Wall clock time and date at job start Tue Mar 31 2020 16:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47251 * 2 1 4 4 C 1.34773 * 120.00238 * 275.33745 * 3 2 1 5 5 O 1.21284 * 119.99996 * 4.77835 * 4 3 2 6 6 C 1.50696 * 120.00299 * 184.78432 * 4 3 2 7 7 H 1.09001 * 110.67084 * 54.64601 * 6 4 3 8 8 O 1.43771 * 110.75139 * 178.06283 * 6 4 3 9 9 C 1.36138 * 109.23899 * 90.58198 * 8 6 4 10 10 C 1.39281 * 129.88275 * 198.40539 * 9 8 6 11 11 C 1.37933 * 120.24091 * 180.99839 * 10 9 8 12 12 C 1.38281 * 120.34906 * 359.97329 * 11 10 9 13 13 C 1.38353 * 119.76903 * 359.87536 * 12 11 10 14 14 C 1.37740 * 119.97943 * 359.95590 * 13 12 11 15 15 C 1.51641 * 132.17835 * 180.40029 * 14 13 12 16 16 H 1.08997 * 110.97512 * 46.42264 * 15 14 13 17 17 C 1.53005 * 110.93562 * 282.74989 * 15 14 13 18 18 C 1.46505 * 119.99939 * 95.33041 * 3 2 1 19 19 C 1.53496 * 114.20405 * 60.00188 * 18 3 2 20 20 N 1.47059 * 87.98708 * 220.34603 * 19 18 3 21 21 C 1.36934 * 136.05848 * 207.08897 * 20 19 18 22 22 H 1.08002 * 120.00330 * 7.00039 * 21 20 19 23 23 C 1.38814 * 120.00062 * 187.00285 * 21 20 19 24 24 N 1.31618 * 119.99751 * 354.89551 * 23 21 20 25 25 Si 1.86805 * 120.00019 * 174.89567 * 23 21 20 26 26 H 1.48501 * 109.47074 * 275.01331 * 25 23 21 27 27 H 1.48500 * 109.46852 * 35.01640 * 25 23 21 28 28 H 1.48500 * 109.46905 * 155.01306 * 25 23 21 29 29 C 1.47073 * 87.88631 * 27.34214 * 20 19 18 30 30 H 1.08994 * 109.47382 * 299.99874 * 1 2 3 31 31 H 1.09003 * 109.47382 * 59.99865 * 1 2 3 32 32 H 1.08999 * 109.47280 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47012 * 240.00304 * 2 1 3 34 34 H 1.08994 * 109.46794 * 120.00237 * 2 1 3 35 35 H 1.08001 * 119.87843 * 0.96313 * 10 9 8 36 36 H 1.08003 * 119.82180 * 179.97438 * 11 10 9 37 37 H 1.08000 * 120.11629 * 179.86145 * 12 11 10 38 38 H 1.08007 * 120.00858 * 179.97438 * 13 12 11 39 39 H 1.09000 * 109.46817 * 307.45623 * 17 15 14 40 40 H 1.08993 * 109.47202 * 67.46248 * 17 15 14 41 41 H 1.09004 * 109.46708 * 187.46456 * 17 15 14 42 42 H 1.08998 * 113.41383 * 193.20235 * 18 3 2 43 43 H 1.08996 * 113.46607 * 105.56174 * 19 18 3 44 44 H 1.09005 * 113.51960 * 335.13988 * 19 18 3 45 45 H 0.97012 * 119.99505 * 179.97438 * 24 23 21 46 46 H 1.08999 * 113.46313 * 87.44092 * 29 20 19 47 47 H 1.08993 * 113.46737 * 217.87890 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1406 2.0527 -1.1621 5 8 1.7655 1.5456 -2.1979 6 6 2.7437 3.4337 -1.1745 7 1 3.7271 3.4284 -0.7045 8 8 2.8191 3.9446 -2.5162 9 6 1.6764 4.6277 -2.8010 10 6 1.1394 4.9961 -4.0322 11 6 -0.0372 5.7135 -4.0903 12 6 -0.6944 6.0730 -2.9279 13 6 -0.1692 5.7083 -1.7010 14 6 1.0038 4.9889 -1.6408 15 6 1.8072 4.4470 -0.4744 16 1 1.1602 3.9462 0.2458 17 6 2.6120 5.5603 0.1992 18 6 2.3737 2.0325 1.2633 19 6 3.4930 1.3275 2.0418 20 7 2.7377 1.6008 3.2736 21 6 3.0406 1.7780 4.5972 22 1 4.0721 1.8359 4.9120 23 6 2.0220 1.8831 5.5343 24 7 0.7664 1.9135 5.1409 25 14 2.4333 1.9815 7.3539 26 1 2.6000 0.6100 7.8985 27 1 3.6951 2.7431 7.5356 28 1 1.3318 2.6695 8.0738 29 6 1.5129 1.5936 2.4594 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8932 -0.5139 0.8899 35 1 1.6465 4.7194 -4.9448 36 1 -0.4473 5.9959 -5.0486 37 1 -1.6143 6.6367 -2.9777 38 1 -0.6791 5.9874 -0.7907 39 1 3.2006 6.0881 -0.5511 40 1 1.9304 6.2591 0.6839 41 1 3.2786 5.1266 0.9448 42 1 2.5027 3.1111 1.1732 43 1 4.4493 1.8484 1.9943 44 1 3.5801 0.2654 1.8124 45 1 0.0545 1.9865 5.7959 46 1 1.0771 0.6017 2.3398 47 1 0.7823 2.3412 2.7678 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957464043.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:47 Heat of formation + Delta-G solvation = 14.730849 kcal Electronic energy + Delta-G solvation = -29601.914241 eV Core-core repulsion = 25751.981247 eV Total energy + Delta-G solvation = -3849.932994 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.84055 -41.04700 -39.47307 -38.24757 -36.17680 -35.14547 -34.04266 -32.24267 -31.21039 -30.57562 -29.51312 -28.27882 -26.42315 -25.30694 -24.91133 -24.01042 -23.10797 -22.08640 -21.67235 -20.16209 -19.14702 -18.52601 -18.12674 -17.90841 -17.08128 -16.84567 -16.61598 -16.42197 -15.92280 -15.71116 -15.24678 -14.93778 -14.80698 -14.63424 -14.40866 -14.12122 -14.01951 -13.83170 -13.63227 -13.53052 -13.33130 -13.17496 -13.04200 -12.91490 -12.77722 -12.62945 -12.53200 -12.39656 -12.14331 -12.06994 -11.98625 -11.96086 -11.63094 -11.36995 -10.91090 -10.80090 -9.85917 -9.68412 -9.14870 -8.92678 -7.92647 -5.25430 0.31995 0.39888 1.30760 1.49636 1.50629 1.58613 1.68774 2.24843 2.49289 2.76844 3.10179 3.24010 3.29387 3.40026 3.53819 3.70606 3.87375 3.98681 4.05057 4.13916 4.19341 4.22078 4.29657 4.32662 4.35964 4.47602 4.48443 4.53381 4.62511 4.77314 4.79142 4.82591 4.86156 4.92100 4.94368 5.07531 5.20393 5.21903 5.24804 5.31525 5.37842 5.45554 5.46545 5.54094 5.54370 5.62410 5.88601 6.15287 6.28814 6.89576 6.96177 7.58985 8.56413 9.25155 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.015609 B = 0.003623 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.419333 B = 7726.521681 C = 8405.438660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.112 3.888 3 N -0.582 5.582 4 C 0.501 3.499 5 O -0.562 6.562 6 C 0.067 3.933 7 H 0.162 0.838 8 O -0.291 6.291 9 C 0.081 3.919 10 C -0.150 4.150 11 C -0.085 4.085 12 C -0.146 4.146 13 C -0.079 4.079 14 C -0.180 4.180 15 C -0.070 4.070 16 H 0.095 0.905 17 C -0.134 4.134 18 C 0.093 3.907 19 C 0.107 3.893 20 N -0.630 5.630 21 C -0.228 4.228 22 H 0.090 0.910 23 C -0.057 4.057 24 N -0.947 5.947 25 Si 0.974 3.026 26 H -0.289 1.289 27 H -0.266 1.266 28 H -0.296 1.296 29 C 0.155 3.845 30 H 0.051 0.949 31 H 0.044 0.956 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.134 0.866 36 H 0.162 0.838 37 H 0.157 0.843 38 H 0.138 0.862 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.134 0.866 43 H 0.066 0.934 44 H 0.046 0.954 45 H 0.249 0.751 46 H 0.032 0.968 47 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.076 7.249 -14.871 16.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.010 4.010 3 N -0.315 5.315 4 C 0.289 3.711 5 O -0.441 6.441 6 C 0.007 3.993 7 H 0.180 0.820 8 O -0.204 6.204 9 C 0.036 3.964 10 C -0.169 4.169 11 C -0.102 4.102 12 C -0.164 4.164 13 C -0.097 4.097 14 C -0.181 4.181 15 C -0.088 4.088 16 H 0.113 0.887 17 C -0.191 4.191 18 C -0.012 4.012 19 C -0.019 4.019 20 N -0.356 5.356 21 C -0.356 4.356 22 H 0.108 0.892 23 C -0.251 4.251 24 N -0.595 5.595 25 Si 0.802 3.198 26 H -0.216 1.216 27 H -0.191 1.191 28 H -0.223 1.223 29 C 0.029 3.971 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.152 0.848 36 H 0.180 0.820 37 H 0.175 0.825 38 H 0.156 0.844 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.151 0.849 43 H 0.084 0.916 44 H 0.063 0.937 45 H 0.058 0.942 46 H 0.050 0.950 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 0.044 6.986 -15.202 16.731 hybrid contribution -0.107 -0.547 1.373 1.482 sum -0.063 6.439 -13.829 15.255 Atomic orbital electron populations 1.22075 0.95467 1.02981 1.01240 1.21472 0.94952 0.81625 1.02951 1.47988 1.63575 1.14248 1.05668 1.21163 0.78564 0.88130 0.83287 1.90668 1.50317 1.70004 1.33093 1.23548 1.03168 0.90329 0.82232 0.82048 1.86860 1.34491 1.67044 1.32013 1.19930 0.86934 0.93884 0.95631 1.20594 0.97968 1.03578 0.94755 1.21261 0.92986 0.95670 1.00304 1.21428 1.01636 1.02019 0.91350 1.20646 0.93271 0.96069 0.99731 1.20889 0.98817 1.04586 0.93797 1.21423 0.95629 0.95918 0.95864 0.88702 1.21762 1.00024 0.96903 1.00416 1.23791 0.98153 0.98346 0.80893 1.22957 0.95924 0.98165 0.84874 1.45537 1.04890 1.82416 1.02761 1.19252 0.93036 1.42295 0.81007 0.89224 1.25584 0.95150 1.02547 1.01851 1.69997 0.98854 1.57053 1.33599 0.85165 0.77201 0.77409 0.79987 1.21578 1.19104 1.22300 1.22396 0.90925 0.98046 0.85773 0.93040 0.93713 0.89886 0.90274 0.89582 0.84820 0.82049 0.82544 0.84422 0.91497 0.90594 0.90451 0.84886 0.91622 0.93684 0.94186 0.95041 0.94091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.71 9.96 71.98 0.72 -3.99 16 2 C 0.11 3.36 5.10 86.38 0.44 3.80 16 3 N -0.58 -18.22 2.72 -796.66 -2.17 -20.39 16 4 C 0.50 16.49 6.93 87.66 0.61 17.10 16 5 O -0.56 -22.11 16.13 15.18 0.24 -21.86 16 6 C 0.07 1.88 2.69 30.43 0.08 1.96 16 7 H 0.16 3.71 7.80 -2.39 -0.02 3.69 16 8 O -0.29 -9.12 10.42 -76.90 -0.80 -9.92 16 9 C 0.08 2.37 6.85 22.68 0.16 2.53 16 10 C -0.15 -3.71 10.06 22.45 0.23 -3.49 16 11 C -0.08 -1.61 10.02 22.21 0.22 -1.39 16 12 C -0.15 -2.76 10.07 22.31 0.22 -2.54 16 13 C -0.08 -1.82 10.03 22.18 0.22 -1.59 16 14 C -0.18 -4.89 5.62 -19.53 -0.11 -5.00 16 15 C -0.07 -1.81 2.07 -10.65 -0.02 -1.84 16 16 H 0.09 2.71 6.38 -2.39 -0.02 2.70 16 17 C -0.13 -2.89 9.09 71.98 0.65 -2.23 16 18 C 0.09 3.05 3.65 45.55 0.17 3.22 16 19 C 0.11 3.83 8.22 83.18 0.68 4.51 16 20 N -0.63 -29.31 3.78 -738.01 -2.79 -32.10 16 21 C -0.23 -11.82 10.74 84.03 0.90 -10.92 16 22 H 0.09 4.41 7.83 -2.91 -0.02 4.39 16 23 C -0.06 -3.06 5.50 84.86 0.47 -2.60 16 24 N -0.95 -53.89 11.63 21.65 0.25 -53.64 16 25 Si 0.97 43.18 29.56 68.60 2.03 45.21 16 26 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 27 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 28 H -0.30 -13.35 7.11 99.48 0.71 -12.64 16 29 C 0.16 6.64 6.21 83.27 0.52 7.16 16 30 H 0.05 1.66 6.74 -2.39 -0.02 1.65 16 31 H 0.04 1.41 8.07 -2.39 -0.02 1.39 16 32 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.08 2.32 7.66 -2.39 -0.02 2.30 16 34 H 0.09 2.58 5.96 -2.39 -0.01 2.56 16 35 H 0.13 2.94 8.06 -2.91 -0.02 2.92 16 36 H 0.16 1.93 8.06 -2.91 -0.02 1.90 16 37 H 0.16 1.95 8.06 -2.91 -0.02 1.92 16 38 H 0.14 2.70 8.06 -2.91 -0.02 2.67 16 39 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.08 1.58 7.57 -2.38 -0.02 1.57 16 42 H 0.13 4.02 4.12 -2.39 -0.01 4.01 16 43 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.05 1.58 7.05 -2.38 -0.02 1.56 16 45 H 0.25 13.91 8.31 -92.70 -0.77 13.14 16 46 H 0.03 1.40 5.43 -2.39 -0.01 1.38 16 47 H 0.04 2.00 7.32 -2.39 -0.02 1.98 16 Total: -1.00 -68.25 373.42 3.90 -64.35 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: 0.98 Total: 23.67 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: 6.16 Total: 4.69 kcal Atomic # 7 Polarization: -101.43 SS G_CDS: -4.70 Total: -106.13 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -0.56 Total: -31.79 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -68.25 3.90 -64.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957464043.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.083 kcal (2) G-P(sol) polarization free energy of solvation -68.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds