Wall clock time and date at job start Tue Mar 31 2020 17:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46504 * 109.46933 * 2 1 4 4 C 1.34774 * 119.99874 * 87.28686 * 3 2 1 5 5 O 1.21581 * 120.00027 * 52.52543 * 4 3 2 6 6 C 1.47607 * 119.99775 * 232.52588 * 4 3 2 7 7 C 1.39749 * 120.26468 * 311.76046 * 6 4 3 8 8 C 1.37473 * 120.20214 * 179.83371 * 7 6 4 9 9 C 1.39587 * 120.42838 * 0.09043 * 8 7 6 10 10 C 1.39181 * 119.10500 * 0.18724 * 9 8 7 11 11 C 1.37308 * 120.93323 * 359.32589 * 10 9 8 12 12 C 1.51674 * 106.99858 * 179.44520 * 10 9 8 13 13 C 1.54700 * 101.89310 * 344.47533 * 12 10 9 14 14 O 1.36003 * 129.71599 * 180.62441 * 9 8 7 15 15 C 1.46493 * 119.99710 * 267.28517 * 3 2 1 16 16 H 1.08996 * 110.88946 * 337.06713 * 15 3 2 17 17 C 1.55164 * 111.00340 * 100.95184 * 15 3 2 18 18 C 1.54321 * 102.94216 * 153.57576 * 17 15 3 19 19 N 1.47023 * 107.27257 * 337.80454 * 18 17 15 20 20 C 1.36932 * 125.65067 * 178.99296 * 19 18 17 21 21 H 1.08004 * 120.00341 * 179.97438 * 20 19 18 22 22 C 1.38813 * 119.99835 * 359.97143 * 20 19 18 23 23 N 1.31621 * 120.00291 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99946 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47021 * 89.99845 * 24 22 20 26 26 H 1.48501 * 109.46846 * 209.99927 * 24 22 20 27 27 H 1.48498 * 109.46977 * 329.99979 * 24 22 20 28 28 C 1.47419 * 108.70084 * 358.94026 * 19 18 17 29 29 H 1.08999 * 109.46937 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47209 * 300.00273 * 1 2 3 31 31 H 1.09007 * 109.46673 * 60.00362 * 1 2 3 32 32 H 1.08992 * 109.47209 * 239.99727 * 2 1 3 33 33 H 1.08999 * 109.46583 * 119.99996 * 2 1 3 34 34 H 1.08001 * 119.90308 * 359.85238 * 7 6 4 35 35 H 1.08005 * 119.78431 * 180.11459 * 8 7 6 36 36 H 1.08001 * 120.07280 * 180.61557 * 11 10 9 37 37 H 1.09002 * 110.94374 * 226.32730 * 12 10 9 38 38 H 1.08999 * 110.94874 * 102.62241 * 12 10 9 39 39 H 1.09000 * 110.74332 * 267.04863 * 13 12 10 40 40 H 1.09000 * 110.90108 * 143.77834 * 13 12 10 41 41 H 1.09004 * 110.71804 * 271.93497 * 17 15 3 42 42 H 1.08992 * 110.72059 * 35.20481 * 17 15 3 43 43 H 1.09004 * 109.88737 * 97.22296 * 18 17 15 44 44 H 1.09004 * 109.87674 * 218.38708 * 18 17 15 45 45 H 0.96998 * 120.00215 * 180.02562 * 23 22 20 46 46 H 1.09001 * 110.37395 * 265.29124 * 28 19 18 47 47 H 1.09006 * 110.36656 * 142.96996 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1909 2.0350 1.1659 5 8 2.8564 1.5337 2.0512 6 6 1.5717 3.3596 1.3678 7 6 1.7009 4.3534 0.3938 8 6 1.1209 5.5855 0.5817 9 6 0.3999 5.8573 1.7456 10 6 0.2796 4.8656 2.7146 11 6 0.8466 3.6284 2.5325 12 6 -0.5347 5.4529 3.8515 13 6 -0.4729 6.9668 3.5391 14 8 -0.2531 6.9906 2.1187 15 6 2.3191 2.0518 -1.2673 16 1 2.5228 1.3244 -2.0530 17 6 1.1673 3.0067 -1.6783 18 6 1.8855 4.0609 -2.5468 19 7 3.3079 4.0368 -2.1754 20 6 4.2909 4.8117 -2.7305 21 1 5.3105 4.7191 -2.3865 22 6 3.9771 5.7162 -3.7356 23 7 2.7345 5.8295 -4.1546 24 14 5.3183 6.7729 -4.4934 25 1 5.9084 6.0642 -5.6573 26 1 4.7371 8.0636 -4.9424 27 1 6.3754 7.0308 -3.4829 28 6 3.5002 3.0410 -1.1055 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.2579 4.1527 -0.5095 35 1 1.2234 6.3480 -0.1764 36 1 0.7362 2.8658 3.2893 37 1 -0.0732 5.2347 4.8146 38 1 -1.5624 5.0907 3.8225 39 1 0.3577 7.4362 4.0661 40 1 -1.4141 7.4548 3.7921 41 1 0.4149 2.4749 -2.2608 42 1 0.7192 3.4709 -0.7999 43 1 1.7736 3.8108 -3.6018 44 1 1.4681 5.0487 -2.3515 45 1 2.5153 6.4613 -4.8572 46 1 3.4610 3.5219 -0.1280 47 1 4.4500 2.5224 -1.2362 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033968760.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:11 Heat of formation + Delta-G solvation = 39.970467 kcal Electronic energy + Delta-G solvation = -30021.724490 eV Core-core repulsion = 26172.885968 eV Total energy + Delta-G solvation = -3848.838522 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.63212 -41.56366 -39.46204 -38.02225 -36.56956 -34.43888 -33.60183 -32.15332 -31.28778 -30.78040 -30.15253 -28.70720 -26.54312 -25.67100 -24.25569 -23.28071 -22.91761 -22.61589 -21.98846 -19.96013 -19.08516 -18.83144 -18.07539 -17.83033 -17.31063 -17.05650 -16.75614 -16.38032 -16.08337 -15.36759 -15.15704 -15.05080 -14.77294 -14.63044 -14.39169 -14.09567 -13.99078 -13.89831 -13.67517 -13.63920 -13.33333 -13.18277 -12.93526 -12.83008 -12.71909 -12.57687 -12.42004 -12.17154 -12.04959 -11.97338 -11.87667 -11.67974 -11.55100 -11.19370 -11.06546 -10.72398 -9.87002 -9.47767 -9.15042 -8.91778 -7.86645 -5.24794 -0.12785 0.27315 1.19132 1.47700 1.48461 1.56986 1.94294 2.24914 2.48344 2.61421 3.30226 3.35531 3.47082 3.59841 3.65484 3.74543 3.88334 3.91416 4.05459 4.15661 4.19490 4.23394 4.37528 4.41513 4.47325 4.55026 4.59856 4.62469 4.63435 4.79543 4.84305 4.84601 4.90561 4.95599 4.99089 5.06422 5.08279 5.22195 5.25160 5.35504 5.38608 5.45345 5.59832 5.60188 5.74097 5.85669 6.10530 6.14285 6.30918 6.82082 7.06422 7.69355 8.30860 9.22156 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.009739 B = 0.005233 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2874.465632 B = 5349.521879 C = 7362.488627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.119 3.881 3 N -0.651 5.651 4 C 0.610 3.390 5 O -0.534 6.534 6 C -0.198 4.198 7 C -0.082 4.082 8 C -0.168 4.168 9 C 0.120 3.880 10 C -0.193 4.193 11 C -0.020 4.020 12 C -0.097 4.097 13 C 0.042 3.958 14 O -0.324 6.324 15 C 0.157 3.843 16 H 0.117 0.883 17 C -0.171 4.171 18 C 0.183 3.817 19 N -0.611 5.611 20 C -0.249 4.249 21 H 0.080 0.920 22 C -0.051 4.051 23 N -0.942 5.942 24 Si 0.974 3.026 25 H -0.283 1.283 26 H -0.294 1.294 27 H -0.273 1.273 28 C 0.095 3.905 29 H 0.088 0.912 30 H 0.043 0.957 31 H 0.058 0.942 32 H 0.097 0.903 33 H 0.074 0.926 34 H 0.192 0.808 35 H 0.111 0.889 36 H 0.146 0.854 37 H 0.116 0.884 38 H 0.108 0.892 39 H 0.087 0.913 40 H 0.138 0.862 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.024 0.976 44 H 0.018 0.982 45 H 0.249 0.751 46 H 0.034 0.966 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.055 -6.945 14.188 18.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.002 4.002 3 N -0.387 5.387 4 C 0.402 3.598 5 O -0.409 6.409 6 C -0.202 4.202 7 C -0.100 4.100 8 C -0.186 4.186 9 C 0.074 3.926 10 C -0.194 4.194 11 C -0.038 4.038 12 C -0.134 4.134 13 C -0.032 4.032 14 O -0.238 6.238 15 C 0.052 3.948 16 H 0.135 0.865 17 C -0.210 4.210 18 C 0.058 3.942 19 N -0.338 5.338 20 C -0.377 4.377 21 H 0.098 0.902 22 C -0.245 4.245 23 N -0.590 5.590 24 Si 0.802 3.198 25 H -0.210 1.210 26 H -0.221 1.221 27 H -0.198 1.198 28 C -0.031 4.031 29 H 0.107 0.893 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.115 0.885 33 H 0.092 0.908 34 H 0.208 0.792 35 H 0.129 0.871 36 H 0.163 0.837 37 H 0.134 0.866 38 H 0.127 0.873 39 H 0.105 0.895 40 H 0.155 0.845 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.043 0.957 44 H 0.036 0.964 45 H 0.059 0.941 46 H 0.051 0.949 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.744 -6.892 14.412 18.712 hybrid contribution 0.765 1.065 -0.903 1.592 sum -8.979 -5.827 13.509 17.236 Atomic orbital electron populations 1.22211 0.94968 1.03188 1.01905 1.21587 0.94745 0.79942 1.03934 1.47251 1.72289 1.15130 1.03992 1.18153 0.76243 0.83994 0.81415 1.90687 1.34209 1.69752 1.46287 1.20121 1.06868 0.95728 0.97514 1.23172 0.95538 0.91222 1.00039 1.20260 1.01909 0.98662 0.97817 1.19997 0.91079 0.86578 0.94911 1.20949 1.04884 0.94257 0.99318 1.20286 0.93334 0.95620 0.94594 1.21872 1.00897 0.93497 0.97097 1.24255 1.04894 0.97200 0.76875 1.86794 1.71092 1.38603 1.27302 1.22110 0.93507 0.94051 0.85138 0.86475 1.23974 0.98449 0.97686 1.00858 1.21000 0.82337 0.95100 0.95728 1.44675 1.05109 1.43294 1.40704 1.19364 0.89293 1.14280 1.14791 0.90167 1.25535 0.98569 1.00809 0.99578 1.70140 1.17768 1.39322 1.31790 0.85163 0.78427 0.77799 0.78427 1.21022 1.22052 1.19806 1.22445 0.97767 0.90574 0.92281 0.89303 0.93797 0.92300 0.88497 0.90802 0.79155 0.87091 0.83658 0.86614 0.87334 0.89484 0.84452 0.89333 0.89369 0.95725 0.96359 0.94135 0.94852 0.93457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.08 10.23 71.98 0.74 -2.34 16 2 C 0.12 2.64 6.39 86.38 0.55 3.19 16 3 N -0.65 -19.51 2.53 -793.77 -2.01 -21.52 16 4 C 0.61 20.98 5.17 86.72 0.45 21.42 16 5 O -0.53 -20.52 17.43 -3.97 -0.07 -20.58 16 6 C -0.20 -6.79 5.22 -20.06 -0.10 -6.89 16 7 C -0.08 -3.15 4.73 22.45 0.11 -3.04 16 8 C -0.17 -6.43 10.05 22.41 0.23 -6.20 16 9 C 0.12 3.93 7.04 22.82 0.16 4.09 16 10 C -0.19 -5.19 6.26 -19.55 -0.12 -5.32 16 11 C -0.02 -0.57 9.71 22.43 0.22 -0.35 16 12 C -0.10 -1.61 7.12 30.74 0.22 -1.39 16 13 C 0.04 0.72 8.00 72.56 0.58 1.30 16 14 O -0.32 -9.45 11.09 -93.59 -1.04 -10.49 16 15 C 0.16 5.22 3.52 46.39 0.16 5.39 16 16 H 0.12 3.54 7.87 -2.39 -0.02 3.52 16 17 C -0.17 -6.08 5.88 31.78 0.19 -5.89 16 18 C 0.18 8.58 4.44 86.73 0.39 8.96 16 19 N -0.61 -30.14 2.96 -700.96 -2.07 -32.21 16 20 C -0.25 -13.61 10.28 84.03 0.86 -12.74 16 21 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 22 C -0.05 -2.81 5.49 84.86 0.47 -2.35 16 23 N -0.94 -54.62 10.31 21.65 0.22 -54.40 16 24 Si 0.97 45.10 29.55 68.60 2.03 47.13 16 25 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 26 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 27 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 28 C 0.09 3.93 5.72 86.86 0.50 4.43 16 29 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 32 H 0.10 1.77 7.86 -2.39 -0.02 1.76 16 33 H 0.07 1.67 7.75 -2.39 -0.02 1.65 16 34 H 0.19 7.97 0.84 -6.39 -0.01 7.96 16 35 H 0.11 4.68 8.06 -2.91 -0.02 4.66 16 36 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 37 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.14 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.09 2.72 8.14 -2.38 -0.02 2.71 16 42 H 0.09 3.21 4.00 -4.51 -0.02 3.19 16 43 H 0.02 1.28 7.38 -2.39 -0.02 1.26 16 44 H 0.02 0.97 7.49 -2.38 -0.02 0.95 16 45 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 46 H 0.03 1.49 4.22 -2.39 -0.01 1.48 16 47 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 Total: -1.00 -69.22 363.38 3.62 -65.60 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: 0.98 Total: 24.20 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: 5.58 Total: 2.27 kcal Atomic # 7 Polarization: -104.26 SS G_CDS: -3.86 Total: -108.13 kcal Atomic # 8 Polarization: -29.96 SS G_CDS: -1.11 Total: -31.07 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -69.22 3.62 -65.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033968760.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.570 kcal (2) G-P(sol) polarization free energy of solvation -69.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds