Wall clock time and date at job start Tue Mar 31 2020 17:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.47439 * 2 1 4 4 C 1.34769 * 119.99889 * 270.00495 * 3 2 1 5 5 O 1.21290 * 119.99863 * 179.97438 * 4 3 2 6 6 C 1.50698 * 120.00578 * 359.97438 * 4 3 2 7 7 H 1.08999 * 110.66522 * 55.69880 * 6 4 3 8 8 C 1.54709 * 110.74641 * 292.48663 * 6 4 3 9 9 C 1.51640 * 101.92640 * 266.95554 * 8 6 4 10 10 C 1.37740 * 132.17169 * 164.59371 * 9 8 6 11 11 C 1.38348 * 119.98071 * 180.36512 * 10 9 8 12 12 C 1.38289 * 119.76375 * 359.97438 * 11 10 9 13 13 C 1.37928 * 120.35318 * 359.81290 * 12 11 10 14 14 C 1.38881 * 107.04359 * 344.61329 * 9 8 6 15 15 O 1.36581 * 111.29073 * 358.90993 * 14 9 8 16 16 C 1.46497 * 119.99706 * 89.99712 * 3 2 1 17 17 H 1.09004 * 110.88752 * 3.88596 * 16 3 2 18 18 C 1.55159 * 111.00683 * 240.00285 * 16 3 2 19 19 C 1.54320 * 102.94349 * 206.39051 * 18 16 3 20 20 N 1.47018 * 107.27210 * 22.19183 * 19 18 16 21 21 C 1.36945 * 125.64695 * 181.02594 * 20 19 18 22 22 H 1.08000 * 119.99441 * 180.02562 * 21 20 19 23 23 C 1.38811 * 120.00031 * 0.02562 * 21 20 19 24 24 N 1.31619 * 120.00283 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99811 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.46722 * 90.00437 * 25 23 21 27 27 H 1.48497 * 109.47157 * 210.00127 * 25 23 21 28 28 H 1.48494 * 109.47346 * 330.00290 * 25 23 21 29 29 C 1.47421 * 108.70379 * 1.28563 * 20 19 18 30 30 H 1.08998 * 109.46782 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47083 * 299.99708 * 1 2 3 32 32 H 1.08997 * 109.47421 * 59.99920 * 1 2 3 33 33 H 1.09000 * 109.47052 * 239.99770 * 2 1 3 34 34 H 1.09005 * 109.47167 * 120.00193 * 2 1 3 35 35 H 1.09001 * 110.93720 * 25.11337 * 8 6 4 36 36 H 1.09004 * 110.93885 * 148.76114 * 8 6 4 37 37 H 1.08005 * 120.01223 * 0.38190 * 10 9 8 38 38 H 1.07998 * 120.12158 * 180.02562 * 11 10 9 39 39 H 1.08003 * 119.82278 * 179.83476 * 12 11 10 40 40 H 1.07996 * 119.88311 * 180.02562 * 13 12 11 41 41 H 1.08996 * 110.71852 * 88.02553 * 18 16 3 42 42 H 1.08998 * 110.86977 * 324.82422 * 18 16 3 43 43 H 1.09010 * 109.88205 * 262.77471 * 19 18 16 44 44 H 1.09004 * 110.01290 * 141.68524 * 19 18 16 45 45 H 0.96998 * 120.00243 * 179.97438 * 24 23 21 46 46 H 1.08996 * 110.36244 * 94.48455 * 29 20 19 47 47 H 1.08997 * 110.36930 * 216.80538 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2430 2.0165 -1.1671 5 8 2.6469 3.1602 -1.1671 6 6 1.9923 1.3061 -2.4723 7 1 0.9681 0.9360 -2.5182 8 6 3.0019 0.1507 -2.6701 9 6 4.1021 0.8284 -3.4636 10 6 5.4029 0.4665 -3.7363 11 6 6.2061 1.2963 -4.4981 12 6 5.6979 2.4873 -4.9835 13 6 4.3943 2.8496 -4.7153 14 6 3.5784 2.0188 -3.9510 15 8 2.2714 2.1720 -3.5855 16 6 2.2625 2.0717 1.2687 17 1 2.0990 1.4023 2.1133 18 6 1.3817 3.3434 1.3883 19 6 2.2019 4.2443 2.3355 20 7 3.5991 3.7922 2.2667 21 6 4.6448 4.3207 2.9757 22 1 5.6389 3.9165 2.8537 23 6 4.4270 5.3757 3.8510 24 7 3.2155 5.8679 4.0000 25 14 5.8533 6.0961 4.8186 26 1 6.4745 7.1968 4.0390 27 1 5.3555 6.6263 6.1133 28 1 6.8637 5.0380 5.0727 29 6 3.6892 2.6799 1.3033 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 3.3770 -0.2073 -1.7113 36 1 2.5550 -0.6639 -3.2400 37 1 5.7956 -0.4649 -3.3558 38 1 7.2262 1.0146 -4.7136 39 1 6.3249 3.1370 -5.5760 40 1 4.0051 3.7812 -5.0985 41 1 0.4138 3.1021 1.8276 42 1 1.2544 3.8204 0.4166 43 1 1.8301 4.1454 3.3555 44 1 2.1323 5.2838 2.0149 45 1 3.0632 6.6050 4.6120 46 1 3.9690 3.0531 0.3182 47 1 4.4094 1.9375 1.6473 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033894198.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:59 Heat of formation + Delta-G solvation = 9.664130 kcal Electronic energy + Delta-G solvation = -29458.403838 eV Core-core repulsion = 25608.251134 eV Total energy + Delta-G solvation = -3850.152703 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.64545 -39.65742 -37.53747 -36.49355 -35.70786 -32.96484 -32.23705 -30.36949 -30.14114 -29.81076 -28.85084 -26.99138 -24.93648 -24.25987 -23.14241 -22.40795 -21.86751 -21.02773 -19.98695 -19.12050 -17.53925 -17.11723 -16.91222 -16.67136 -15.89817 -15.49292 -15.39226 -14.56348 -14.52966 -14.25797 -13.99973 -13.84408 -13.70552 -13.41606 -13.31621 -13.12390 -12.82200 -12.79891 -12.27748 -12.15839 -12.00331 -11.87928 -11.71861 -11.67235 -11.53214 -11.26091 -10.89443 -10.85450 -10.77974 -10.62746 -10.23017 -10.03459 -9.86429 -9.59216 -9.16119 -8.98105 -8.55083 -8.34798 -8.19018 -6.67954 -5.60949 -2.93308 1.18351 1.29488 2.62716 2.85289 3.27544 3.46385 3.50913 3.52709 3.65261 4.14869 4.21347 4.36111 4.59637 4.69666 4.75188 4.91641 4.97576 5.02276 5.10032 5.19174 5.24488 5.31674 5.44844 5.49266 5.49874 5.53219 5.56539 5.61044 5.66316 5.84345 5.89783 5.92436 6.02173 6.20960 6.22827 6.29052 6.37677 6.46503 6.52606 6.62888 6.70039 6.76802 7.05701 7.25074 7.54700 7.66292 7.76205 7.92739 8.33169 8.38088 9.32377 9.92885 10.59957 11.50864 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.012127 B = 0.003897 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.273673 B = 7184.179814 C = 8638.229255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.092 3.908 3 N -0.599 5.599 4 C 0.493 3.507 5 O -0.491 6.491 6 C 0.063 3.937 7 H 0.136 0.864 8 C -0.101 4.101 9 C -0.175 4.175 10 C -0.069 4.069 11 C -0.150 4.150 12 C -0.085 4.085 13 C -0.131 4.131 14 C 0.114 3.886 15 O -0.275 6.275 16 C 0.132 3.868 17 H 0.093 0.907 18 C -0.152 4.152 19 C 0.185 3.815 20 N -0.602 5.602 21 C -0.222 4.222 22 H 0.076 0.924 23 C -0.010 4.010 24 N -0.923 5.923 25 Si 0.911 3.089 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.282 1.282 29 C 0.124 3.876 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.124 0.876 38 H 0.127 0.873 39 H 0.131 0.869 40 H 0.129 0.871 41 H 0.054 0.946 42 H 0.071 0.929 43 H 0.044 0.956 44 H 0.042 0.958 45 H 0.251 0.749 46 H 0.048 0.952 47 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.229 -17.232 -16.356 23.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.031 4.031 3 N -0.334 5.334 4 C 0.278 3.722 5 O -0.364 6.364 6 C 0.003 3.997 7 H 0.154 0.846 8 C -0.138 4.138 9 C -0.175 4.175 10 C -0.087 4.087 11 C -0.168 4.168 12 C -0.103 4.103 13 C -0.150 4.150 14 C 0.069 3.931 15 O -0.188 6.188 16 C 0.029 3.971 17 H 0.111 0.889 18 C -0.191 4.191 19 C 0.060 3.940 20 N -0.328 5.328 21 C -0.351 4.351 22 H 0.094 0.906 23 C -0.206 4.206 24 N -0.571 5.571 25 Si 0.742 3.258 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.208 1.208 29 C -0.003 4.003 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.142 0.858 38 H 0.145 0.855 39 H 0.148 0.852 40 H 0.147 0.853 41 H 0.073 0.927 42 H 0.089 0.911 43 H 0.062 0.938 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.066 0.934 47 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -3.150 -16.280 -16.280 23.238 hybrid contribution 0.577 0.306 0.757 0.999 sum -2.574 -15.974 -15.523 22.423 Atomic orbital electron populations 1.22245 0.95777 1.02142 1.02970 1.21828 0.94747 0.82943 1.03608 1.47948 1.65807 1.13746 1.05939 1.20661 0.79085 0.87460 0.85003 1.90805 1.42377 1.16857 1.86394 1.23385 1.01945 0.88745 0.85639 0.84632 1.21870 0.93310 0.97247 1.01408 1.20658 0.96126 0.96314 1.04442 1.20260 0.91490 0.99661 0.97283 1.21019 1.00030 0.95446 1.00281 1.20885 0.94078 0.96548 0.98780 1.20296 0.92918 0.99464 1.02285 1.19644 0.84132 0.93486 0.95855 1.87050 1.23203 1.63600 1.44929 1.22496 0.98225 0.93561 0.82843 0.88931 1.23212 0.97769 0.96399 1.01751 1.21049 0.82485 0.95054 0.95426 1.44314 1.05052 1.36327 1.47128 1.19047 0.87749 1.11998 1.16293 0.90614 1.24779 0.96780 0.98823 1.00185 1.69971 1.18843 1.28129 1.40154 0.86124 0.81306 0.79080 0.79301 1.21668 1.21726 1.20772 1.21957 0.92511 0.90640 0.95160 0.91480 0.91672 0.92589 0.90193 0.89803 0.88127 0.88052 0.85795 0.85492 0.85152 0.85349 0.92699 0.91065 0.93762 0.93999 0.93880 0.93399 0.95173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 10.20 37.16 0.38 -1.00 16 2 C 0.09 0.84 5.56 -4.04 -0.02 0.81 16 3 N -0.60 -8.57 2.55 -163.54 -0.42 -8.99 16 4 C 0.49 7.99 6.25 -10.99 -0.07 7.92 16 5 O -0.49 -10.66 12.52 -13.51 -0.17 -10.83 16 6 C 0.06 0.77 3.20 -26.99 -0.09 0.69 16 7 H 0.14 1.22 7.04 -51.93 -0.37 0.85 16 8 C -0.10 -0.99 5.33 -26.52 -0.14 -1.13 16 9 C -0.17 -2.17 6.26 -104.10 -0.65 -2.83 16 10 C -0.07 -0.75 10.03 -39.72 -0.40 -1.15 16 11 C -0.15 -1.56 10.07 -39.52 -0.40 -1.96 16 12 C -0.08 -0.94 10.02 -39.68 -0.40 -1.34 16 13 C -0.13 -1.74 10.06 -39.31 -0.40 -2.13 16 14 C 0.11 1.66 6.87 -38.95 -0.27 1.39 16 15 O -0.28 -4.18 10.45 -40.68 -0.43 -4.61 16 16 C 0.13 2.41 3.57 -65.66 -0.23 2.18 16 17 H 0.09 1.56 7.86 -51.93 -0.41 1.15 16 18 C -0.15 -3.14 6.32 -24.90 -0.16 -3.30 16 19 C 0.18 4.84 5.38 -3.07 -0.02 4.83 16 20 N -0.60 -16.54 3.39 -169.94 -0.58 -17.12 16 21 C -0.22 -6.57 10.28 -15.06 -0.15 -6.73 16 22 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 23 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 24 N -0.92 -28.33 10.31 55.49 0.57 -27.76 16 25 Si 0.91 23.03 29.55 -169.99 -5.02 18.01 16 26 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 27 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 28 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 29 C 0.12 2.85 6.58 -2.41 -0.02 2.83 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.45 7.19 -51.93 -0.37 0.07 16 33 H 0.08 0.54 4.48 -51.93 -0.23 0.31 16 34 H 0.08 0.70 7.93 -51.93 -0.41 0.28 16 35 H 0.10 0.91 6.30 -51.93 -0.33 0.58 16 36 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 38 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 39 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 40 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 41 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 42 H 0.07 1.58 6.27 -51.93 -0.33 1.25 16 43 H 0.04 1.24 7.38 -51.92 -0.38 0.85 16 44 H 0.04 1.24 7.50 -51.93 -0.39 0.85 16 45 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 46 H 0.05 1.21 5.53 -51.93 -0.29 0.93 16 47 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 368.14 15.07 5.55 5.55 Total: -1.00 -36.73 368.14 -10.47 -47.20 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -6.86 Total: -0.15 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -3.12 Total: -1.30 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: -0.42 Total: -53.87 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: -0.59 Total: -15.44 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -5.02 Total: 18.01 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.73 -10.47 -47.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033894198.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.868 kcal (2) G-P(sol) polarization free energy of solvation -36.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds