Wall clock time and date at job start Tue Mar 31 2020 17:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46504 * 109.46933 * 2 1 4 4 C 1.34774 * 119.99874 * 87.28686 * 3 2 1 5 5 O 1.21581 * 120.00027 * 52.52543 * 4 3 2 6 6 C 1.47607 * 119.99775 * 232.52588 * 4 3 2 7 7 C 1.39749 * 120.26468 * 311.76046 * 6 4 3 8 8 C 1.37473 * 120.20214 * 179.83371 * 7 6 4 9 9 C 1.39587 * 120.42838 * 0.09043 * 8 7 6 10 10 C 1.39181 * 119.10500 * 0.18724 * 9 8 7 11 11 C 1.37308 * 120.93323 * 359.32589 * 10 9 8 12 12 C 1.51674 * 106.99858 * 179.44520 * 10 9 8 13 13 C 1.54700 * 101.89310 * 344.47533 * 12 10 9 14 14 O 1.36003 * 129.71599 * 180.62441 * 9 8 7 15 15 C 1.46493 * 119.99710 * 267.28517 * 3 2 1 16 16 H 1.08996 * 110.88946 * 337.06713 * 15 3 2 17 17 C 1.55164 * 111.00340 * 100.95184 * 15 3 2 18 18 C 1.54321 * 102.94216 * 153.57576 * 17 15 3 19 19 N 1.47023 * 107.27257 * 337.80454 * 18 17 15 20 20 C 1.36932 * 125.65067 * 178.99296 * 19 18 17 21 21 H 1.08004 * 120.00341 * 179.97438 * 20 19 18 22 22 C 1.38813 * 119.99835 * 359.97143 * 20 19 18 23 23 N 1.31621 * 120.00291 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99946 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47021 * 89.99845 * 24 22 20 26 26 H 1.48501 * 109.46846 * 209.99927 * 24 22 20 27 27 H 1.48498 * 109.46977 * 329.99979 * 24 22 20 28 28 C 1.47419 * 108.70084 * 358.94026 * 19 18 17 29 29 H 1.08999 * 109.46937 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47209 * 300.00273 * 1 2 3 31 31 H 1.09007 * 109.46673 * 60.00362 * 1 2 3 32 32 H 1.08992 * 109.47209 * 239.99727 * 2 1 3 33 33 H 1.08999 * 109.46583 * 119.99996 * 2 1 3 34 34 H 1.08001 * 119.90308 * 359.85238 * 7 6 4 35 35 H 1.08005 * 119.78431 * 180.11459 * 8 7 6 36 36 H 1.08001 * 120.07280 * 180.61557 * 11 10 9 37 37 H 1.09002 * 110.94374 * 226.32730 * 12 10 9 38 38 H 1.08999 * 110.94874 * 102.62241 * 12 10 9 39 39 H 1.09000 * 110.74332 * 267.04863 * 13 12 10 40 40 H 1.09000 * 110.90108 * 143.77834 * 13 12 10 41 41 H 1.09004 * 110.71804 * 271.93497 * 17 15 3 42 42 H 1.08992 * 110.72059 * 35.20481 * 17 15 3 43 43 H 1.09004 * 109.88737 * 97.22296 * 18 17 15 44 44 H 1.09004 * 109.87674 * 218.38708 * 18 17 15 45 45 H 0.96998 * 120.00215 * 180.02562 * 23 22 20 46 46 H 1.09001 * 110.37395 * 265.29124 * 28 19 18 47 47 H 1.09006 * 110.36656 * 142.96996 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1909 2.0350 1.1659 5 8 2.8564 1.5337 2.0512 6 6 1.5717 3.3596 1.3678 7 6 1.7009 4.3534 0.3938 8 6 1.1209 5.5855 0.5817 9 6 0.3999 5.8573 1.7456 10 6 0.2796 4.8656 2.7146 11 6 0.8466 3.6284 2.5325 12 6 -0.5347 5.4529 3.8515 13 6 -0.4729 6.9668 3.5391 14 8 -0.2531 6.9906 2.1187 15 6 2.3191 2.0518 -1.2673 16 1 2.5228 1.3244 -2.0530 17 6 1.1673 3.0067 -1.6783 18 6 1.8855 4.0609 -2.5468 19 7 3.3079 4.0368 -2.1754 20 6 4.2909 4.8117 -2.7305 21 1 5.3105 4.7191 -2.3865 22 6 3.9771 5.7162 -3.7356 23 7 2.7345 5.8295 -4.1546 24 14 5.3183 6.7729 -4.4934 25 1 5.9084 6.0642 -5.6573 26 1 4.7371 8.0636 -4.9424 27 1 6.3754 7.0308 -3.4829 28 6 3.5002 3.0410 -1.1055 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.2579 4.1527 -0.5095 35 1 1.2234 6.3480 -0.1764 36 1 0.7362 2.8658 3.2893 37 1 -0.0732 5.2347 4.8146 38 1 -1.5624 5.0907 3.8225 39 1 0.3577 7.4362 4.0661 40 1 -1.4141 7.4548 3.7921 41 1 0.4149 2.4749 -2.2608 42 1 0.7192 3.4709 -0.7999 43 1 1.7736 3.8108 -3.6018 44 1 1.4681 5.0487 -2.3515 45 1 2.5153 6.4613 -4.8572 46 1 3.4610 3.5219 -0.1280 47 1 4.4500 2.5224 -1.2362 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033968760.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:12 Heat of formation + Delta-G solvation = 57.123208 kcal Electronic energy + Delta-G solvation = -30020.980691 eV Core-core repulsion = 26172.885968 eV Total energy + Delta-G solvation = -3848.094723 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.34690 -40.32914 -37.92051 -36.77682 -35.15386 -32.85897 -32.32459 -30.83547 -29.87140 -29.32143 -28.96966 -27.10226 -24.80497 -24.40097 -23.17782 -22.14152 -21.79116 -21.13181 -20.22324 -18.67630 -17.56493 -17.21222 -16.82386 -16.56964 -16.25708 -15.80509 -15.19331 -14.71145 -14.62281 -13.98486 -13.80122 -13.73269 -13.49690 -13.32406 -13.14106 -13.01893 -12.67216 -12.59260 -12.38136 -12.17377 -11.93958 -11.89082 -11.81868 -11.53797 -11.12745 -11.03628 -10.98790 -10.86093 -10.73220 -10.39831 -10.24437 -10.12681 -9.82790 -9.78679 -9.60205 -8.74360 -8.52824 -8.18904 -7.87655 -6.99730 -5.81274 -3.18091 1.17506 1.54430 2.52781 3.21014 3.31688 3.36795 3.42948 3.44297 3.88855 4.38645 4.41129 4.54235 4.80382 4.87256 4.96968 5.10683 5.16309 5.24459 5.27810 5.35558 5.35939 5.45736 5.47312 5.51340 5.58255 5.60966 5.66857 5.76396 5.78161 5.86977 5.91283 6.09967 6.16766 6.21510 6.23448 6.38111 6.40620 6.48966 6.50791 6.54345 6.72357 6.94163 7.09227 7.29590 7.43899 7.46337 7.63705 7.72844 8.10995 8.15030 9.09117 9.67903 10.28962 11.29370 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.009739 B = 0.005233 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2874.465632 B = 5349.521879 C = 7362.488627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.126 3.874 3 N -0.655 5.655 4 C 0.608 3.392 5 O -0.509 6.509 6 C -0.187 4.187 7 C -0.069 4.069 8 C -0.144 4.144 9 C 0.126 3.874 10 C -0.202 4.202 11 C -0.022 4.022 12 C -0.104 4.104 13 C 0.050 3.950 14 O -0.303 6.303 15 C 0.139 3.861 16 H 0.099 0.901 17 C -0.189 4.189 18 C 0.169 3.831 19 N -0.596 5.596 20 C -0.237 4.237 21 H 0.081 0.919 22 C 0.000 4.000 23 N -0.918 5.918 24 Si 0.913 3.087 25 H -0.288 1.288 26 H -0.290 1.290 27 H -0.280 1.280 28 C 0.096 3.904 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.211 0.789 35 H 0.137 0.863 36 H 0.123 0.877 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.104 0.896 41 H 0.065 0.935 42 H 0.087 0.913 43 H 0.054 0.946 44 H 0.052 0.948 45 H 0.255 0.745 46 H 0.041 0.959 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.910 -5.657 12.103 16.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.004 3.996 3 N -0.392 5.392 4 C 0.399 3.601 5 O -0.382 6.382 6 C -0.191 4.191 7 C -0.086 4.086 8 C -0.163 4.163 9 C 0.080 3.920 10 C -0.203 4.203 11 C -0.041 4.041 12 C -0.141 4.141 13 C -0.025 4.025 14 O -0.217 6.217 15 C 0.035 3.965 16 H 0.117 0.883 17 C -0.227 4.227 18 C 0.044 3.956 19 N -0.324 5.324 20 C -0.364 4.364 21 H 0.099 0.901 22 C -0.197 4.197 23 N -0.565 5.565 24 Si 0.743 3.257 25 H -0.215 1.215 26 H -0.216 1.216 27 H -0.206 1.206 28 C -0.030 4.030 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.226 0.774 35 H 0.155 0.845 36 H 0.141 0.859 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.122 0.878 41 H 0.083 0.917 42 H 0.105 0.895 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.065 0.935 46 H 0.058 0.942 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.592 -5.573 12.308 16.011 hybrid contribution 0.443 0.602 -0.366 0.832 sum -8.149 -4.971 11.942 15.288 Atomic orbital electron populations 1.22269 0.96475 1.01642 1.02576 1.21282 0.93587 0.81928 1.02836 1.47216 1.72735 1.13955 1.05250 1.18067 0.76740 0.84044 0.81247 1.90699 1.33053 1.69127 1.45368 1.20049 1.06036 0.96084 0.96901 1.23461 0.94709 0.90520 0.99910 1.20413 0.99902 0.98972 0.96978 1.19953 0.91485 0.85290 0.95237 1.20480 1.05874 0.95324 0.98595 1.20030 0.94253 0.94754 0.95058 1.21713 1.00340 0.94279 0.97763 1.23819 1.02619 0.96491 0.79538 1.86811 1.71624 1.39018 1.24221 1.22347 0.95636 0.94426 0.84129 0.88300 1.24165 0.98260 0.98880 1.01434 1.21320 0.82442 0.95248 0.96580 1.44549 1.04992 1.42723 1.40145 1.19056 0.88584 1.13908 1.14895 0.90130 1.24802 0.96665 0.99450 0.98782 1.69945 1.16249 1.38812 1.31449 0.86110 0.80678 0.79699 0.79215 1.21482 1.21565 1.20554 1.22366 0.96368 0.90603 0.93675 0.91946 0.92884 0.91924 0.90550 0.90907 0.77353 0.84488 0.85869 0.89296 0.89481 0.90595 0.87773 0.91670 0.89475 0.92770 0.92956 0.93504 0.94174 0.93165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.85 10.23 37.16 0.38 -1.47 16 2 C 0.13 1.56 6.39 -4.04 -0.03 1.54 16 3 N -0.65 -10.26 2.53 -164.86 -0.42 -10.68 16 4 C 0.61 10.70 5.17 -12.44 -0.06 10.64 16 5 O -0.51 -10.02 17.43 5.29 0.09 -9.92 16 6 C -0.19 -3.23 5.22 -104.92 -0.55 -3.77 16 7 C -0.07 -1.27 4.73 -39.30 -0.19 -1.46 16 8 C -0.14 -2.61 10.05 -39.36 -0.40 -3.01 16 9 C 0.13 2.06 7.04 -38.73 -0.27 1.79 16 10 C -0.20 -2.92 6.26 -104.13 -0.65 -3.57 16 11 C -0.02 -0.34 9.71 -39.33 -0.38 -0.72 16 12 C -0.10 -1.07 7.12 -26.51 -0.19 -1.25 16 13 C 0.05 0.51 8.00 38.05 0.30 0.82 16 14 O -0.30 -4.56 11.09 -19.75 -0.22 -4.78 16 15 C 0.14 2.36 3.52 -65.78 -0.23 2.13 16 16 H 0.10 1.58 7.87 -51.93 -0.41 1.18 16 17 C -0.19 -3.33 5.88 -24.89 -0.15 -3.48 16 18 C 0.17 3.76 4.44 -3.07 -0.01 3.75 16 19 N -0.60 -14.15 2.96 -172.91 -0.51 -14.66 16 20 C -0.24 -6.25 10.28 -15.06 -0.15 -6.41 16 21 H 0.08 2.08 7.83 -52.48 -0.41 1.67 16 22 C 0.00 0.00 5.49 -17.43 -0.10 -0.10 16 23 N -0.92 -25.46 10.31 55.49 0.57 -24.89 16 24 Si 0.91 21.39 29.55 -169.99 -5.02 16.37 16 25 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 27 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 28 C 0.10 1.95 5.72 -2.53 -0.01 1.94 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.08 0.82 7.86 -51.93 -0.41 0.42 16 33 H 0.07 0.91 7.75 -51.93 -0.40 0.51 16 34 H 0.21 4.17 0.84 -56.19 -0.05 4.13 16 35 H 0.14 2.60 8.06 -52.48 -0.42 2.17 16 36 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.09 1.56 4.00 -54.19 -0.22 1.34 16 43 H 0.05 1.34 7.38 -51.93 -0.38 0.96 16 44 H 0.05 1.29 7.49 -51.93 -0.39 0.90 16 45 H 0.25 6.91 8.31 -40.82 -0.34 6.58 16 46 H 0.04 0.86 4.22 -51.93 -0.22 0.64 16 47 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 363.38 15.07 5.48 5.48 Total: -1.00 -30.37 363.38 -9.39 -39.76 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -6.67 Total: 5.97 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -2.69 Total: -2.63 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: -0.36 Total: -50.23 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -0.13 Total: -14.70 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.37 -9.39 -39.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033968760.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.882 kcal (2) G-P(sol) polarization free energy of solvation -30.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds