Wall clock time and date at job start Tue Mar 31 2020 17:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.47439 * 2 1 4 4 C 1.34769 * 119.99889 * 270.00495 * 3 2 1 5 5 O 1.21290 * 119.99863 * 179.97438 * 4 3 2 6 6 C 1.50698 * 120.00578 * 359.97438 * 4 3 2 7 7 H 1.08999 * 110.66522 * 55.69880 * 6 4 3 8 8 C 1.54709 * 110.74641 * 292.48663 * 6 4 3 9 9 C 1.51640 * 101.92640 * 266.95554 * 8 6 4 10 10 C 1.37740 * 132.17169 * 164.59371 * 9 8 6 11 11 C 1.38348 * 119.98071 * 180.36512 * 10 9 8 12 12 C 1.38289 * 119.76375 * 359.97438 * 11 10 9 13 13 C 1.37928 * 120.35318 * 359.81290 * 12 11 10 14 14 C 1.38881 * 107.04359 * 344.61329 * 9 8 6 15 15 O 1.36581 * 111.29073 * 358.90993 * 14 9 8 16 16 C 1.46497 * 119.99706 * 89.99712 * 3 2 1 17 17 H 1.09004 * 110.88752 * 3.88596 * 16 3 2 18 18 C 1.55159 * 111.00683 * 240.00285 * 16 3 2 19 19 C 1.54320 * 102.94349 * 206.39051 * 18 16 3 20 20 N 1.47018 * 107.27210 * 22.19183 * 19 18 16 21 21 C 1.36945 * 125.64695 * 181.02594 * 20 19 18 22 22 H 1.08000 * 119.99441 * 180.02562 * 21 20 19 23 23 C 1.38811 * 120.00031 * 0.02562 * 21 20 19 24 24 N 1.31619 * 120.00283 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99811 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.46722 * 90.00437 * 25 23 21 27 27 H 1.48497 * 109.47157 * 210.00127 * 25 23 21 28 28 H 1.48494 * 109.47346 * 330.00290 * 25 23 21 29 29 C 1.47421 * 108.70379 * 1.28563 * 20 19 18 30 30 H 1.08998 * 109.46782 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47083 * 299.99708 * 1 2 3 32 32 H 1.08997 * 109.47421 * 59.99920 * 1 2 3 33 33 H 1.09000 * 109.47052 * 239.99770 * 2 1 3 34 34 H 1.09005 * 109.47167 * 120.00193 * 2 1 3 35 35 H 1.09001 * 110.93720 * 25.11337 * 8 6 4 36 36 H 1.09004 * 110.93885 * 148.76114 * 8 6 4 37 37 H 1.08005 * 120.01223 * 0.38190 * 10 9 8 38 38 H 1.07998 * 120.12158 * 180.02562 * 11 10 9 39 39 H 1.08003 * 119.82278 * 179.83476 * 12 11 10 40 40 H 1.07996 * 119.88311 * 180.02562 * 13 12 11 41 41 H 1.08996 * 110.71852 * 88.02553 * 18 16 3 42 42 H 1.08998 * 110.86977 * 324.82422 * 18 16 3 43 43 H 1.09010 * 109.88205 * 262.77471 * 19 18 16 44 44 H 1.09004 * 110.01290 * 141.68524 * 19 18 16 45 45 H 0.96998 * 120.00243 * 179.97438 * 24 23 21 46 46 H 1.08996 * 110.36244 * 94.48455 * 29 20 19 47 47 H 1.08997 * 110.36930 * 216.80538 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2430 2.0165 -1.1671 5 8 2.6469 3.1602 -1.1671 6 6 1.9923 1.3061 -2.4723 7 1 0.9681 0.9360 -2.5182 8 6 3.0019 0.1507 -2.6701 9 6 4.1021 0.8284 -3.4636 10 6 5.4029 0.4665 -3.7363 11 6 6.2061 1.2963 -4.4981 12 6 5.6979 2.4873 -4.9835 13 6 4.3943 2.8496 -4.7153 14 6 3.5784 2.0188 -3.9510 15 8 2.2714 2.1720 -3.5855 16 6 2.2625 2.0717 1.2687 17 1 2.0990 1.4023 2.1133 18 6 1.3817 3.3434 1.3883 19 6 2.2019 4.2443 2.3355 20 7 3.5991 3.7922 2.2667 21 6 4.6448 4.3207 2.9757 22 1 5.6389 3.9165 2.8537 23 6 4.4270 5.3757 3.8510 24 7 3.2155 5.8679 4.0000 25 14 5.8533 6.0961 4.8186 26 1 6.4745 7.1968 4.0390 27 1 5.3555 6.6263 6.1133 28 1 6.8637 5.0380 5.0727 29 6 3.6892 2.6799 1.3033 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 3.3770 -0.2073 -1.7113 36 1 2.5550 -0.6639 -3.2400 37 1 5.7956 -0.4649 -3.3558 38 1 7.2262 1.0146 -4.7136 39 1 6.3249 3.1370 -5.5760 40 1 4.0051 3.7812 -5.0985 41 1 0.4138 3.1021 1.8276 42 1 1.2544 3.8204 0.4166 43 1 1.8301 4.1454 3.3555 44 1 2.1323 5.2838 2.0149 45 1 3.0632 6.6050 4.6120 46 1 3.9690 3.0531 0.3182 47 1 4.4094 1.9375 1.6473 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033894198.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:58 Heat of formation + Delta-G solvation = -13.460542 kcal Electronic energy + Delta-G solvation = -29459.406599 eV Core-core repulsion = 25608.251134 eV Total energy + Delta-G solvation = -3851.155464 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.63671 -40.89935 -38.71845 -37.98671 -36.94777 -34.49893 -33.59626 -31.68510 -31.01774 -30.92752 -30.50168 -28.63958 -26.59808 -25.61687 -23.98960 -23.35208 -22.87759 -22.34039 -22.02132 -20.34520 -19.01102 -18.49699 -18.01318 -17.84414 -16.98872 -16.81624 -16.60474 -16.47767 -15.86009 -15.50497 -15.22262 -14.93951 -14.68335 -14.59334 -14.33723 -14.21556 -14.11841 -14.07016 -13.70406 -13.65562 -13.44789 -13.01951 -12.83226 -12.77871 -12.71867 -12.61331 -12.42612 -12.23435 -12.05279 -12.04166 -12.02169 -11.84342 -11.75852 -11.46966 -10.74722 -10.54230 -9.84652 -9.69828 -9.13430 -8.88278 -7.87211 -5.23556 0.31747 0.39023 1.41633 1.45642 1.47386 1.54045 1.75379 2.29048 2.48174 2.77987 3.24941 3.31349 3.33854 3.48072 3.68584 3.88846 3.90509 3.99790 4.06411 4.14098 4.20415 4.21499 4.29511 4.42707 4.49793 4.53986 4.60243 4.63896 4.66537 4.68983 4.74196 4.86796 4.93777 4.98135 5.01865 5.07753 5.17706 5.35251 5.38627 5.41582 5.44632 5.53019 5.60426 5.61896 5.66558 5.73143 6.15209 6.16057 6.41399 7.06135 7.16118 7.73430 8.39445 9.23423 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.012127 B = 0.003897 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.273673 B = 7184.179814 C = 8638.229255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.084 3.916 3 N -0.591 5.591 4 C 0.486 3.514 5 O -0.560 6.560 6 C 0.065 3.935 7 H 0.174 0.826 8 C -0.091 4.091 9 C -0.185 4.185 10 C -0.076 4.076 11 C -0.150 4.150 12 C -0.092 4.092 13 C -0.160 4.160 14 C 0.074 3.926 15 O -0.302 6.302 16 C 0.154 3.846 17 H 0.119 0.881 18 C -0.136 4.136 19 C 0.195 3.805 20 N -0.622 5.622 21 C -0.245 4.245 22 H 0.079 0.921 23 C -0.067 4.067 24 N -0.953 5.953 25 Si 0.983 3.017 26 H -0.290 1.290 27 H -0.288 1.288 28 H -0.264 1.264 29 C 0.122 3.878 30 H 0.098 0.902 31 H 0.047 0.953 32 H 0.055 0.945 33 H 0.112 0.888 34 H 0.100 0.900 35 H 0.113 0.887 36 H 0.144 0.856 37 H 0.154 0.846 38 H 0.157 0.843 39 H 0.153 0.847 40 H 0.121 0.879 41 H 0.085 0.915 42 H 0.052 0.948 43 H 0.021 0.979 44 H -0.009 1.009 45 H 0.247 0.753 46 H 0.023 0.977 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.734 -21.243 -16.704 27.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.037 4.037 3 N -0.325 5.325 4 C 0.273 3.727 5 O -0.438 6.438 6 C 0.005 3.995 7 H 0.190 0.810 8 C -0.127 4.127 9 C -0.186 4.186 10 C -0.094 4.094 11 C -0.168 4.168 12 C -0.110 4.110 13 C -0.179 4.179 14 C 0.029 3.971 15 O -0.216 6.216 16 C 0.049 3.951 17 H 0.137 0.863 18 C -0.176 4.176 19 C 0.070 3.930 20 N -0.349 5.349 21 C -0.374 4.374 22 H 0.097 0.903 23 C -0.260 4.260 24 N -0.602 5.602 25 Si 0.810 3.190 26 H -0.217 1.217 27 H -0.215 1.215 28 H -0.189 1.189 29 C -0.004 4.004 30 H 0.117 0.883 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.129 0.871 34 H 0.118 0.882 35 H 0.131 0.869 36 H 0.162 0.838 37 H 0.172 0.828 38 H 0.174 0.826 39 H 0.170 0.830 40 H 0.139 0.861 41 H 0.103 0.897 42 H 0.071 0.929 43 H 0.039 0.961 44 H 0.009 0.991 45 H 0.056 0.944 46 H 0.041 0.959 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -2.669 -20.375 -16.653 26.450 hybrid contribution 0.466 1.571 0.794 1.820 sum -2.203 -18.805 -15.859 24.698 Atomic orbital electron populations 1.22235 0.94570 1.03928 1.02151 1.22280 0.95690 0.79713 1.06019 1.47989 1.65060 1.15534 1.03869 1.21564 0.77529 0.86844 0.86722 1.90783 1.45474 1.20029 1.87474 1.23642 1.04670 0.88632 0.82531 0.80956 1.22003 0.91690 0.96842 1.02183 1.21086 0.97302 0.95846 1.04347 1.20705 0.90967 1.00802 0.96883 1.21474 1.01346 0.94766 0.99207 1.21224 0.93406 0.97466 0.98929 1.20581 0.94236 0.99740 1.03322 1.20039 0.84407 0.95145 0.97494 1.87007 1.23870 1.64930 1.45750 1.22105 0.93970 0.93175 0.85831 0.86328 1.22981 0.98630 0.96553 0.99390 1.20760 0.83276 0.93728 0.95255 1.44633 1.05039 1.37698 1.47533 1.19460 0.88673 1.12598 1.16681 0.90271 1.25713 0.99601 0.99223 1.01423 1.70209 1.20964 1.28352 1.40643 0.85019 0.78254 0.78281 0.77417 1.21724 1.21457 1.18879 1.22021 0.96017 0.89686 0.92713 0.88339 0.93374 0.92636 0.87054 0.88177 0.86905 0.83816 0.82810 0.82556 0.82951 0.86063 0.89682 0.92908 0.96069 0.99106 0.94350 0.95907 0.94249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.98 10.20 71.98 0.73 -1.25 16 2 C 0.08 1.15 5.56 86.38 0.48 1.63 16 3 N -0.59 -15.70 2.55 -789.70 -2.02 -17.72 16 4 C 0.49 15.49 6.25 87.66 0.55 16.04 16 5 O -0.56 -25.46 12.52 15.17 0.19 -25.27 16 6 C 0.06 1.46 3.20 30.43 0.10 1.56 16 7 H 0.17 2.48 7.04 -2.39 -0.02 2.46 16 8 C -0.09 -1.43 5.33 30.73 0.16 -1.27 16 9 C -0.19 -4.27 6.26 -19.53 -0.12 -4.40 16 10 C -0.08 -1.47 10.03 22.18 0.22 -1.25 16 11 C -0.15 -2.84 10.07 22.31 0.22 -2.62 16 12 C -0.09 -2.02 10.02 22.21 0.22 -1.80 16 13 C -0.16 -4.46 10.06 22.45 0.23 -4.24 16 14 C 0.07 2.17 6.87 22.68 0.16 2.33 16 15 O -0.30 -9.29 10.45 -82.05 -0.86 -10.15 16 16 C 0.15 5.48 3.57 46.46 0.17 5.64 16 17 H 0.12 3.66 7.86 -2.39 -0.02 3.64 16 18 C -0.14 -5.75 6.32 31.78 0.20 -5.55 16 19 C 0.20 10.78 5.38 86.73 0.47 11.24 16 20 N -0.62 -35.51 3.39 -691.56 -2.35 -37.86 16 21 C -0.25 -14.92 10.28 84.03 0.86 -14.05 16 22 H 0.08 4.61 7.83 -2.91 -0.02 4.59 16 23 C -0.07 -4.06 5.49 84.86 0.47 -3.59 16 24 N -0.95 -60.93 10.31 21.65 0.22 -60.71 16 25 Si 0.98 48.26 29.55 68.60 2.03 50.29 16 26 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 27 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 28 H -0.26 -12.11 7.11 99.48 0.71 -11.40 16 29 C 0.12 5.68 6.58 86.93 0.57 6.25 16 30 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.05 0.66 7.19 -2.39 -0.02 0.65 16 33 H 0.11 0.88 4.48 -2.39 -0.01 0.87 16 34 H 0.10 1.14 7.93 -2.38 -0.02 1.12 16 35 H 0.11 1.51 6.30 -2.39 -0.02 1.50 16 36 H 0.14 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 38 H 0.16 1.95 8.06 -2.91 -0.02 1.92 16 39 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 40 H 0.12 3.30 8.06 -2.91 -0.02 3.28 16 41 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 42 H 0.05 2.44 6.27 -2.39 -0.01 2.42 16 43 H 0.02 1.24 7.38 -2.38 -0.02 1.23 16 44 H -0.01 -0.60 7.50 -2.38 -0.02 -0.62 16 45 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 46 H 0.02 1.21 5.53 -2.39 -0.01 1.20 16 47 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -88.53 368.14 3.88 -84.65 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: 0.98 Total: 12.08 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: 5.69 Total: 4.68 kcal Atomic # 7 Polarization: -112.14 SS G_CDS: -4.14 Total: -116.28 kcal Atomic # 8 Polarization: -34.75 SS G_CDS: -0.67 Total: -35.42 kcal Atomic # 14 Polarization: 48.26 SS G_CDS: 2.03 Total: 50.29 kcal Total: -88.53 3.88 -84.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033894198.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.192 kcal (2) G-P(sol) polarization free energy of solvation -88.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds