16 H 0.127 0.873 17 C -0.197 4.197 18 C -0.045 4.045 19 C -0.022 4.022 20 N -0.328 5.328 21 C -0.350 4.350 22 H 0.102 0.898 23 C -0.199 4.199 24 N -0.561 5.561 25 Si 0.742 3.258 26 H -0.214 1.214 27 H -0.205 1.205 28 H -0.216 1.216 29 C 0.028 3.972 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.103 0.897 35 H 0.144 0.856 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.143 0.857 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.136 0.864 43 H 0.063 0.937 44 H 0.055 0.945 45 H 0.066 0.934 46 H 0.057 0.943 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.427 6.011 -14.500 15.703 hybrid contribution 0.081 -0.236 1.277 1.301 sum -0.346 5.775 -13.224 14.434 Atomic orbital electron populations 1.22165 0.95777 1.01994 1.02704 1.21394 0.94709 0.81899 1.02744 1.48025 1.63794 1.14020 1.06096 1.20729 0.79299 0.87441 0.83929 1.90690 1.48898 1.69053 1.32113 1.23421 1.02144 0.91688 0.81979 0.84169 1.86898 1.33693 1.66625 1.31549 1.19570 0.86451 0.92502 0.94461 1.20234 0.97072 1.03234 0.94970 1.20836 0.94050 0.97029 0.98669 1.21000 1.00982 1.02979 0.92038 1.20321 0.93614 0.96164 0.98325 1.20714 0.98014 1.03758 0.94033 1.21475 0.95839 0.95780 0.96232 0.87267 1.21787 1.00074 0.97434 1.00389 1.24225 1.00751 0.97746 0.81793 1.22837 0.94992 0.97377 0.87037 1.45290 1.03061 1.82100 1.02347 1.18877 0.92750 1.43807 0.79557 0.89819 1.24842 0.95158 1.01801 0.98124 1.69827 0.98168 1.55180 1.32947 0.86142 0.77325 0.77732 0.84593 1.21410 1.20512 1.21551 1.22489 0.91490 0.99199 0.84069 0.91540 0.92537 0.91991 0.90782 0.89664 0.85584 0.85356 0.85598 0.85671 0.92027 0.91161 0.90875 0.86422 0.93714 0.94488 0.93402 0.94333 0.90994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.48 9.96 37.16 0.37 -2.11 16 2 C 0.11 1.75 5.10 -4.04 -0.02 1.72 16 3 N -0.59 -9.32 2.72 -165.74 -0.45 -9.77 16 4 C 0.50 8.32 6.93 -10.99 -0.08 8.25 16 5 O -0.53 -10.43 16.13 -13.51 -0.22 -10.64 16 6 C 0.07 0.97 2.69 -26.98 -0.07 0.90 16 7 H 0.14 1.72 7.80 -51.93 -0.41 1.32 16 8 O -0.28 -4.34 10.42 -39.24 -0.41 -4.75 16 9 C 0.12 1.72 6.85 -38.95 -0.27 1.45 16 10 C -0.14 -1.76 10.06 -39.31 -0.40 -2.15 16 11 C -0.09 -0.94 10.02 -39.68 -0.40 -1.34 16 12 C -0.15 -1.63 10.07 -39.52 -0.40 -2.02 16 13 C -0.07 -0.80 10.03 -39.72 -0.40 -1.20 16 14 C -0.16 -2.28 5.62 -104.10 -0.58 -2.86 16 15 C -0.07 -0.99 2.07 -90.40 -0.19 -1.18 16 16 H 0.11 1.56 6.38 -51.93 -0.33 1.23 16 17 C -0.14 -1.59 9.09 37.16 0.34 -1.25 16 18 C 0.06 0.99 3.65 -67.67 -0.25 0.75 16 19 C 0.11 1.95 8.22 -8.51 -0.07 1.88 16 20 N -0.60 -14.11 3.78 -184.62 -0.70 -14.81 16 21 C -0.22 -5.82 10.74 -15.06 -0.16 -5.99 16 22 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 23 C 0.00 -0.05 5.50 -17.43 -0.10 -0.14 16 24 N -0.92 -25.53 11.63 55.49 0.65 -24.89 16 25 Si 0.91 20.97 29.56 -169.99 -5.02 15.95 16 26 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 27 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 28 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 29 C 0.15 3.26 6.21 -8.36 -0.05 3.21 16 30 H 0.07 1.05 6.74 -51.93 -0.35 0.70 16 31 H 0.06 0.89 8.07 -51.93 -0.42 0.47 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 1.11 7.66 -51.93 -0.40 0.71 16 34 H 0.09 1.30 5.96 -51.93 -0.31 0.99 16 35 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 36 H 0.13 1.00 8.06 -52.48 -0.42 0.57 16 37 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 38 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.07 0.81 7.57 -51.93 -0.39 0.42 16 42 H 0.12 1.84 4.12 -51.93 -0.21 1.63 16 43 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.04 0.68 7.05 -51.93 -0.37 0.32 16 45 H 0.26 6.97 8.31 -40.81 -0.34 6.63 16 46 H 0.04 0.84 5.43 -51.93 -0.28 0.55 16 47 H 0.07 1.70 7.32 -51.93 -0.38 1.32 16 LS Contribution 373.42 15.07 5.63 5.63 Total: -1.00 -31.41 373.42 -10.02 -41.43 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -6.78 Total: 3.96 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -2.72 Total: -2.10 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: -0.50 Total: -49.47 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -0.63 Total: -15.40 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.41 -10.02 -41.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957464043.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.813 kcal (2) G-P(sol) polarization free energy of solvation -31.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds