Wall clock time and date at job start Tue Mar 31 2020 16:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 N 1.46501 * 109.47160 * 2 1 4 4 C 1.34771 * 119.99770 * 275.19444 * 3 2 1 5 5 O 1.21283 * 120.00629 * 355.25457 * 4 3 2 6 6 C 1.50705 * 119.99828 * 175.26130 * 4 3 2 7 7 H 1.08999 * 110.66499 * 311.84453 * 6 4 3 8 8 O 1.43777 * 110.74958 * 188.63317 * 6 4 3 9 9 C 1.36133 * 109.23317 * 269.43209 * 8 6 4 10 10 C 1.39284 * 129.88862 * 160.99883 * 9 8 6 11 11 C 1.37935 * 120.24105 * 179.51346 * 10 9 8 12 12 C 1.38286 * 120.34921 * 0.05038 * 11 10 9 13 13 C 1.38350 * 119.76914 * 0.17362 * 12 11 10 14 14 C 1.37744 * 119.97541 * 359.97438 * 13 12 11 15 15 C 1.51646 * 132.17058 * 179.01012 * 14 13 12 16 16 H 1.08999 * 110.94067 * 314.06764 * 15 14 13 17 17 C 1.53003 * 110.93466 * 77.75160 * 15 14 13 18 18 C 1.46500 * 119.99653 * 95.19074 * 3 2 1 19 19 C 1.53487 * 114.20894 * 299.99872 * 18 3 2 20 20 N 1.47066 * 87.98497 * 87.52494 * 19 18 3 21 21 C 1.36944 * 136.05502 * 207.08741 * 20 19 18 22 22 H 1.08001 * 120.00134 * 359.97438 * 21 20 19 23 23 C 1.38816 * 119.99714 * 179.97438 * 21 20 19 24 24 N 1.31614 * 119.99877 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99776 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47128 * 90.00070 * 25 23 21 27 27 H 1.48497 * 109.46944 * 210.00081 * 25 23 21 28 28 H 1.48503 * 109.46819 * 329.99796 * 25 23 21 29 29 C 1.47064 * 87.88841 * 27.34015 * 20 19 18 30 30 H 1.08995 * 109.46772 * 174.96371 * 1 2 3 31 31 H 1.08992 * 109.46855 * 294.97025 * 1 2 3 32 32 H 1.09004 * 109.46576 * 54.96865 * 1 2 3 33 33 H 1.09000 * 109.46876 * 239.99886 * 2 1 3 34 34 H 1.08997 * 109.46695 * 119.99947 * 2 1 3 35 35 H 1.07998 * 119.87789 * 359.49723 * 10 9 8 36 36 H 1.07994 * 119.82311 * 180.02562 * 11 10 9 37 37 H 1.07995 * 120.11883 * 180.15283 * 12 11 10 38 38 H 1.07994 * 120.01530 * 180.02562 * 13 12 11 39 39 H 1.09008 * 109.47006 * 172.54165 * 17 15 14 40 40 H 1.08994 * 109.47495 * 292.54193 * 17 15 14 41 41 H 1.09001 * 109.47287 * 52.54147 * 17 15 14 42 42 H 1.09003 * 113.40744 * 166.79640 * 18 3 2 43 43 H 1.09002 * 113.47184 * 332.74120 * 19 18 3 44 44 H 1.09005 * 113.52117 * 202.30626 * 19 18 3 45 45 H 0.97010 * 119.99692 * 180.02562 * 24 23 21 46 46 H 1.08998 * 113.46913 * 87.43687 * 29 20 19 47 47 H 1.08996 * 113.46804 * 217.88416 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.1434 2.0517 -1.1624 5 8 1.9344 1.4858 -2.2145 6 6 2.5431 3.5048 -1.1549 7 1 1.9447 4.0646 -0.4361 8 8 2.4226 4.0730 -2.4701 9 6 3.6040 3.9287 -3.1309 10 6 3.8771 3.9868 -4.4955 11 6 5.1674 3.8195 -4.9534 12 6 6.2008 3.5917 -4.0632 13 6 5.9372 3.5279 -2.7065 14 6 4.6490 3.6917 -2.2473 15 6 4.0529 3.6568 -0.8533 16 1 4.4257 2.8003 -0.2916 17 6 4.3330 4.9622 -0.1061 18 6 2.3708 2.0335 1.2636 19 6 1.2117 2.1341 2.2646 20 7 1.5889 0.8004 2.7562 21 6 0.9444 -0.2470 3.3586 22 1 -0.1120 -0.1799 3.5729 23 6 1.6490 -1.3951 3.6938 24 7 2.9365 -1.4768 3.4331 25 14 0.7698 -2.8242 4.5149 26 1 0.2478 -3.7473 3.4755 27 1 1.7215 -3.5531 5.3914 28 1 -0.3587 -2.3082 5.3307 29 6 2.9640 1.0890 2.3220 30 1 -0.3633 -1.0237 -0.0902 31 1 -0.3633 0.4338 0.9316 32 1 -0.3632 0.5899 -0.8415 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.0756 4.1632 -5.1975 36 1 5.3716 3.8662 -6.0129 37 1 7.2100 3.4637 -4.4256 38 1 6.7413 3.3507 -2.0077 39 1 3.7857 4.9659 0.8366 40 1 5.4013 5.0444 0.0938 41 1 4.0116 5.8063 -0.7162 42 1 2.9291 2.9603 1.1315 43 1 0.2302 2.1607 1.7911 44 1 1.3437 2.9230 3.0052 45 1 3.4288 -2.2793 3.6670 46 1 3.5589 1.6025 3.0772 47 1 3.4754 0.2252 1.8973 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957464044.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:51 Heat of formation + Delta-G solvation = 19.485619 kcal Electronic energy + Delta-G solvation = -29803.773775 eV Core-core repulsion = 25954.046964 eV Total energy + Delta-G solvation = -3849.726812 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.78252 -41.07843 -39.40486 -38.19902 -35.78611 -35.02554 -34.08020 -32.17151 -31.18365 -30.55309 -29.40646 -28.20899 -26.48616 -25.27969 -24.76617 -23.78119 -23.01987 -22.07802 -21.87680 -20.01942 -18.99064 -18.39332 -18.08668 -17.71105 -16.89509 -16.87142 -16.66068 -16.34842 -15.80319 -15.64941 -15.21461 -14.88569 -14.71237 -14.50728 -14.36622 -14.35456 -14.03232 -13.92777 -13.69326 -13.42164 -13.31973 -13.01134 -12.94981 -12.83328 -12.75381 -12.60991 -12.39782 -12.35250 -12.08387 -11.98084 -11.75520 -11.69402 -11.60170 -11.21282 -10.93109 -10.72542 -9.83388 -9.60768 -9.11802 -8.83020 -7.84688 -5.14608 0.34523 0.41911 1.35143 1.47974 1.49951 1.56039 1.79742 2.31028 2.50582 2.80365 3.19805 3.28479 3.38419 3.44782 3.48718 3.73742 3.91455 4.05748 4.21293 4.23609 4.24766 4.30211 4.36052 4.41075 4.50962 4.52100 4.58389 4.62831 4.64701 4.84815 4.90212 4.94820 4.96934 5.01362 5.10917 5.13507 5.30319 5.33067 5.35313 5.38827 5.39747 5.47331 5.51984 5.55758 5.62867 5.66209 5.97348 6.18630 6.48586 6.97784 7.03658 7.67402 8.64824 9.31701 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.021124 B = 0.003411 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.160837 B = 8206.468298 C = 8391.096177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.119 3.881 3 N -0.566 5.566 4 C 0.495 3.505 5 O -0.574 6.574 6 C 0.070 3.930 7 H 0.168 0.832 8 O -0.295 6.295 9 C 0.080 3.920 10 C -0.155 4.155 11 C -0.088 4.088 12 C -0.149 4.149 13 C -0.077 4.077 14 C -0.180 4.180 15 C -0.066 4.066 16 H 0.099 0.901 17 C -0.133 4.133 18 C 0.089 3.911 19 C 0.105 3.895 20 N -0.626 5.626 21 C -0.205 4.205 22 H 0.080 0.920 23 C -0.055 4.055 24 N -0.946 5.946 25 Si 0.960 3.040 26 H -0.292 1.292 27 H -0.300 1.300 28 H -0.273 1.273 29 C 0.144 3.856 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.039 0.961 33 H 0.044 0.956 34 H 0.095 0.905 35 H 0.129 0.871 36 H 0.159 0.841 37 H 0.157 0.843 38 H 0.145 0.855 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.060 0.940 42 H 0.137 0.863 43 H 0.048 0.952 44 H 0.074 0.926 45 H 0.245 0.755 46 H 0.046 0.954 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.044 15.383 -10.255 19.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.004 4.004 3 N -0.297 5.297 4 C 0.283 3.717 5 O -0.454 6.454 6 C 0.010 3.990 7 H 0.185 0.815 8 O -0.208 6.208 9 C 0.036 3.964 10 C -0.174 4.174 11 C -0.105 4.105 12 C -0.167 4.167 13 C -0.095 4.095 14 C -0.181 4.181 15 C -0.084 4.084 16 H 0.117 0.883 17 C -0.190 4.190 18 C -0.016 4.016 19 C -0.021 4.021 20 N -0.353 5.353 21 C -0.333 4.333 22 H 0.097 0.903 23 C -0.249 4.249 24 N -0.595 5.595 25 Si 0.790 3.210 26 H -0.219 1.219 27 H -0.227 1.227 28 H -0.198 1.198 29 C 0.017 3.983 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.113 0.887 35 H 0.147 0.853 36 H 0.176 0.824 37 H 0.175 0.825 38 H 0.162 0.838 39 H 0.108 0.892 40 H 0.100 0.900 41 H 0.080 0.920 42 H 0.154 0.846 43 H 0.066 0.934 44 H 0.091 0.909 45 H 0.054 0.946 46 H 0.064 0.936 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 5.651 14.864 -10.714 19.175 hybrid contribution -0.630 -1.558 0.780 1.853 sum 5.022 13.306 -9.934 17.348 Atomic orbital electron populations 1.21854 0.95400 1.01404 1.00934 1.21313 0.94964 0.82202 1.01910 1.47549 1.62862 1.13724 1.05525 1.21394 0.77175 0.89888 0.83230 1.90665 1.52313 1.70358 1.32033 1.23626 0.99988 0.90567 0.84811 0.81536 1.86861 1.33384 1.73310 1.27269 1.19930 0.84841 0.97643 0.94013 1.20585 0.99018 1.06481 0.91271 1.21240 0.90756 0.97044 1.01483 1.21438 1.00711 1.02118 0.92392 1.20663 0.94594 0.97459 0.96801 1.20965 0.95004 1.07367 0.94772 1.21415 0.89964 1.02798 0.94267 0.88254 1.21797 1.04029 0.93065 1.00128 1.22960 0.98616 0.96969 0.83075 1.23096 0.97022 0.88294 0.93714 1.45813 1.06357 1.12146 1.70958 1.19044 0.92460 0.91542 1.30303 0.90252 1.25295 0.96349 1.00176 1.03071 1.69942 1.07493 1.28178 1.53902 0.85354 0.77429 0.80219 0.78008 1.21923 1.22683 1.19812 1.22488 0.88745 0.95145 0.91872 0.92327 0.92014 0.94164 0.93801 0.88660 0.85290 0.82382 0.82542 0.83770 0.89189 0.89980 0.92042 0.84565 0.93380 0.90879 0.94565 0.93634 0.93757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.27 10.08 71.99 0.73 -4.54 16 2 C 0.12 4.88 5.32 86.38 0.46 5.34 16 3 N -0.57 -20.00 2.73 -796.65 -2.17 -22.17 16 4 C 0.49 17.54 6.87 87.66 0.60 18.14 16 5 O -0.57 -25.19 16.03 15.03 0.24 -24.95 16 6 C 0.07 1.88 2.63 30.43 0.08 1.96 16 7 H 0.17 3.40 7.48 -2.39 -0.02 3.39 16 8 O -0.30 -9.24 10.46 -77.00 -0.81 -10.04 16 9 C 0.08 2.36 6.75 22.68 0.15 2.51 16 10 C -0.15 -3.95 10.06 22.45 0.23 -3.73 16 11 C -0.09 -1.71 10.02 22.21 0.22 -1.49 16 12 C -0.15 -2.73 10.07 22.31 0.22 -2.51 16 13 C -0.08 -1.64 10.03 22.18 0.22 -1.41 16 14 C -0.18 -4.60 5.62 -19.53 -0.11 -4.71 16 15 C -0.07 -1.47 2.15 -10.65 -0.02 -1.50 16 16 H 0.10 2.35 7.07 -2.39 -0.02 2.33 16 17 C -0.13 -2.01 9.16 71.98 0.66 -1.35 16 18 C 0.09 2.72 3.94 45.55 0.18 2.90 16 19 C 0.10 3.48 7.79 83.18 0.65 4.13 16 20 N -0.63 -27.50 2.29 -738.00 -1.69 -29.19 16 21 C -0.21 -10.30 9.92 84.03 0.83 -9.46 16 22 H 0.08 3.91 7.83 -2.91 -0.02 3.89 16 23 C -0.06 -2.91 5.50 84.86 0.47 -2.45 16 24 N -0.95 -52.81 11.50 21.65 0.25 -52.56 16 25 Si 0.96 43.78 29.55 68.60 2.03 45.81 16 26 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 27 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 28 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 29 C 0.14 5.79 6.43 83.27 0.54 6.33 16 30 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.06 2.42 5.97 -2.39 -0.01 2.40 16 32 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.04 1.90 7.52 -2.39 -0.02 1.88 16 34 H 0.10 4.57 5.07 -2.39 -0.01 4.56 16 35 H 0.13 3.02 8.06 -2.91 -0.02 3.00 16 36 H 0.16 2.03 8.06 -2.91 -0.02 2.00 16 37 H 0.16 1.85 8.06 -2.91 -0.02 1.83 16 38 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 39 H 0.09 1.01 7.53 -2.38 -0.02 0.99 16 40 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.14 3.01 4.56 -2.39 -0.01 3.00 16 43 H 0.05 1.61 6.91 -2.39 -0.02 1.59 16 44 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 45 H 0.25 13.66 8.31 -92.70 -0.77 12.89 16 46 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 47 H 0.04 2.12 6.33 -2.39 -0.02 2.11 16 Total: -1.00 -69.45 371.90 4.93 -64.51 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: 0.98 Total: 20.45 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: 6.11 Total: 8.15 kcal Atomic # 7 Polarization: -100.31 SS G_CDS: -3.61 Total: -103.93 kcal Atomic # 8 Polarization: -34.43 SS G_CDS: -0.56 Total: -34.99 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -69.45 4.93 -64.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957464044.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.998 kcal (2) G-P(sol) polarization free energy of solvation -69.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds