Wall clock time and date at job start Tue Mar 31 2020 17:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46510 * 109.46665 * 2 1 4 4 C 1.34777 * 119.99719 * 251.78510 * 3 2 1 5 5 O 1.21549 * 120.00297 * 185.23678 * 4 3 2 6 6 C 1.47854 * 119.99883 * 5.22973 * 4 3 2 7 7 C 1.39600 * 120.12940 * 26.65328 * 6 4 3 8 8 C 1.38003 * 119.88865 * 179.97438 * 7 6 4 9 9 C 1.38135 * 120.11140 * 0.02562 * 8 7 6 10 10 C 1.38752 * 120.27325 * 359.97438 * 9 8 7 11 11 C 1.37709 * 120.18649 * 359.74096 * 10 9 8 12 12 C 1.51113 * 107.25997 * 180.02562 * 10 9 8 13 13 O 1.43929 * 105.94882 * 342.27883 * 12 10 9 14 14 C 1.43927 * 104.97615 * 28.51915 * 13 12 10 15 15 C 1.46494 * 120.00304 * 71.78707 * 3 2 1 16 16 H 1.09002 * 110.77974 * 15.84574 * 15 3 2 17 17 C 1.55161 * 110.71808 * 252.61162 * 15 3 2 18 18 C 1.54917 * 101.57837 * 277.13482 * 17 15 3 19 19 N 1.47425 * 104.83299 * 322.99151 * 18 17 15 20 20 C 1.36935 * 125.64759 * 204.16199 * 19 18 17 21 21 H 1.08003 * 119.99853 * 179.97438 * 20 19 18 22 22 C 1.38813 * 120.00132 * 359.95945 * 20 19 18 23 23 N 1.31615 * 119.99754 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 120.00024 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.47127 * 90.00035 * 24 22 20 26 26 H 1.48493 * 109.47591 * 209.99891 * 24 22 20 27 27 H 1.48500 * 109.47214 * 330.00338 * 24 22 20 28 28 C 1.47026 * 108.70235 * 24.13063 * 19 18 17 29 29 H 1.08999 * 109.46347 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47034 * 300.00079 * 1 2 3 31 31 H 1.08997 * 109.47482 * 60.00360 * 1 2 3 32 32 H 1.08993 * 109.47443 * 240.00247 * 2 1 3 33 33 H 1.09002 * 109.47275 * 119.99227 * 2 1 3 34 34 H 1.07995 * 120.05512 * 359.97438 * 7 6 4 35 35 H 1.07995 * 119.94266 * 179.97438 * 8 7 6 36 36 H 1.07993 * 120.10395 * 180.25885 * 11 10 9 37 37 H 1.09001 * 110.15478 * 223.16114 * 12 10 9 38 38 H 1.08993 * 110.21585 * 101.43298 * 12 10 9 39 39 H 1.08997 * 110.15353 * 212.35503 * 14 13 12 40 40 H 1.08990 * 110.15459 * 90.59836 * 14 13 12 41 41 H 1.09003 * 111.00576 * 159.06679 * 17 15 3 42 42 H 1.09001 * 111.04085 * 35.22374 * 17 15 3 43 43 H 1.08995 * 110.36734 * 204.15151 * 18 17 15 44 44 H 1.09003 * 110.45753 * 81.87428 * 18 17 15 45 45 H 0.97004 * 119.99878 * 180.02562 * 23 22 20 46 46 H 1.08991 * 109.88520 * 118.35700 * 28 19 18 47 47 H 1.09006 * 109.87739 * 239.52633 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3814 0.0000 4 6 2.5868 1.8951 -1.1088 5 8 3.0774 3.0068 -1.0809 6 6 2.6140 1.1062 -2.3589 7 6 1.6366 0.1386 -2.5983 8 6 1.6665 -0.5945 -3.7672 9 6 2.6615 -0.3726 -4.6992 10 6 3.6358 0.5877 -4.4671 11 6 3.6139 1.3300 -3.3074 12 6 4.5625 0.5839 -5.6607 13 8 4.3278 -0.6633 -6.3396 14 6 2.9594 -0.9964 -6.0432 15 6 1.8886 2.2042 1.2051 16 1 1.6761 1.5838 2.0759 17 6 0.7887 3.2824 1.0178 18 6 1.5651 4.3909 0.2639 19 7 2.9151 4.3756 0.8561 20 6 3.7930 5.4264 0.8688 21 1 4.7629 5.3141 1.3304 22 6 3.4364 6.6358 0.2882 23 7 2.2543 6.7726 -0.2741 24 14 4.6337 8.0694 0.3061 25 1 5.4836 8.0198 -0.9108 26 1 3.8765 9.3465 0.3292 27 1 5.4932 7.9815 1.5139 28 6 3.1623 3.0454 1.4316 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.8934 -0.5137 -0.8899 33 1 1.8934 -0.5137 0.8901 34 1 0.8585 -0.0360 -1.8701 35 1 0.9110 -1.3436 -3.9531 36 1 4.3705 2.0800 -3.1300 37 1 5.5998 0.6428 -5.3311 38 1 4.3304 1.4200 -6.3203 39 1 2.8393 -2.0785 -5.9899 40 1 2.2986 -0.5817 -6.8044 41 1 0.4280 3.6440 1.9807 42 1 -0.0341 2.9012 0.4128 43 1 1.0923 5.3601 0.4224 44 1 1.6155 4.1638 -0.8010 45 1 2.0053 7.6176 -0.6802 46 1 4.0098 2.5768 0.9314 47 1 3.3624 3.1348 2.4994 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033986374.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:26 Heat of formation + Delta-G solvation = 22.652179 kcal Electronic energy + Delta-G solvation = -29631.735779 eV Core-core repulsion = 25782.146280 eV Total energy + Delta-G solvation = -3849.589499 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 2.28 seconds Orbital eigenvalues (eV) -42.12661 -41.16813 -38.73859 -37.64638 -36.85065 -34.31944 -32.67584 -32.40615 -31.44060 -30.75259 -29.08688 -28.68328 -26.72079 -25.98397 -24.29321 -23.26689 -22.80823 -22.21005 -21.90048 -19.81579 -18.82017 -18.11799 -17.80018 -17.55227 -17.15006 -16.98930 -16.51118 -16.34476 -15.87389 -15.60486 -15.41968 -15.11459 -14.87267 -14.45930 -14.27095 -14.08867 -13.72981 -13.71241 -13.53087 -13.38588 -13.30474 -13.15727 -12.87322 -12.84063 -12.72666 -12.37770 -12.21394 -12.07730 -12.00937 -11.95708 -11.71748 -11.57935 -11.32029 -11.04785 -10.73025 -10.37780 -9.97581 -9.56486 -9.40959 -8.64892 -7.65879 -5.03750 -0.21906 0.21294 1.40304 1.44279 1.52001 1.89305 2.04042 2.53727 2.69027 2.88756 3.13106 3.40676 3.54645 3.60204 3.84887 3.86228 3.95174 3.99871 4.18549 4.22763 4.31584 4.33047 4.38895 4.40340 4.41852 4.53534 4.60036 4.70515 4.72527 4.74619 4.81797 4.89777 4.95879 4.98874 5.04468 5.06319 5.17404 5.19111 5.20410 5.27926 5.46392 5.48748 5.61265 5.76808 5.85192 5.87504 5.96989 6.42889 6.56881 7.22963 7.46383 7.95131 8.59900 9.35780 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.012418 B = 0.004137 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.291078 B = 6767.353808 C = 8482.929210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.074 3.926 3 N -0.598 5.598 4 C 0.515 3.485 5 O -0.513 6.513 6 C -0.135 4.135 7 C -0.102 4.102 8 C -0.092 4.092 9 C -0.116 4.116 10 C -0.154 4.154 11 C -0.064 4.064 12 C 0.092 3.908 13 O -0.376 6.376 14 C 0.089 3.911 15 C 0.151 3.849 16 H 0.133 0.867 17 C -0.142 4.142 18 C 0.166 3.834 19 N -0.594 5.594 20 C -0.217 4.217 21 H 0.067 0.933 22 C -0.074 4.074 23 N -0.949 5.949 24 Si 0.973 3.027 25 H -0.297 1.297 26 H -0.291 1.291 27 H -0.269 1.269 28 C 0.135 3.865 29 H 0.102 0.898 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.108 0.892 33 H 0.092 0.908 34 H 0.181 0.819 35 H 0.175 0.825 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.086 0.914 39 H 0.127 0.873 40 H 0.097 0.903 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.052 0.948 44 H -0.006 1.006 45 H 0.239 0.761 46 H 0.000 1.000 47 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.275 -24.050 -6.045 25.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.047 4.047 3 N -0.332 5.332 4 C 0.303 3.697 5 O -0.388 6.388 6 C -0.138 4.138 7 C -0.119 4.119 8 C -0.109 4.109 9 C -0.116 4.116 10 C -0.154 4.154 11 C -0.083 4.083 12 C 0.016 3.984 13 O -0.294 6.294 14 C 0.013 3.987 15 C 0.047 3.953 16 H 0.150 0.850 17 C -0.182 4.182 18 C 0.041 3.959 19 N -0.318 5.318 20 C -0.347 4.347 21 H 0.085 0.915 22 C -0.265 4.265 23 N -0.600 5.600 24 Si 0.802 3.198 25 H -0.225 1.225 26 H -0.217 1.217 27 H -0.193 1.193 28 C 0.009 3.991 29 H 0.120 0.880 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.126 0.874 33 H 0.110 0.890 34 H 0.198 0.802 35 H 0.193 0.807 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.104 0.896 39 H 0.145 0.855 40 H 0.114 0.886 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.070 0.930 44 H 0.012 0.988 45 H 0.049 0.951 46 H 0.018 0.982 47 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -5.815 -23.387 -6.190 24.881 hybrid contribution 0.974 1.815 -0.050 2.061 sum -4.840 -21.571 -6.240 22.972 Atomic orbital electron populations 1.22308 0.94088 1.04269 1.02594 1.22558 0.95898 0.80739 1.05458 1.47830 1.60172 1.14285 1.10908 1.18905 0.80031 0.86284 0.84445 1.91197 1.43509 1.19845 1.84243 1.20028 0.98903 0.99667 0.95229 1.22483 0.98114 0.92785 0.98525 1.20790 0.98227 1.00605 0.91326 1.21655 0.95487 0.96880 0.97590 1.21066 0.99983 0.98346 0.96048 1.20340 0.97953 0.97723 0.92315 1.21784 0.99362 0.87655 0.89608 1.89051 1.29233 1.38941 1.72216 1.22048 0.83154 1.02383 0.91109 1.21963 0.94125 0.91654 0.87529 0.84984 1.23343 0.97240 0.96556 1.01017 1.21663 0.84340 0.96625 0.93303 1.44371 1.14622 1.07565 1.65287 1.19329 0.96009 0.90066 1.29270 0.91529 1.25477 0.99106 1.00393 1.01529 1.70129 1.21106 1.24065 1.44743 0.85140 0.78003 0.79068 0.77570 1.22457 1.21692 1.19343 1.21531 0.95929 0.86671 0.94970 0.87967 0.91705 0.92667 0.87431 0.88952 0.80195 0.80737 0.87819 0.87967 0.89586 0.85547 0.88560 0.90515 0.90376 0.92982 0.98848 0.95139 0.98161 0.95359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 9.12 71.98 0.66 -1.65 16 2 C 0.07 1.32 5.57 86.38 0.48 1.80 16 3 N -0.60 -18.18 2.57 -794.60 -2.04 -20.22 16 4 C 0.52 20.12 6.52 86.79 0.57 20.68 16 5 O -0.51 -27.02 10.16 -3.87 -0.04 -27.06 16 6 C -0.14 -4.26 5.51 -20.07 -0.11 -4.37 16 7 C -0.10 -2.15 7.43 22.54 0.17 -1.99 16 8 C -0.09 -1.51 10.03 22.19 0.22 -1.29 16 9 C -0.12 -2.29 6.33 -19.63 -0.12 -2.42 16 10 C -0.15 -4.00 6.31 -19.74 -0.12 -4.12 16 11 C -0.06 -2.10 9.59 22.48 0.22 -1.89 16 12 C 0.09 2.04 7.63 71.37 0.54 2.59 16 13 O -0.38 -8.00 11.72 -148.98 -1.75 -9.75 16 14 C 0.09 1.35 7.63 71.37 0.54 1.89 16 15 C 0.15 5.10 3.38 46.18 0.16 5.26 16 16 H 0.13 3.24 8.03 -2.39 -0.02 3.22 16 17 C -0.14 -5.46 6.71 31.99 0.21 -5.24 16 18 C 0.17 9.02 4.93 86.86 0.43 9.45 16 19 N -0.59 -33.86 2.21 -691.97 -1.53 -35.38 16 20 C -0.22 -13.57 10.27 84.03 0.86 -12.71 16 21 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 22 C -0.07 -4.62 5.49 84.86 0.47 -4.15 16 23 N -0.95 -62.32 10.09 21.65 0.22 -62.10 16 24 Si 0.97 50.47 29.55 68.60 2.03 52.50 16 25 H -0.30 -15.45 7.11 99.48 0.71 -14.75 16 26 H -0.29 -14.82 7.11 99.48 0.71 -14.11 16 27 H -0.27 -13.10 7.11 99.48 0.71 -12.39 16 28 C 0.14 6.17 5.98 86.73 0.52 6.69 16 29 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.06 0.94 7.99 -2.39 -0.02 0.92 16 31 H 0.05 0.85 6.81 -2.39 -0.02 0.83 16 32 H 0.11 1.77 4.17 -2.39 -0.01 1.76 16 33 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.18 2.91 2.77 -2.91 -0.01 2.91 16 35 H 0.18 1.30 8.06 -2.91 -0.02 1.28 16 36 H 0.10 3.94 7.87 -2.91 -0.02 3.92 16 37 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 42 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 43 H 0.05 3.25 5.87 -2.39 -0.01 3.24 16 44 H -0.01 -0.38 5.66 -2.39 -0.01 -0.39 16 45 H 0.24 15.25 8.31 -92.71 -0.77 14.48 16 46 H 0.00 0.02 7.04 -2.39 -0.02 0.01 16 47 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 Total: -1.00 -87.33 359.72 3.57 -83.76 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: 0.99 Total: 9.70 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: 5.69 Total: 8.54 kcal Atomic # 7 Polarization: -114.36 SS G_CDS: -3.35 Total: -117.71 kcal Atomic # 8 Polarization: -35.02 SS G_CDS: -1.78 Total: -36.80 kcal Atomic # 14 Polarization: 50.47 SS G_CDS: 2.03 Total: 52.50 kcal Total: -87.33 3.57 -83.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033986374.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.412 kcal (2) G-P(sol) polarization free energy of solvation -87.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds