Wall clock time and date at job start Tue Mar 31 2020 17:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46510 * 109.46665 * 2 1 4 4 C 1.34777 * 119.99719 * 251.78510 * 3 2 1 5 5 O 1.21549 * 120.00297 * 185.23678 * 4 3 2 6 6 C 1.47854 * 119.99883 * 5.22973 * 4 3 2 7 7 C 1.39600 * 120.12940 * 26.65328 * 6 4 3 8 8 C 1.38003 * 119.88865 * 179.97438 * 7 6 4 9 9 C 1.38135 * 120.11140 * 0.02562 * 8 7 6 10 10 C 1.38752 * 120.27325 * 359.97438 * 9 8 7 11 11 C 1.37709 * 120.18649 * 359.74096 * 10 9 8 12 12 C 1.51113 * 107.25997 * 180.02562 * 10 9 8 13 13 O 1.43929 * 105.94882 * 342.27883 * 12 10 9 14 14 C 1.43927 * 104.97615 * 28.51915 * 13 12 10 15 15 C 1.46494 * 120.00304 * 71.78707 * 3 2 1 16 16 H 1.09002 * 110.77974 * 15.84574 * 15 3 2 17 17 C 1.55161 * 110.71808 * 252.61162 * 15 3 2 18 18 C 1.54917 * 101.57837 * 277.13482 * 17 15 3 19 19 N 1.47425 * 104.83299 * 322.99151 * 18 17 15 20 20 C 1.36935 * 125.64759 * 204.16199 * 19 18 17 21 21 H 1.08003 * 119.99853 * 179.97438 * 20 19 18 22 22 C 1.38813 * 120.00132 * 359.95945 * 20 19 18 23 23 N 1.31615 * 119.99754 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 120.00024 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.47127 * 90.00035 * 24 22 20 26 26 H 1.48493 * 109.47591 * 209.99891 * 24 22 20 27 27 H 1.48500 * 109.47214 * 330.00338 * 24 22 20 28 28 C 1.47026 * 108.70235 * 24.13063 * 19 18 17 29 29 H 1.08999 * 109.46347 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47034 * 300.00079 * 1 2 3 31 31 H 1.08997 * 109.47482 * 60.00360 * 1 2 3 32 32 H 1.08993 * 109.47443 * 240.00247 * 2 1 3 33 33 H 1.09002 * 109.47275 * 119.99227 * 2 1 3 34 34 H 1.07995 * 120.05512 * 359.97438 * 7 6 4 35 35 H 1.07995 * 119.94266 * 179.97438 * 8 7 6 36 36 H 1.07993 * 120.10395 * 180.25885 * 11 10 9 37 37 H 1.09001 * 110.15478 * 223.16114 * 12 10 9 38 38 H 1.08993 * 110.21585 * 101.43298 * 12 10 9 39 39 H 1.08997 * 110.15353 * 212.35503 * 14 13 12 40 40 H 1.08990 * 110.15459 * 90.59836 * 14 13 12 41 41 H 1.09003 * 111.00576 * 159.06679 * 17 15 3 42 42 H 1.09001 * 111.04085 * 35.22374 * 17 15 3 43 43 H 1.08995 * 110.36734 * 204.15151 * 18 17 15 44 44 H 1.09003 * 110.45753 * 81.87428 * 18 17 15 45 45 H 0.97004 * 119.99878 * 180.02562 * 23 22 20 46 46 H 1.08991 * 109.88520 * 118.35700 * 28 19 18 47 47 H 1.09006 * 109.87739 * 239.52633 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3814 0.0000 4 6 2.5868 1.8951 -1.1088 5 8 3.0774 3.0068 -1.0809 6 6 2.6140 1.1062 -2.3589 7 6 1.6366 0.1386 -2.5983 8 6 1.6665 -0.5945 -3.7672 9 6 2.6615 -0.3726 -4.6992 10 6 3.6358 0.5877 -4.4671 11 6 3.6139 1.3300 -3.3074 12 6 4.5625 0.5839 -5.6607 13 8 4.3278 -0.6633 -6.3396 14 6 2.9594 -0.9964 -6.0432 15 6 1.8886 2.2042 1.2051 16 1 1.6761 1.5838 2.0759 17 6 0.7887 3.2824 1.0178 18 6 1.5651 4.3909 0.2639 19 7 2.9151 4.3756 0.8561 20 6 3.7930 5.4264 0.8688 21 1 4.7629 5.3141 1.3304 22 6 3.4364 6.6358 0.2882 23 7 2.2543 6.7726 -0.2741 24 14 4.6337 8.0694 0.3061 25 1 5.4836 8.0198 -0.9108 26 1 3.8765 9.3465 0.3292 27 1 5.4932 7.9815 1.5139 28 6 3.1623 3.0454 1.4316 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.8934 -0.5137 -0.8899 33 1 1.8934 -0.5137 0.8901 34 1 0.8585 -0.0360 -1.8701 35 1 0.9110 -1.3436 -3.9531 36 1 4.3705 2.0800 -3.1300 37 1 5.5998 0.6428 -5.3311 38 1 4.3304 1.4200 -6.3203 39 1 2.8393 -2.0785 -5.9899 40 1 2.2986 -0.5817 -6.8044 41 1 0.4280 3.6440 1.9807 42 1 -0.0341 2.9012 0.4128 43 1 1.0923 5.3601 0.4224 44 1 1.6155 4.1638 -0.8010 45 1 2.0053 7.6176 -0.6802 46 1 4.0098 2.5768 0.9314 47 1 3.3624 3.1348 2.4994 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033986374.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:29 Heat of formation + Delta-G solvation = 45.903563 kcal Electronic energy + Delta-G solvation = -29630.727523 eV Core-core repulsion = 25782.146280 eV Total energy + Delta-G solvation = -3848.581244 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -41.04896 -39.96978 -37.52876 -36.15741 -35.50314 -32.43712 -31.69849 -31.20246 -30.25524 -28.93246 -28.05913 -27.15204 -25.30030 -24.23160 -23.35849 -22.25906 -21.85610 -20.83125 -19.93121 -18.48077 -17.10875 -16.86877 -16.60186 -16.53599 -16.19486 -15.41237 -15.28365 -14.68938 -14.43594 -14.38246 -14.12764 -13.68408 -13.54819 -13.38072 -13.09466 -12.94741 -12.71918 -12.59754 -12.27319 -11.94064 -11.93573 -11.78125 -11.45112 -11.42635 -11.17411 -10.92841 -10.84663 -10.71725 -10.67779 -10.22994 -9.96277 -9.89066 -9.63738 -9.36679 -9.03946 -8.96307 -8.57888 -8.46756 -7.93451 -6.47705 -5.39225 -2.75344 0.80986 1.19122 3.06816 3.26825 3.52850 3.57236 3.58842 3.70275 3.83714 4.03766 4.43200 4.64224 4.69651 4.77465 4.84279 5.07464 5.10850 5.12113 5.19230 5.22721 5.33629 5.37069 5.45860 5.53244 5.59206 5.62170 5.66163 5.71500 5.74074 5.83459 5.86738 6.00804 6.09824 6.12377 6.16083 6.29786 6.36219 6.47996 6.55929 6.65601 6.71245 6.78700 6.86932 7.25442 7.79654 7.84184 7.94604 8.11151 8.62126 8.82571 9.48918 10.10901 10.78272 11.64840 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.012418 B = 0.004137 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.291078 B = 6767.353808 C = 8482.929210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.082 3.918 3 N -0.603 5.603 4 C 0.521 3.479 5 O -0.438 6.438 6 C -0.109 4.109 7 C -0.113 4.113 8 C -0.105 4.105 9 C -0.122 4.122 10 C -0.140 4.140 11 C -0.039 4.039 12 C 0.092 3.908 13 O -0.363 6.363 14 C 0.091 3.909 15 C 0.137 3.863 16 H 0.082 0.918 17 C -0.160 4.160 18 C 0.159 3.841 19 N -0.577 5.577 20 C -0.200 4.200 21 H 0.070 0.930 22 C -0.015 4.015 23 N -0.922 5.922 24 Si 0.907 3.093 25 H -0.293 1.293 26 H -0.293 1.293 27 H -0.284 1.284 28 C 0.141 3.859 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.099 0.901 33 H 0.069 0.931 34 H 0.159 0.841 35 H 0.128 0.872 36 H 0.138 0.862 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.097 0.903 40 H 0.078 0.922 41 H 0.064 0.936 42 H 0.056 0.944 43 H 0.095 0.905 44 H 0.029 0.971 45 H 0.246 0.754 46 H 0.022 0.978 47 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.412 -20.078 -6.069 21.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.041 4.041 3 N -0.339 5.339 4 C 0.306 3.694 5 O -0.307 6.307 6 C -0.112 4.112 7 C -0.131 4.131 8 C -0.123 4.123 9 C -0.122 4.122 10 C -0.141 4.141 11 C -0.058 4.058 12 C 0.016 3.984 13 O -0.281 6.281 14 C 0.015 3.985 15 C 0.034 3.966 16 H 0.101 0.899 17 C -0.200 4.200 18 C 0.034 3.966 19 N -0.302 5.302 20 C -0.329 4.329 21 H 0.088 0.912 22 C -0.210 4.210 23 N -0.572 5.572 24 Si 0.739 3.261 25 H -0.221 1.221 26 H -0.220 1.220 27 H -0.210 1.210 28 C 0.013 3.987 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.117 0.883 33 H 0.087 0.913 34 H 0.176 0.824 35 H 0.146 0.854 36 H 0.155 0.845 37 H 0.117 0.883 38 H 0.098 0.902 39 H 0.115 0.885 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.074 0.926 43 H 0.112 0.888 44 H 0.047 0.953 45 H 0.057 0.943 46 H 0.040 0.960 47 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -3.932 -19.330 -6.243 20.691 hybrid contribution 0.365 0.715 0.030 0.804 sum -3.567 -18.615 -6.214 19.946 Atomic orbital electron populations 1.22327 0.96169 1.02035 1.03135 1.22175 0.94337 0.83852 1.03766 1.47709 1.61207 1.12555 1.12465 1.18280 0.81309 0.86909 0.82862 1.91233 1.40007 1.16613 1.82884 1.20194 0.96893 0.97817 0.96292 1.22254 0.99175 0.94279 0.97352 1.20315 0.98140 1.00866 0.92954 1.21215 0.96289 0.98091 0.96621 1.20923 0.98601 0.98075 0.96455 1.20484 0.97667 0.97060 0.90548 1.21759 0.99360 0.87249 0.90045 1.89065 1.27731 1.39112 1.72211 1.21767 0.84013 1.00666 0.92095 1.22056 0.97905 0.91608 0.85080 0.89949 1.23543 0.96946 0.98251 1.01209 1.21992 0.84023 0.96421 0.94129 1.44139 1.14417 1.06318 1.65319 1.18977 0.95524 0.88773 1.29611 0.91181 1.24652 0.97266 0.97778 1.01257 1.69825 1.19502 1.24064 1.43852 0.86161 0.80028 0.82439 0.77452 1.22059 1.21981 1.21008 1.21362 0.93925 0.87950 0.95419 0.91624 0.91424 0.91822 0.88325 0.91314 0.82437 0.85404 0.84459 0.88262 0.90236 0.88497 0.90434 0.91702 0.92558 0.88778 0.95300 0.94327 0.96000 0.96282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.61 9.12 37.16 0.34 -1.27 16 2 C 0.08 0.88 5.57 -4.04 -0.02 0.86 16 3 N -0.60 -9.52 2.57 -165.12 -0.42 -9.95 16 4 C 0.52 9.75 6.52 -12.32 -0.08 9.67 16 5 O -0.44 -10.63 10.16 5.32 0.05 -10.58 16 6 C -0.11 -1.68 5.51 -104.94 -0.58 -2.25 16 7 C -0.11 -1.34 7.43 -39.16 -0.29 -1.63 16 8 C -0.10 -1.08 10.03 -39.71 -0.40 -1.47 16 9 C -0.12 -1.37 6.33 -104.25 -0.66 -2.03 16 10 C -0.14 -1.81 6.31 -104.42 -0.66 -2.47 16 11 C -0.04 -0.59 9.59 -39.26 -0.38 -0.97 16 12 C 0.09 1.02 7.63 36.21 0.28 1.30 16 13 O -0.36 -4.21 11.72 -35.23 -0.41 -4.62 16 14 C 0.09 0.85 7.63 36.22 0.28 1.13 16 15 C 0.14 2.41 3.38 -66.10 -0.22 2.19 16 16 H 0.08 1.19 8.03 -51.93 -0.42 0.77 16 17 C -0.16 -3.12 6.71 -24.58 -0.16 -3.29 16 18 C 0.16 4.11 4.93 -2.52 -0.01 4.09 16 19 N -0.58 -15.64 2.21 -170.07 -0.38 -16.01 16 20 C -0.20 -5.94 10.27 -15.06 -0.15 -6.09 16 21 H 0.07 2.04 7.83 -52.48 -0.41 1.63 16 22 C -0.02 -0.45 5.49 -17.43 -0.10 -0.55 16 23 N -0.92 -28.58 10.09 55.49 0.56 -28.02 16 24 Si 0.91 23.49 29.55 -169.99 -5.02 18.46 16 25 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 26 H -0.29 -7.59 7.11 56.52 0.40 -7.18 16 27 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 28 C 0.14 3.13 5.98 -3.06 -0.02 3.11 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.66 7.99 -51.93 -0.41 0.25 16 31 H 0.06 0.62 6.81 -51.93 -0.35 0.27 16 32 H 0.10 1.00 4.17 -51.93 -0.22 0.78 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.16 1.59 2.77 -52.49 -0.15 1.44 16 35 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 36 H 0.14 2.24 7.87 -52.49 -0.41 1.83 16 37 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.09 2.76 5.87 -51.93 -0.30 2.45 16 44 H 0.03 0.83 5.66 -51.93 -0.29 0.54 16 45 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 46 H 0.02 0.52 7.04 -51.93 -0.37 0.16 16 47 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 359.72 15.07 5.42 5.42 Total: -1.00 -35.65 359.72 -9.74 -45.39 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -6.70 Total: -0.42 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: -2.84 Total: 0.33 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: -0.24 Total: -53.98 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: -0.36 Total: -15.20 kcal Atomic # 14 Polarization: 23.49 SS G_CDS: -5.02 Total: 18.46 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.65 -9.74 -45.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033986374.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.294 kcal (2) G-P(sol) polarization free energy of solvation -35.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds