Wall clock time and date at job start Tue Mar 31 2020 17:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47591 * 2 1 4 4 C 1.34768 * 120.00549 * 246.10984 * 3 2 1 5 5 O 1.21587 * 120.00215 * 183.21707 * 4 3 2 6 6 C 1.47536 * 119.99815 * 3.20896 * 4 3 2 7 7 C 1.39528 * 120.05488 * 33.38525 * 6 4 3 8 8 C 1.37787 * 120.18749 * 180.02562 * 7 6 4 9 9 C 1.38642 * 119.97159 * 0.17931 * 8 7 6 10 10 C 1.37651 * 120.32494 * 359.91213 * 9 8 7 11 11 C 1.38877 * 120.87040 * 359.50055 * 10 9 8 12 12 O 1.35854 * 111.31099 * 180.88205 * 11 10 9 13 13 C 1.43785 * 109.31597 * 341.16264 * 12 11 10 14 14 C 1.51673 * 132.13566 * 179.45260 * 10 9 8 15 15 C 1.46508 * 119.99306 * 66.10440 * 3 2 1 16 16 H 1.08998 * 110.89068 * 10.50070 * 15 3 2 17 17 C 1.55153 * 111.00551 * 246.61363 * 15 3 2 18 18 C 1.54324 * 102.94250 * 277.43157 * 17 15 3 19 19 N 1.47023 * 107.27424 * 337.80523 * 18 17 15 20 20 C 1.36933 * 125.65239 * 178.98297 * 19 18 17 21 21 H 1.07998 * 120.00577 * 179.97438 * 20 19 18 22 22 C 1.38821 * 119.99762 * 359.97438 * 20 19 18 23 23 N 1.31614 * 120.00059 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99856 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47012 * 90.00024 * 24 22 20 26 26 H 1.48500 * 109.46828 * 209.99971 * 24 22 20 27 27 H 1.48501 * 109.47261 * 329.99919 * 24 22 20 28 28 C 1.47430 * 108.69907 * 358.94359 * 19 18 17 29 29 H 1.09003 * 109.46969 * 300.00233 * 1 2 3 30 30 H 1.09003 * 109.46638 * 59.99464 * 1 2 3 31 31 H 1.08996 * 109.47486 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47077 * 240.00253 * 2 1 3 33 33 H 1.09001 * 109.47329 * 120.00254 * 2 1 3 34 34 H 1.08004 * 119.90103 * 359.97438 * 7 6 4 35 35 H 1.07992 * 120.01147 * 180.19750 * 8 7 6 36 36 H 1.08002 * 119.83674 * 179.97438 * 9 8 7 37 37 H 1.09001 * 110.75042 * 269.29196 * 13 12 11 38 38 H 1.08996 * 110.91233 * 146.00131 * 13 12 11 39 39 H 1.09001 * 110.95007 * 313.63905 * 14 10 9 40 40 H 1.09003 * 110.94255 * 77.30322 * 14 10 9 41 41 H 1.09004 * 110.71770 * 35.79412 * 17 15 3 42 42 H 1.08994 * 110.71907 * 159.06754 * 17 15 3 43 43 H 1.09007 * 109.88522 * 97.22367 * 18 17 15 44 44 H 1.09003 * 109.88306 * 218.23221 * 18 17 15 45 45 H 0.97000 * 120.00411 * 179.97438 * 23 22 20 46 46 H 1.08995 * 110.36304 * 265.28805 * 28 19 18 47 47 H 1.09004 * 110.36298 * 142.96705 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.6887 1.8590 -1.0671 5 8 3.1448 2.9858 -1.0438 6 6 2.8692 1.0146 -2.2634 7 6 1.8785 0.1039 -2.6318 8 6 2.0444 -0.6864 -3.7483 9 6 3.2002 -0.5801 -4.5066 10 6 4.1848 0.3138 -4.1511 11 6 4.0376 1.1306 -3.0377 12 8 5.1117 1.9471 -2.8787 13 6 6.2243 1.4192 -3.6211 14 6 5.5330 0.6397 -4.7648 15 6 1.7780 2.2430 1.1601 16 1 1.3939 1.6651 2.0007 17 6 0.8166 3.4061 0.7992 18 6 1.7572 4.4434 0.1506 19 7 3.1182 4.1568 0.6271 20 6 4.2497 4.8396 0.2686 21 1 5.2071 4.5503 0.6762 22 6 4.1663 5.9039 -0.6187 23 7 2.9997 6.2563 -1.1159 24 14 5.7097 6.8359 -1.1072 25 1 6.3101 6.2037 -2.3092 26 1 5.3603 8.2467 -1.4122 27 1 6.6856 6.7984 0.0115 28 6 3.0628 3.0129 1.5555 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8900 34 1 0.9793 0.0176 -2.0397 35 1 1.2744 -1.3881 -4.0327 36 1 3.3282 -1.2009 -5.3810 37 1 6.8189 0.7485 -3.0009 38 1 6.8423 2.2235 -4.0202 39 1 6.0829 -0.2706 -5.0036 40 1 5.4172 1.2660 -5.6494 41 1 0.0597 3.0743 0.0885 42 1 0.3519 3.8147 1.6965 43 1 1.7176 4.3522 -0.9349 44 1 1.4617 5.4494 0.4489 45 1 2.9412 7.0002 -1.7356 46 1 2.9934 3.3632 2.5853 47 1 3.9398 2.3782 1.4281 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033962844.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:37 Heat of formation + Delta-G solvation = 42.658198 kcal Electronic energy + Delta-G solvation = -30801.618535 eV Core-core repulsion = 26952.896561 eV Total energy + Delta-G solvation = -3848.721973 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.24996 -41.09156 -38.65370 -37.46200 -36.61548 -34.25110 -33.38351 -31.44179 -31.20069 -30.54838 -30.15453 -28.68407 -26.38053 -25.08748 -24.09279 -23.69326 -22.78926 -22.12685 -21.74819 -19.54010 -18.71410 -18.47542 -17.90386 -17.48997 -17.09915 -16.88121 -16.42203 -16.27999 -15.94705 -15.65007 -15.46802 -14.89485 -14.52816 -14.12165 -14.00180 -13.82182 -13.69733 -13.62286 -13.45509 -13.39774 -13.10406 -12.85906 -12.75983 -12.69449 -12.60569 -12.48742 -12.30281 -12.08534 -12.02120 -11.97816 -11.79140 -11.62934 -11.36853 -11.30968 -10.53641 -10.10965 -9.69684 -9.26232 -9.06911 -8.23665 -7.61774 -4.83160 0.06438 0.36356 1.36223 1.42187 1.47444 2.21619 2.27752 2.39801 2.60182 2.87963 3.44755 3.56614 3.60241 3.77369 3.86984 4.00315 4.04383 4.06983 4.13735 4.23616 4.30095 4.38319 4.42571 4.46241 4.48586 4.56776 4.67485 4.75302 4.78793 4.82514 4.87762 4.95364 5.00090 5.06668 5.07571 5.10020 5.20667 5.30149 5.38516 5.43567 5.50676 5.53074 5.75252 5.83822 6.02315 6.08162 6.25149 6.43174 6.81737 7.34474 7.86991 8.05946 8.69491 9.50595 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.010087 B = 0.006842 C = 0.004479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2775.127516 B = 4091.469466 C = 6249.523665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.079 3.921 3 N -0.606 5.606 4 C 0.487 3.513 5 O -0.454 6.454 6 C -0.173 4.173 7 C -0.074 4.074 8 C -0.149 4.149 9 C -0.050 4.050 10 C -0.194 4.194 11 C 0.117 3.883 12 O -0.328 6.328 13 C 0.032 3.968 14 C -0.094 4.094 15 C 0.150 3.850 16 H 0.132 0.868 17 C -0.142 4.142 18 C 0.206 3.794 19 N -0.576 5.576 20 C -0.180 4.180 21 H 0.055 0.945 22 C -0.068 4.068 23 N -0.949 5.949 24 Si 0.956 3.044 25 H -0.302 1.302 26 H -0.295 1.295 27 H -0.272 1.272 28 C 0.123 3.877 29 H 0.062 0.938 30 H 0.049 0.951 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.080 0.920 34 H 0.165 0.835 35 H 0.174 0.826 36 H 0.165 0.835 37 H 0.087 0.913 38 H 0.108 0.892 39 H 0.126 0.874 40 H 0.095 0.905 41 H 0.069 0.931 42 H 0.084 0.916 43 H 0.010 0.990 44 H -0.017 1.017 45 H 0.231 0.769 46 H 0.035 0.965 47 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.272 -23.635 -4.398 24.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.042 4.042 3 N -0.343 5.343 4 C 0.272 3.728 5 O -0.323 6.323 6 C -0.177 4.177 7 C -0.092 4.092 8 C -0.166 4.166 9 C -0.068 4.068 10 C -0.195 4.195 11 C 0.070 3.930 12 O -0.242 6.242 13 C -0.042 4.042 14 C -0.131 4.131 15 C 0.046 3.954 16 H 0.149 0.851 17 C -0.182 4.182 18 C 0.081 3.919 19 N -0.300 5.300 20 C -0.311 4.311 21 H 0.073 0.927 22 C -0.259 4.259 23 N -0.601 5.601 24 Si 0.787 3.213 25 H -0.231 1.231 26 H -0.222 1.222 27 H -0.197 1.197 28 C -0.003 4.003 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.114 0.886 32 H 0.121 0.879 33 H 0.098 0.902 34 H 0.182 0.818 35 H 0.191 0.809 36 H 0.182 0.818 37 H 0.105 0.895 38 H 0.126 0.874 39 H 0.145 0.855 40 H 0.113 0.887 41 H 0.088 0.912 42 H 0.102 0.898 43 H 0.028 0.972 44 H 0.001 0.999 45 H 0.040 0.960 46 H 0.053 0.947 47 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -3.873 -22.615 -4.354 23.354 hybrid contribution 1.254 1.390 -0.503 1.939 sum -2.619 -21.225 -4.857 21.931 Atomic orbital electron populations 1.22202 0.94128 1.03711 1.02327 1.22358 0.95798 0.81440 1.04597 1.47799 1.57376 1.13426 1.15706 1.19104 0.81202 0.88222 0.84223 1.91644 1.43820 1.17232 1.79652 1.19749 0.96436 1.03040 0.98463 1.21778 0.97675 0.92422 0.97317 1.21440 0.98785 1.01588 0.94834 1.20873 0.91148 0.95199 0.99562 1.21175 1.00360 1.01355 0.96579 1.20016 0.89071 0.89841 0.94056 1.87054 1.20493 1.46285 1.70336 1.24174 0.88275 0.99211 0.92581 1.21805 0.91313 1.02229 0.97756 1.22150 0.94310 0.90671 0.88297 0.85057 1.23206 0.97465 0.96576 1.00925 1.20697 0.83132 0.92425 0.95641 1.44219 1.03272 1.33507 1.48978 1.18938 0.86400 1.06487 1.19251 0.92734 1.25208 0.98635 1.01168 1.00892 1.70200 1.23131 1.30378 1.36434 0.85365 0.80484 0.77551 0.77874 1.23092 1.22213 1.19709 1.21970 0.96175 0.89151 0.93003 0.91893 0.93190 0.88567 0.87943 0.90217 0.81803 0.80892 0.81772 0.89508 0.87403 0.85539 0.88710 0.91226 0.89791 0.97227 0.99879 0.95965 0.94708 0.96549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.67 9.28 71.98 0.67 -2.00 16 2 C 0.08 1.72 5.59 86.38 0.48 2.20 16 3 N -0.61 -20.64 2.66 -793.85 -2.11 -22.74 16 4 C 0.49 21.50 6.86 86.70 0.60 22.09 16 5 O -0.45 -26.01 8.39 -0.28 0.00 -26.01 16 6 C -0.17 -6.42 5.42 -19.93 -0.11 -6.53 16 7 C -0.07 -1.88 7.31 22.47 0.16 -1.72 16 8 C -0.15 -2.77 10.05 22.26 0.22 -2.54 16 9 C -0.05 -0.98 10.02 22.23 0.22 -0.76 16 10 C -0.19 -5.30 6.27 -19.54 -0.12 -5.43 16 11 C 0.12 4.50 6.70 23.01 0.15 4.65 16 12 O -0.33 -14.61 10.61 -88.21 -0.94 -15.54 16 13 C 0.03 0.94 8.01 72.57 0.58 1.52 16 14 C -0.09 -2.09 7.12 30.74 0.22 -1.87 16 15 C 0.15 5.28 3.26 46.38 0.15 5.43 16 16 H 0.13 3.34 7.94 -2.39 -0.02 3.32 16 17 C -0.14 -5.63 6.53 31.78 0.21 -5.42 16 18 C 0.21 11.54 4.22 86.73 0.37 11.91 16 19 N -0.58 -33.21 1.73 -691.95 -1.20 -34.41 16 20 C -0.18 -11.64 8.76 84.04 0.74 -10.90 16 21 H 0.05 3.51 7.83 -2.91 -0.02 3.48 16 22 C -0.07 -4.45 5.49 84.86 0.47 -3.98 16 23 N -0.95 -65.29 10.31 21.65 0.22 -65.07 16 24 Si 0.96 53.29 29.55 68.60 2.03 55.31 16 25 H -0.30 -17.03 7.11 99.48 0.71 -16.33 16 26 H -0.30 -16.22 7.11 99.48 0.71 -15.52 16 27 H -0.27 -14.26 7.11 99.48 0.71 -13.55 16 28 C 0.12 5.63 6.19 86.85 0.54 6.17 16 29 H 0.06 1.04 7.77 -2.39 -0.02 1.02 16 30 H 0.05 0.92 7.02 -2.39 -0.02 0.91 16 31 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.10 2.14 3.95 -2.38 -0.01 2.13 16 33 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.16 3.41 3.87 -2.91 -0.01 3.40 16 35 H 0.17 1.69 8.06 -2.91 -0.02 1.67 16 36 H 0.16 1.87 8.06 -2.91 -0.02 1.84 16 37 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16 39 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 42 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 43 H 0.01 0.63 5.81 -2.38 -0.01 0.62 16 44 H -0.02 -1.07 7.50 -2.39 -0.02 -1.08 16 45 H 0.23 15.64 8.31 -92.71 -0.77 14.87 16 46 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 47 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 Total: -1.00 -94.54 359.17 4.53 -90.01 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: 0.98 Total: 5.63 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: 5.54 Total: 12.82 kcal Atomic # 7 Polarization: -119.13 SS G_CDS: -3.08 Total: -122.22 kcal Atomic # 8 Polarization: -40.61 SS G_CDS: -0.94 Total: -41.55 kcal Atomic # 14 Polarization: 53.29 SS G_CDS: 2.03 Total: 55.31 kcal Total: -94.54 4.53 -90.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033962844.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.672 kcal (2) G-P(sol) polarization free energy of solvation -94.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds