Wall clock time and date at job start Tue Mar 31 2020 17:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46495 * 109.47550 * 2 1 4 4 C 1.34782 * 119.99959 * 251.84691 * 3 2 1 5 5 O 1.21578 * 119.99781 * 185.23741 * 4 3 2 6 6 C 1.47604 * 119.99800 * 5.24128 * 4 3 2 7 7 C 1.39743 * 120.26922 * 26.71414 * 6 4 3 8 8 C 1.37475 * 120.20555 * 179.84871 * 7 6 4 9 9 C 1.39597 * 120.42522 * 0.09629 * 8 7 6 10 10 C 1.39184 * 119.10196 * 0.15854 * 9 8 7 11 11 C 1.37308 * 120.93503 * 359.35220 * 10 9 8 12 12 C 1.51669 * 106.99241 * 179.44827 * 10 9 8 13 13 C 1.54704 * 101.89734 * 344.47344 * 12 10 9 14 14 O 1.35999 * 129.71414 * 180.59664 * 9 8 7 15 15 C 1.46501 * 120.00122 * 71.84599 * 3 2 1 16 16 H 1.09004 * 110.77854 * 15.84710 * 15 3 2 17 17 C 1.55164 * 110.71875 * 252.61408 * 15 3 2 18 18 C 1.54906 * 101.57974 * 277.13548 * 17 15 3 19 19 N 1.47424 * 104.83326 * 322.99330 * 18 17 15 20 20 C 1.36940 * 125.64402 * 204.16489 * 19 18 17 21 21 H 1.08000 * 119.99739 * 179.97438 * 20 19 18 22 22 C 1.38804 * 120.00415 * 359.95470 * 20 19 18 23 23 N 1.31620 * 119.99836 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00357 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46777 * 60.00049 * 24 22 20 26 26 H 1.48501 * 109.47522 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.46936 * 300.00696 * 24 22 20 28 28 C 1.47013 * 108.70328 * 24.13031 * 19 18 17 29 29 H 1.09000 * 109.46806 * 300.00113 * 1 2 3 30 30 H 1.09000 * 109.47047 * 59.99458 * 1 2 3 31 31 H 1.08992 * 109.47621 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46806 * 239.99887 * 2 1 3 33 33 H 1.09000 * 109.47047 * 120.00542 * 2 1 3 34 34 H 1.08004 * 119.89992 * 359.87377 * 7 6 4 35 35 H 1.07998 * 119.78603 * 180.02562 * 8 7 6 36 36 H 1.08005 * 120.06783 * 180.60592 * 11 10 9 37 37 H 1.09002 * 110.94517 * 226.32278 * 12 10 9 38 38 H 1.09002 * 110.94994 * 102.62911 * 12 10 9 39 39 H 1.08991 * 110.74629 * 267.04346 * 13 12 10 40 40 H 1.08998 * 110.89776 * 143.78158 * 13 12 10 41 41 H 1.08998 * 111.00236 * 159.05884 * 17 15 3 42 42 H 1.09000 * 111.03833 * 35.22619 * 17 15 3 43 43 H 1.09003 * 110.36833 * 204.14978 * 18 17 15 44 44 H 1.09007 * 110.45653 * 81.88092 * 18 17 15 45 45 H 0.97003 * 120.00268 * 179.97438 * 23 22 20 46 46 H 1.09001 * 109.88685 * 118.36400 * 28 19 18 47 47 H 1.09001 * 109.87991 * 239.52314 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.5860 1.8952 -1.1092 5 8 3.0768 3.0072 -1.0813 6 6 2.6115 1.1082 -2.3576 7 6 1.6333 0.1402 -2.6002 8 6 1.6565 -0.5898 -3.7649 9 6 2.6565 -0.3739 -4.7147 10 6 3.6311 0.5878 -4.4650 11 6 3.6113 1.3294 -3.3095 12 6 4.5732 0.5833 -5.6536 13 6 4.2094 -0.7527 -6.3438 14 8 2.8532 -0.9713 -5.9206 15 6 1.8900 2.2035 1.2056 16 1 1.6783 1.5829 2.0763 17 6 0.7900 3.2820 1.0197 18 6 1.5657 4.3906 0.2655 19 7 2.9163 4.3749 0.8564 20 6 3.7943 5.4257 0.8686 21 1 4.7647 5.3133 1.3291 22 6 3.4373 6.6353 0.2888 23 7 2.2546 6.7724 -0.2723 24 14 4.6347 8.0689 0.3060 25 1 5.8791 7.6830 -0.4065 26 1 4.0178 9.2374 -0.3716 27 1 4.9590 8.4261 1.7105 28 6 3.1640 3.0446 1.4310 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 0.8563 -0.0347 -1.8707 35 1 0.8969 -1.3360 -3.9456 36 1 4.3690 2.0789 -3.1345 37 1 5.6130 0.5825 -5.3267 38 1 4.3740 1.4289 -6.3120 39 1 4.8572 -1.5566 -5.9945 40 1 4.2649 -0.6578 -7.4282 41 1 0.4303 3.6432 1.9832 42 1 -0.0333 2.9011 0.4155 43 1 1.0931 5.3599 0.4249 44 1 1.6149 4.1640 -0.7996 45 1 2.0049 7.6178 -0.6772 46 1 4.0111 2.5761 0.9299 47 1 3.3653 3.1336 2.4986 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033968767.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:15 Heat of formation + Delta-G solvation = 27.756655 kcal Electronic energy + Delta-G solvation = -29662.752648 eV Core-core repulsion = 25813.384495 eV Total energy + Delta-G solvation = -3849.368153 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.30137 -41.42438 -38.80926 -37.56803 -36.78903 -34.30486 -33.63939 -31.60593 -31.43563 -30.60490 -30.15414 -28.73161 -26.49230 -25.17219 -24.25287 -23.54732 -22.81510 -22.27163 -21.89546 -19.78155 -18.84221 -18.65335 -18.05963 -17.62285 -17.17767 -16.97591 -16.55234 -16.29643 -15.79545 -15.58649 -15.50981 -14.96242 -14.77161 -14.37823 -14.13407 -14.07367 -13.82598 -13.65806 -13.50154 -13.39769 -13.23533 -13.15165 -12.85626 -12.77711 -12.67831 -12.53656 -12.22673 -12.10240 -12.03727 -11.86111 -11.81717 -11.66846 -11.43518 -11.23043 -10.70065 -10.33409 -9.95681 -9.40445 -9.15582 -8.62734 -7.63860 -5.01806 -0.11945 0.23404 1.40944 1.46272 1.51893 1.92482 2.08006 2.27305 2.55228 2.73534 3.40104 3.42911 3.54184 3.70204 3.81977 3.88265 3.97765 4.01276 4.12105 4.15436 4.22781 4.30031 4.34972 4.41843 4.48160 4.60950 4.62559 4.75433 4.76662 4.82264 4.84334 4.93887 5.00740 5.02055 5.05608 5.07873 5.15812 5.21298 5.25240 5.31529 5.39983 5.49062 5.50838 5.87662 5.89618 5.99459 6.08634 6.44664 6.61923 7.24617 7.52344 7.97159 8.62173 9.37601 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.012584 B = 0.004138 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.568667 B = 6765.265751 C = 8450.020877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.075 3.925 3 N -0.599 5.599 4 C 0.520 3.480 5 O -0.516 6.516 6 C -0.169 4.169 7 C -0.069 4.069 8 C -0.143 4.143 9 C 0.117 3.883 10 C -0.194 4.194 11 C -0.037 4.037 12 C -0.113 4.113 13 C 0.052 3.948 14 O -0.313 6.313 15 C 0.151 3.849 16 H 0.132 0.868 17 C -0.143 4.143 18 C 0.166 3.834 19 N -0.594 5.594 20 C -0.218 4.218 21 H 0.067 0.933 22 C -0.074 4.074 23 N -0.949 5.949 24 Si 0.974 3.026 25 H -0.288 1.288 26 H -0.293 1.293 27 H -0.274 1.274 28 C 0.136 3.864 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.093 0.907 34 H 0.184 0.816 35 H 0.165 0.835 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.135 0.865 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.052 0.948 44 H -0.006 1.006 45 H 0.239 0.761 46 H 0.001 0.999 47 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.871 -24.005 -6.916 25.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.046 4.046 3 N -0.333 5.333 4 C 0.309 3.691 5 O -0.391 6.391 6 C -0.172 4.172 7 C -0.087 4.087 8 C -0.161 4.161 9 C 0.071 3.929 10 C -0.195 4.195 11 C -0.057 4.057 12 C -0.150 4.150 13 C -0.021 4.021 14 O -0.226 6.226 15 C 0.048 3.952 16 H 0.150 0.850 17 C -0.182 4.182 18 C 0.041 3.959 19 N -0.318 5.318 20 C -0.348 4.348 21 H 0.085 0.915 22 C -0.265 4.265 23 N -0.601 5.601 24 Si 0.803 3.197 25 H -0.215 1.215 26 H -0.219 1.219 27 H -0.199 1.199 28 C 0.010 3.990 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.120 0.880 32 H 0.125 0.875 33 H 0.112 0.888 34 H 0.201 0.799 35 H 0.183 0.817 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.153 0.847 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.070 0.930 44 H 0.012 0.988 45 H 0.048 0.952 46 H 0.019 0.981 47 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -2.710 -23.353 -7.095 24.557 hybrid contribution 1.136 1.660 -0.252 2.027 sum -1.573 -21.693 -7.347 22.957 Atomic orbital electron populations 1.22318 0.94257 1.04224 1.02580 1.22526 0.95770 0.80846 1.05427 1.47821 1.60365 1.14236 1.10905 1.18766 0.79872 0.86171 0.84305 1.91193 1.43751 1.19816 1.84338 1.19902 0.99906 1.01365 0.96059 1.22157 0.97683 0.91736 0.97105 1.20552 1.00097 1.03947 0.91500 1.20083 0.95425 0.91268 0.86100 1.20908 1.01462 0.99646 0.97456 1.20274 0.97176 0.96450 0.91760 1.21931 0.99988 0.99655 0.93383 1.24141 0.79591 0.96100 1.02312 1.86767 1.32388 1.72800 1.30681 1.21952 0.94098 0.91637 0.87549 0.85025 1.23341 0.97275 0.96626 1.00968 1.21658 0.84347 0.96571 0.93344 1.44357 1.14545 1.07549 1.65358 1.19295 0.96010 0.90082 1.29369 0.91522 1.25486 0.99117 1.00417 1.01528 1.70131 1.21124 1.24030 1.44781 0.85209 0.77858 0.78896 0.77745 1.21524 1.21940 1.19947 1.21522 0.95940 0.86652 0.94921 0.91620 0.92763 0.88047 0.87528 0.88847 0.79936 0.81724 0.87629 0.87718 0.88814 0.88606 0.84720 0.90560 0.90456 0.93032 0.98834 0.95169 0.98104 0.95402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.52 9.13 71.98 0.66 -1.86 16 2 C 0.08 1.41 5.57 86.38 0.48 1.89 16 3 N -0.60 -18.65 2.57 -794.89 -2.04 -20.69 16 4 C 0.52 20.70 6.52 86.71 0.57 21.26 16 5 O -0.52 -27.44 10.17 -3.96 -0.04 -27.48 16 6 C -0.17 -5.52 5.50 -20.06 -0.11 -5.63 16 7 C -0.07 -1.62 7.41 22.45 0.17 -1.45 16 8 C -0.14 -2.96 10.05 22.42 0.23 -2.73 16 9 C 0.12 2.79 7.04 22.83 0.16 2.95 16 10 C -0.19 -5.14 6.26 -19.55 -0.12 -5.26 16 11 C -0.04 -1.25 9.58 22.43 0.21 -1.03 16 12 C -0.11 -2.09 7.12 30.74 0.22 -1.88 16 13 C 0.05 0.73 8.00 72.56 0.58 1.31 16 14 O -0.31 -6.52 11.09 -93.54 -1.04 -7.56 16 15 C 0.15 5.20 3.39 46.18 0.16 5.35 16 16 H 0.13 3.30 8.03 -2.39 -0.02 3.28 16 17 C -0.14 -5.57 6.71 31.99 0.21 -5.36 16 18 C 0.17 9.12 4.93 86.85 0.43 9.55 16 19 N -0.59 -34.06 2.20 -692.02 -1.53 -35.59 16 20 C -0.22 -13.68 10.27 84.03 0.86 -12.82 16 21 H 0.07 4.08 7.83 -2.91 -0.02 4.05 16 22 C -0.07 -4.66 5.49 84.86 0.47 -4.20 16 23 N -0.95 -62.69 10.09 21.65 0.22 -62.47 16 24 Si 0.97 50.58 29.55 68.60 2.03 52.61 16 25 H -0.29 -14.77 7.11 99.48 0.71 -14.06 16 26 H -0.29 -15.13 7.11 99.48 0.71 -14.42 16 27 H -0.27 -13.42 7.11 99.48 0.71 -12.71 16 28 C 0.14 6.25 5.97 86.73 0.52 6.77 16 29 H 0.06 1.01 7.99 -2.39 -0.02 0.99 16 30 H 0.05 0.91 6.81 -2.39 -0.02 0.89 16 31 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.11 1.87 4.18 -2.39 -0.01 1.86 16 33 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.18 3.31 2.76 -2.91 -0.01 3.30 16 35 H 0.17 2.29 8.06 -2.91 -0.02 2.26 16 36 H 0.11 4.03 7.88 -2.91 -0.02 4.01 16 37 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 42 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 43 H 0.05 3.25 5.87 -2.39 -0.01 3.23 16 44 H -0.01 -0.37 5.66 -2.38 -0.01 -0.39 16 45 H 0.24 15.35 8.31 -92.71 -0.77 14.58 16 46 H 0.00 0.05 7.04 -2.39 -0.02 0.04 16 47 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -87.53 359.63 4.27 -83.26 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: 0.99 Total: 11.06 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: 5.68 Total: 6.86 kcal Atomic # 7 Polarization: -115.40 SS G_CDS: -3.35 Total: -118.75 kcal Atomic # 8 Polarization: -33.97 SS G_CDS: -1.08 Total: -35.04 kcal Atomic # 14 Polarization: 50.58 SS G_CDS: 2.03 Total: 52.61 kcal Total: -87.53 4.27 -83.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033968767.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.018 kcal (2) G-P(sol) polarization free energy of solvation -87.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds