Wall clock time and date at job start Tue Mar 31 2020 16:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 N 1.46501 * 109.47160 * 2 1 4 4 C 1.34771 * 119.99770 * 275.19444 * 3 2 1 5 5 O 1.21283 * 120.00629 * 355.25457 * 4 3 2 6 6 C 1.50705 * 119.99828 * 175.26130 * 4 3 2 7 7 H 1.08999 * 110.66499 * 311.84453 * 6 4 3 8 8 O 1.43777 * 110.74958 * 188.63317 * 6 4 3 9 9 C 1.36133 * 109.23317 * 269.43209 * 8 6 4 10 10 C 1.39284 * 129.88862 * 160.99883 * 9 8 6 11 11 C 1.37935 * 120.24105 * 179.51346 * 10 9 8 12 12 C 1.38286 * 120.34921 * 0.05038 * 11 10 9 13 13 C 1.38350 * 119.76914 * 0.17362 * 12 11 10 14 14 C 1.37744 * 119.97541 * 359.97438 * 13 12 11 15 15 C 1.51646 * 132.17058 * 179.01012 * 14 13 12 16 16 H 1.08999 * 110.94067 * 314.06764 * 15 14 13 17 17 C 1.53003 * 110.93466 * 77.75160 * 15 14 13 18 18 C 1.46500 * 119.99653 * 95.19074 * 3 2 1 19 19 C 1.53487 * 114.20894 * 299.99872 * 18 3 2 20 20 N 1.47066 * 87.98497 * 87.52494 * 19 18 3 21 21 C 1.36944 * 136.05502 * 207.08741 * 20 19 18 22 22 H 1.08001 * 120.00134 * 359.97438 * 21 20 19 23 23 C 1.38816 * 119.99714 * 179.97438 * 21 20 19 24 24 N 1.31614 * 119.99877 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99776 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47128 * 90.00070 * 25 23 21 27 27 H 1.48497 * 109.46944 * 210.00081 * 25 23 21 28 28 H 1.48503 * 109.46819 * 329.99796 * 25 23 21 29 29 C 1.47064 * 87.88841 * 27.34015 * 20 19 18 30 30 H 1.08995 * 109.46772 * 174.96371 * 1 2 3 31 31 H 1.08992 * 109.46855 * 294.97025 * 1 2 3 32 32 H 1.09004 * 109.46576 * 54.96865 * 1 2 3 33 33 H 1.09000 * 109.46876 * 239.99886 * 2 1 3 34 34 H 1.08997 * 109.46695 * 119.99947 * 2 1 3 35 35 H 1.07998 * 119.87789 * 359.49723 * 10 9 8 36 36 H 1.07994 * 119.82311 * 180.02562 * 11 10 9 37 37 H 1.07995 * 120.11883 * 180.15283 * 12 11 10 38 38 H 1.07994 * 120.01530 * 180.02562 * 13 12 11 39 39 H 1.09008 * 109.47006 * 172.54165 * 17 15 14 40 40 H 1.08994 * 109.47495 * 292.54193 * 17 15 14 41 41 H 1.09001 * 109.47287 * 52.54147 * 17 15 14 42 42 H 1.09003 * 113.40744 * 166.79640 * 18 3 2 43 43 H 1.09002 * 113.47184 * 332.74120 * 19 18 3 44 44 H 1.09005 * 113.52117 * 202.30626 * 19 18 3 45 45 H 0.97010 * 119.99692 * 180.02562 * 24 23 21 46 46 H 1.08998 * 113.46913 * 87.43687 * 29 20 19 47 47 H 1.08996 * 113.46804 * 217.88416 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.1434 2.0517 -1.1624 5 8 1.9344 1.4858 -2.2145 6 6 2.5431 3.5048 -1.1549 7 1 1.9447 4.0646 -0.4361 8 8 2.4226 4.0730 -2.4701 9 6 3.6040 3.9287 -3.1309 10 6 3.8771 3.9868 -4.4955 11 6 5.1674 3.8195 -4.9534 12 6 6.2008 3.5917 -4.0632 13 6 5.9372 3.5279 -2.7065 14 6 4.6490 3.6917 -2.2473 15 6 4.0529 3.6568 -0.8533 16 1 4.4257 2.8003 -0.2916 17 6 4.3330 4.9622 -0.1061 18 6 2.3708 2.0335 1.2636 19 6 1.2117 2.1341 2.2646 20 7 1.5889 0.8004 2.7562 21 6 0.9444 -0.2470 3.3586 22 1 -0.1120 -0.1799 3.5729 23 6 1.6490 -1.3951 3.6938 24 7 2.9365 -1.4768 3.4331 25 14 0.7698 -2.8242 4.5149 26 1 0.2478 -3.7473 3.4755 27 1 1.7215 -3.5531 5.3914 28 1 -0.3587 -2.3082 5.3307 29 6 2.9640 1.0890 2.3220 30 1 -0.3633 -1.0237 -0.0902 31 1 -0.3633 0.4338 0.9316 32 1 -0.3632 0.5899 -0.8415 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.0756 4.1632 -5.1975 36 1 5.3716 3.8662 -6.0129 37 1 7.2100 3.4637 -4.4256 38 1 6.7413 3.3507 -2.0077 39 1 3.7857 4.9659 0.8366 40 1 5.4013 5.0444 0.0938 41 1 4.0116 5.8063 -0.7162 42 1 2.9291 2.9603 1.1315 43 1 0.2302 2.1607 1.7911 44 1 1.3437 2.9230 3.0052 45 1 3.4288 -2.2793 3.6670 46 1 3.5589 1.6025 3.0772 47 1 3.4754 0.2252 1.8973 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957464044.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:52 Heat of formation + Delta-G solvation = 35.162360 kcal Electronic energy + Delta-G solvation = -29803.093981 eV Core-core repulsion = 25954.046964 eV Total energy + Delta-G solvation = -3849.047017 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.68738 -39.66975 -37.99304 -37.12710 -34.38180 -33.85056 -32.23282 -30.73592 -30.28543 -29.50339 -27.75151 -27.03774 -24.95517 -23.71741 -23.53032 -22.61075 -21.85688 -21.00905 -20.43105 -18.64867 -17.51922 -17.09319 -16.80901 -16.47495 -15.86127 -15.41310 -15.08060 -14.88347 -14.52782 -14.11860 -13.92944 -13.79386 -13.66915 -13.16300 -13.07030 -12.90043 -12.77469 -12.67064 -12.64246 -12.24710 -12.04662 -11.61999 -11.56826 -11.53567 -11.37666 -11.15832 -11.07953 -10.92634 -10.73678 -10.67405 -10.26468 -10.06524 -10.00343 -9.49894 -9.45918 -8.93774 -8.91178 -8.15191 -8.05105 -7.01372 -5.88729 -3.21380 1.24815 1.35192 2.69332 3.08821 3.33088 3.38872 3.40373 3.47934 3.72390 4.22706 4.34887 4.36200 4.56269 4.80842 4.96115 5.03034 5.04487 5.09839 5.22187 5.27001 5.32683 5.34273 5.41328 5.51569 5.56367 5.74484 5.79642 5.91646 5.93030 5.96455 6.04225 6.12005 6.20883 6.27070 6.30735 6.38248 6.40853 6.42746 6.53226 6.54976 6.72806 6.95982 6.99380 7.04377 7.13311 7.16123 7.39474 7.83259 7.94249 8.47005 8.91938 9.58427 10.48338 11.27970 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.021124 B = 0.003411 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.160837 B = 8206.468298 C = 8391.096177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.111 3.889 3 N -0.564 5.564 4 C 0.497 3.503 5 O -0.532 6.532 6 C 0.067 3.933 7 H 0.138 0.862 8 O -0.277 6.277 9 C 0.119 3.881 10 C -0.136 4.136 11 C -0.087 4.087 12 C -0.153 4.153 13 C -0.066 4.066 14 C -0.166 4.166 15 C -0.071 4.071 16 H 0.106 0.894 17 C -0.139 4.139 18 C 0.063 3.937 19 C 0.102 3.898 20 N -0.601 5.601 21 C -0.214 4.214 22 H 0.081 0.919 23 C -0.004 4.004 24 N -0.919 5.919 25 Si 0.909 3.091 26 H -0.287 1.287 27 H -0.291 1.291 28 H -0.282 1.282 29 C 0.146 3.854 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.037 0.963 33 H 0.058 0.942 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.129 0.871 37 H 0.126 0.874 38 H 0.124 0.876 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.061 0.939 42 H 0.092 0.908 43 H 0.047 0.953 44 H 0.043 0.957 45 H 0.255 0.745 46 H 0.039 0.961 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.300 13.083 -10.139 17.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.010 4.010 3 N -0.296 5.296 4 C 0.283 3.717 5 O -0.409 6.409 6 C 0.008 3.992 7 H 0.156 0.844 8 O -0.189 6.189 9 C 0.074 3.926 10 C -0.155 4.155 11 C -0.105 4.105 12 C -0.171 4.171 13 C -0.085 4.085 14 C -0.167 4.167 15 C -0.090 4.090 16 H 0.124 0.876 17 C -0.196 4.196 18 C -0.043 4.043 19 C -0.026 4.026 20 N -0.327 5.327 21 C -0.341 4.341 22 H 0.098 0.902 23 C -0.201 4.201 24 N -0.566 5.566 25 Si 0.739 3.261 26 H -0.214 1.214 27 H -0.217 1.217 28 H -0.207 1.207 29 C 0.020 3.980 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.056 0.944 33 H 0.077 0.923 34 H 0.143 0.857 35 H 0.144 0.856 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.142 0.858 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.109 0.891 43 H 0.065 0.935 44 H 0.061 0.939 45 H 0.065 0.935 46 H 0.057 0.943 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.921 12.515 -10.603 17.125 hybrid contribution -0.431 -0.869 0.863 1.298 sum 4.490 11.646 -9.741 15.832 Atomic orbital electron populations 1.21992 0.96348 1.01231 1.01353 1.21619 0.94331 0.80868 1.04184 1.47513 1.63013 1.14491 1.04589 1.20638 0.78478 0.88359 0.84275 1.90693 1.50567 1.69018 1.30601 1.23471 0.98019 0.93408 0.84342 0.84426 1.86896 1.32337 1.73118 1.26584 1.19551 0.84693 0.95382 0.92981 1.20246 0.97675 1.06045 0.91538 1.20837 0.91652 0.98263 0.99740 1.20987 0.99310 1.03994 0.92824 1.20284 0.94664 0.97842 0.95668 1.20693 0.94521 1.07080 0.94424 1.21376 0.91869 1.01381 0.94374 0.87609 1.21780 1.02787 0.95137 0.99871 1.23052 0.99577 0.96887 0.84756 1.22907 0.96567 0.89853 0.93231 1.45618 1.05172 1.10761 1.71182 1.18842 0.92349 0.90727 1.32231 0.90153 1.24735 0.95761 0.98135 1.01425 1.69789 1.06461 1.28235 1.52073 0.86170 0.78360 0.82485 0.79064 1.21426 1.21674 1.20738 1.22505 0.89455 0.95478 0.90599 0.92571 0.91401 0.94389 0.92313 0.85728 0.85579 0.85359 0.85629 0.85791 0.91155 0.91313 0.91958 0.89061 0.93516 0.93947 0.93499 0.94340 0.90182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 10.08 37.16 0.37 -2.50 16 2 C 0.11 2.24 5.32 -4.04 -0.02 2.22 16 3 N -0.56 -10.13 2.73 -165.73 -0.45 -10.58 16 4 C 0.50 8.93 6.87 -10.99 -0.08 8.85 16 5 O -0.53 -11.48 16.03 -13.34 -0.21 -11.69 16 6 C 0.07 0.97 2.63 -26.98 -0.07 0.90 16 7 H 0.14 1.64 7.48 -51.93 -0.39 1.25 16 8 O -0.28 -4.42 10.46 -39.06 -0.41 -4.83 16 9 C 0.12 1.78 6.75 -38.95 -0.26 1.52 16 10 C -0.14 -1.78 10.06 -39.30 -0.40 -2.18 16 11 C -0.09 -0.94 10.02 -39.67 -0.40 -1.34 16 12 C -0.15 -1.62 10.07 -39.52 -0.40 -2.01 16 13 C -0.07 -0.78 10.03 -39.72 -0.40 -1.18 16 14 C -0.17 -2.25 5.62 -104.10 -0.58 -2.83 16 15 C -0.07 -0.88 2.15 -90.40 -0.19 -1.07 16 16 H 0.11 1.37 7.07 -51.93 -0.37 1.00 16 17 C -0.14 -1.30 9.16 37.16 0.34 -0.96 16 18 C 0.06 1.03 3.94 -67.68 -0.27 0.77 16 19 C 0.10 1.82 7.79 -8.51 -0.07 1.76 16 20 N -0.60 -13.41 2.29 -184.62 -0.42 -13.83 16 21 C -0.21 -5.39 9.92 -15.05 -0.15 -5.54 16 22 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 23 C 0.00 -0.09 5.50 -17.43 -0.10 -0.19 16 24 N -0.92 -24.99 11.50 55.49 0.64 -24.35 16 25 Si 0.91 20.98 29.55 -169.99 -5.02 15.96 16 26 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 27 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 28 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 29 C 0.15 2.99 6.43 -8.37 -0.05 2.93 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.07 1.34 5.97 -51.93 -0.31 1.03 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 1.22 7.52 -51.93 -0.39 0.83 16 34 H 0.12 2.89 5.07 -51.93 -0.26 2.62 16 35 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 36 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 37 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 38 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 39 H 0.07 0.57 7.53 -51.92 -0.39 0.17 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.09 1.19 4.56 -51.93 -0.24 0.95 16 43 H 0.05 0.84 6.91 -51.93 -0.36 0.48 16 44 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 46 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.08 1.87 6.33 -51.93 -0.33 1.54 16 LS Contribution 371.90 15.07 5.60 5.60 Total: -1.00 -30.69 371.90 -9.80 -40.49 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -6.81 Total: 4.09 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: -2.72 Total: -0.85 kcal Atomic # 7 Polarization: -48.53 SS G_CDS: -0.24 Total: -48.77 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: -0.62 Total: -16.52 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.69 -9.80 -40.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957464044.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.651 kcal (2) G-P(sol) polarization free energy of solvation -30.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds