Wall clock time and date at job start Tue Mar 31 2020 17:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46495 * 109.47550 * 2 1 4 4 C 1.34782 * 119.99959 * 251.84691 * 3 2 1 5 5 O 1.21578 * 119.99781 * 185.23741 * 4 3 2 6 6 C 1.47604 * 119.99800 * 5.24128 * 4 3 2 7 7 C 1.39743 * 120.26922 * 26.71414 * 6 4 3 8 8 C 1.37475 * 120.20555 * 179.84871 * 7 6 4 9 9 C 1.39597 * 120.42522 * 0.09629 * 8 7 6 10 10 C 1.39184 * 119.10196 * 0.15854 * 9 8 7 11 11 C 1.37308 * 120.93503 * 359.35220 * 10 9 8 12 12 C 1.51669 * 106.99241 * 179.44827 * 10 9 8 13 13 C 1.54704 * 101.89734 * 344.47344 * 12 10 9 14 14 O 1.35999 * 129.71414 * 180.59664 * 9 8 7 15 15 C 1.46501 * 120.00122 * 71.84599 * 3 2 1 16 16 H 1.09004 * 110.77854 * 15.84710 * 15 3 2 17 17 C 1.55164 * 110.71875 * 252.61408 * 15 3 2 18 18 C 1.54906 * 101.57974 * 277.13548 * 17 15 3 19 19 N 1.47424 * 104.83326 * 322.99330 * 18 17 15 20 20 C 1.36940 * 125.64402 * 204.16489 * 19 18 17 21 21 H 1.08000 * 119.99739 * 179.97438 * 20 19 18 22 22 C 1.38804 * 120.00415 * 359.95470 * 20 19 18 23 23 N 1.31620 * 119.99836 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00357 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46777 * 60.00049 * 24 22 20 26 26 H 1.48501 * 109.47522 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.46936 * 300.00696 * 24 22 20 28 28 C 1.47013 * 108.70328 * 24.13031 * 19 18 17 29 29 H 1.09000 * 109.46806 * 300.00113 * 1 2 3 30 30 H 1.09000 * 109.47047 * 59.99458 * 1 2 3 31 31 H 1.08992 * 109.47621 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46806 * 239.99887 * 2 1 3 33 33 H 1.09000 * 109.47047 * 120.00542 * 2 1 3 34 34 H 1.08004 * 119.89992 * 359.87377 * 7 6 4 35 35 H 1.07998 * 119.78603 * 180.02562 * 8 7 6 36 36 H 1.08005 * 120.06783 * 180.60592 * 11 10 9 37 37 H 1.09002 * 110.94517 * 226.32278 * 12 10 9 38 38 H 1.09002 * 110.94994 * 102.62911 * 12 10 9 39 39 H 1.08991 * 110.74629 * 267.04346 * 13 12 10 40 40 H 1.08998 * 110.89776 * 143.78158 * 13 12 10 41 41 H 1.08998 * 111.00236 * 159.05884 * 17 15 3 42 42 H 1.09000 * 111.03833 * 35.22619 * 17 15 3 43 43 H 1.09003 * 110.36833 * 204.14978 * 18 17 15 44 44 H 1.09007 * 110.45653 * 81.88092 * 18 17 15 45 45 H 0.97003 * 120.00268 * 179.97438 * 23 22 20 46 46 H 1.09001 * 109.88685 * 118.36400 * 28 19 18 47 47 H 1.09001 * 109.87991 * 239.52314 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.5860 1.8952 -1.1092 5 8 3.0768 3.0072 -1.0813 6 6 2.6115 1.1082 -2.3576 7 6 1.6333 0.1402 -2.6002 8 6 1.6565 -0.5898 -3.7649 9 6 2.6565 -0.3739 -4.7147 10 6 3.6311 0.5878 -4.4650 11 6 3.6113 1.3294 -3.3095 12 6 4.5732 0.5833 -5.6536 13 6 4.2094 -0.7527 -6.3438 14 8 2.8532 -0.9713 -5.9206 15 6 1.8900 2.2035 1.2056 16 1 1.6783 1.5829 2.0763 17 6 0.7900 3.2820 1.0197 18 6 1.5657 4.3906 0.2655 19 7 2.9163 4.3749 0.8564 20 6 3.7943 5.4257 0.8686 21 1 4.7647 5.3133 1.3291 22 6 3.4373 6.6353 0.2888 23 7 2.2546 6.7724 -0.2723 24 14 4.6347 8.0689 0.3060 25 1 5.8791 7.6830 -0.4065 26 1 4.0178 9.2374 -0.3716 27 1 4.9590 8.4261 1.7105 28 6 3.1640 3.0446 1.4310 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 0.8563 -0.0347 -1.8707 35 1 0.8969 -1.3360 -3.9456 36 1 4.3690 2.0789 -3.1345 37 1 5.6130 0.5825 -5.3267 38 1 4.3740 1.4289 -6.3120 39 1 4.8572 -1.5566 -5.9945 40 1 4.2649 -0.6578 -7.4282 41 1 0.4303 3.6432 1.9832 42 1 -0.0333 2.9011 0.4155 43 1 1.0931 5.3599 0.4249 44 1 1.6149 4.1640 -0.7996 45 1 2.0049 7.6178 -0.6772 46 1 4.0111 2.5761 0.9299 47 1 3.3653 3.1336 2.4986 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033968767.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:17 Heat of formation + Delta-G solvation = 50.806399 kcal Electronic energy + Delta-G solvation = -29661.753136 eV Core-core repulsion = 25813.384495 eV Total energy + Delta-G solvation = -3848.368641 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 2.75 seconds Orbital eigenvalues (eV) -41.30277 -40.11872 -37.52096 -36.05123 -35.39973 -32.87110 -32.17468 -30.40815 -30.09269 -29.28454 -28.80672 -27.01550 -24.54717 -23.90649 -23.35664 -22.57900 -21.86123 -20.81720 -19.89315 -18.42290 -17.77253 -17.03289 -16.55532 -16.53701 -16.31024 -15.35432 -15.23142 -14.57941 -14.43412 -14.33748 -13.93262 -13.61361 -13.48767 -13.22762 -13.10934 -12.84220 -12.72720 -12.49055 -12.20350 -11.96653 -11.91239 -11.84967 -11.54109 -11.41087 -11.20485 -10.88266 -10.82699 -10.72033 -10.64501 -10.60350 -9.96234 -9.83022 -9.59674 -9.32943 -8.93662 -8.91822 -8.42965 -8.14244 -7.87421 -6.43999 -5.35900 -2.72003 0.97486 1.27164 3.01851 3.21240 3.37536 3.54763 3.58303 3.59933 3.92793 4.26533 4.41275 4.71171 4.71995 4.76645 4.80213 4.88634 5.09563 5.16035 5.18525 5.23895 5.39916 5.47191 5.53168 5.57585 5.58428 5.64246 5.68790 5.75563 5.78788 5.87819 5.94251 6.05029 6.15535 6.17903 6.28299 6.38083 6.40129 6.45766 6.60913 6.70515 6.82454 6.91085 7.02860 7.31414 7.82965 7.91539 7.99610 8.15324 8.65862 8.91918 9.52166 10.14272 10.81963 11.68020 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.012584 B = 0.004138 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.568667 B = 6765.265751 C = 8450.020877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.083 3.917 3 N -0.605 5.605 4 C 0.525 3.475 5 O -0.442 6.442 6 C -0.144 4.144 7 C -0.083 4.083 8 C -0.149 4.149 9 C 0.117 3.883 10 C -0.184 4.184 11 C -0.014 4.014 12 C -0.109 4.109 13 C 0.052 3.948 14 O -0.305 6.305 15 C 0.137 3.863 16 H 0.082 0.918 17 C -0.160 4.160 18 C 0.159 3.841 19 N -0.577 5.577 20 C -0.200 4.200 21 H 0.069 0.931 22 C -0.015 4.015 23 N -0.922 5.922 24 Si 0.907 3.093 25 H -0.290 1.290 26 H -0.293 1.293 27 H -0.289 1.289 28 C 0.141 3.859 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.099 0.901 33 H 0.068 0.932 34 H 0.161 0.839 35 H 0.130 0.870 36 H 0.136 0.864 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.077 0.923 40 H 0.106 0.894 41 H 0.064 0.936 42 H 0.056 0.944 43 H 0.094 0.906 44 H 0.030 0.970 45 H 0.246 0.754 46 H 0.022 0.978 47 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.828 -20.361 -6.866 21.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.041 4.041 3 N -0.341 5.341 4 C 0.311 3.689 5 O -0.312 6.312 6 C -0.148 4.148 7 C -0.101 4.101 8 C -0.167 4.167 9 C 0.072 3.928 10 C -0.185 4.185 11 C -0.033 4.033 12 C -0.146 4.146 13 C -0.023 4.023 14 O -0.219 6.219 15 C 0.034 3.966 16 H 0.100 0.900 17 C -0.200 4.200 18 C 0.034 3.966 19 N -0.302 5.302 20 C -0.329 4.329 21 H 0.087 0.913 22 C -0.209 4.209 23 N -0.572 5.572 24 Si 0.739 3.261 25 H -0.217 1.217 26 H -0.219 1.219 27 H -0.216 1.216 28 C 0.014 3.986 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.117 0.883 33 H 0.086 0.914 34 H 0.178 0.822 35 H 0.148 0.852 36 H 0.154 0.846 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.095 0.905 40 H 0.124 0.876 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.112 0.888 44 H 0.048 0.952 45 H 0.057 0.943 46 H 0.040 0.960 47 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -1.654 -19.623 -7.070 20.923 hybrid contribution 0.749 0.651 -0.175 1.007 sum -0.905 -18.972 -7.245 20.328 Atomic orbital electron populations 1.22334 0.96236 1.02028 1.03139 1.22150 0.94281 0.83924 1.03698 1.47707 1.61401 1.12514 1.12447 1.18179 0.81094 0.86819 0.82772 1.91229 1.40278 1.16661 1.83020 1.20045 0.98007 0.99705 0.96993 1.21991 0.98595 0.93213 0.96257 1.20174 1.00008 1.04041 0.92520 1.19824 0.95677 0.91731 0.85612 1.20640 1.00220 1.00088 0.97521 1.20384 0.96980 0.95855 0.90071 1.21790 0.99932 0.98366 0.94559 1.23841 0.81001 0.96718 1.00737 1.86775 1.30480 1.73178 1.31488 1.22038 0.97841 0.91598 0.85133 0.90031 1.23537 0.96975 0.98292 1.01156 1.21990 0.83980 0.96376 0.94213 1.44122 1.14364 1.06279 1.65397 1.18925 0.95492 0.88800 1.29669 0.91275 1.24647 0.97258 0.97757 1.01282 1.69818 1.19479 1.24060 1.43889 0.86250 0.80197 0.82408 0.77242 1.21667 1.21863 1.21563 1.21353 0.93968 0.87955 0.95330 0.91449 0.91787 0.91639 0.88341 0.91376 0.82220 0.85171 0.84569 0.88875 0.88974 0.90515 0.87603 0.91778 0.92548 0.88839 0.95219 0.94300 0.96014 0.96383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.69 9.13 37.16 0.34 -1.35 16 2 C 0.08 0.92 5.57 -4.04 -0.02 0.90 16 3 N -0.60 -9.74 2.57 -165.22 -0.42 -10.16 16 4 C 0.53 10.03 6.52 -12.44 -0.08 9.95 16 5 O -0.44 -10.89 10.17 5.30 0.05 -10.84 16 6 C -0.14 -2.29 5.50 -104.93 -0.58 -2.87 16 7 C -0.08 -1.04 7.41 -39.30 -0.29 -1.34 16 8 C -0.15 -1.76 10.05 -39.35 -0.40 -2.15 16 9 C 0.12 1.51 7.04 -38.72 -0.27 1.23 16 10 C -0.18 -2.43 6.26 -104.13 -0.65 -3.08 16 11 C -0.01 -0.22 9.58 -39.33 -0.38 -0.60 16 12 C -0.11 -1.06 7.12 -26.51 -0.19 -1.25 16 13 C 0.05 0.43 8.00 38.05 0.30 0.74 16 14 O -0.31 -3.62 11.09 -19.74 -0.22 -3.84 16 15 C 0.14 2.46 3.39 -66.09 -0.22 2.23 16 16 H 0.08 1.20 8.03 -51.93 -0.42 0.79 16 17 C -0.16 -3.17 6.71 -24.58 -0.16 -3.34 16 18 C 0.16 4.16 4.93 -2.53 -0.01 4.14 16 19 N -0.58 -15.78 2.20 -170.08 -0.37 -16.15 16 20 C -0.20 -5.98 10.27 -15.06 -0.15 -6.14 16 21 H 0.07 2.02 7.83 -52.49 -0.41 1.61 16 22 C -0.01 -0.45 5.49 -17.43 -0.10 -0.55 16 23 N -0.92 -28.79 10.09 55.49 0.56 -28.23 16 24 Si 0.91 23.60 29.55 -169.99 -5.02 18.58 16 25 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 26 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 27 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 28 C 0.14 3.18 5.97 -3.07 -0.02 3.16 16 29 H 0.07 0.68 7.99 -51.93 -0.41 0.27 16 30 H 0.06 0.66 6.81 -51.93 -0.35 0.30 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.10 1.03 4.18 -51.93 -0.22 0.81 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.16 1.71 2.76 -52.48 -0.15 1.56 16 35 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 36 H 0.14 2.27 7.88 -52.48 -0.41 1.86 16 37 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.09 2.77 5.87 -51.93 -0.30 2.46 16 44 H 0.03 0.87 5.66 -51.92 -0.29 0.57 16 45 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 46 H 0.02 0.52 7.04 -51.93 -0.37 0.16 16 47 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 359.63 15.07 5.42 5.42 Total: -1.00 -36.13 359.63 -9.59 -45.73 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -6.70 Total: -0.20 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -2.88 Total: -0.30 kcal Atomic # 7 Polarization: -54.31 SS G_CDS: -0.24 Total: -54.55 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: -0.17 Total: -14.67 kcal Atomic # 14 Polarization: 23.60 SS G_CDS: -5.02 Total: 18.58 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -36.13 -9.59 -45.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033968767.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.532 kcal (2) G-P(sol) polarization free energy of solvation -36.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.75 seconds