Wall clock time and date at job start Tue Mar 31 2020 17:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47486 * 2 1 4 4 C 1.34772 * 120.00177 * 83.29311 * 3 2 1 5 5 O 1.21286 * 119.99785 * 5.10418 * 4 3 2 6 6 C 1.50700 * 120.00031 * 185.11121 * 4 3 2 7 7 H 1.08998 * 110.83552 * 309.35037 * 6 4 3 8 8 C 1.54715 * 110.94481 * 73.07144 * 6 4 3 9 9 O 1.43768 * 102.79353 * 92.79088 * 8 6 4 10 10 C 1.36137 * 109.28717 * 27.55465 * 9 8 6 11 11 C 1.39285 * 129.87576 * 161.44869 * 10 9 8 12 12 C 1.37924 * 120.24240 * 179.54629 * 11 10 9 13 13 C 1.38287 * 120.35214 * 0.02562 * 12 11 10 14 14 C 1.38357 * 119.76574 * 0.19570 * 13 12 11 15 15 C 1.37738 * 119.97437 * 359.97010 * 14 13 12 16 16 C 1.46506 * 119.99661 * 263.29560 * 3 2 1 17 17 H 1.09002 * 110.87891 * 169.14548 * 16 3 2 18 18 C 1.55150 * 111.00335 * 293.02309 * 16 3 2 19 19 C 1.54328 * 102.94120 * 82.57578 * 18 16 3 20 20 N 1.47020 * 107.27197 * 22.19086 * 19 18 16 21 21 C 1.36934 * 125.65404 * 181.01878 * 20 19 18 22 22 H 1.07997 * 120.00230 * 176.10427 * 21 20 19 23 23 C 1.38816 * 119.99593 * 356.11269 * 21 20 19 24 24 N 1.31615 * 119.99997 * 162.24385 * 23 21 20 25 25 Si 1.86803 * 119.99680 * 342.23524 * 23 21 20 26 26 H 1.48502 * 109.46743 * 186.36911 * 25 23 21 27 27 H 1.48496 * 109.47428 * 306.36663 * 25 23 21 28 28 H 1.48501 * 109.46933 * 66.37125 * 25 23 21 29 29 C 1.47431 * 108.70232 * 1.28851 * 20 19 18 30 30 H 1.09005 * 109.47205 * 184.65856 * 1 2 3 31 31 H 1.08991 * 109.47280 * 304.66272 * 1 2 3 32 32 H 1.09003 * 109.47056 * 64.65955 * 1 2 3 33 33 H 1.09006 * 109.47295 * 239.99707 * 2 1 3 34 34 H 1.08998 * 109.46897 * 120.00333 * 2 1 3 35 35 H 1.08996 * 110.74443 * 211.11976 * 8 6 4 36 36 H 1.08998 * 110.74608 * 334.28583 * 8 6 4 37 37 H 1.08004 * 119.87941 * 359.57294 * 11 10 9 38 38 H 1.07997 * 119.82705 * 180.02562 * 12 11 10 39 39 H 1.08003 * 120.11887 * 180.17204 * 13 12 11 40 40 H 1.07996 * 120.00852 * 179.97438 * 14 13 12 41 41 H 1.09001 * 110.72286 * 324.21170 * 18 16 3 42 42 H 1.08995 * 110.87474 * 201.00864 * 18 16 3 43 43 H 1.08994 * 109.88004 * 262.77379 * 19 18 16 44 44 H 1.09004 * 110.00749 * 141.68028 * 19 18 16 45 45 H 0.96996 * 119.99861 * 5.02449 * 24 23 21 46 46 H 1.09002 * 110.36722 * 94.47920 * 29 20 19 47 47 H 1.08995 * 110.36675 * 216.80299 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1146 2.0619 1.1592 5 8 1.8857 1.5035 2.2112 6 6 2.5063 3.5171 1.1481 7 1 3.4096 3.6709 0.5578 8 6 1.3471 4.3980 0.6248 9 8 0.6637 4.7750 1.8321 10 6 1.5478 4.7772 2.8674 11 6 1.4584 5.3864 4.1167 12 6 2.4819 5.2496 5.0311 13 6 3.6056 4.5076 4.7163 14 6 3.7042 3.9031 3.4757 15 6 2.6847 4.0412 2.5599 16 6 2.4023 2.0223 -1.2601 17 1 2.5582 3.0920 -1.1200 18 6 3.6637 1.3507 -1.8641 19 6 3.0839 0.1234 -2.5983 20 7 1.6668 0.4060 -2.8692 21 6 0.7882 -0.4416 -3.4894 22 1 -0.2515 -0.1657 -3.5860 23 6 1.2339 -1.6557 -3.9936 24 7 0.3710 -2.6111 -4.2677 25 14 3.0583 -1.9335 -4.2834 26 1 3.2583 -3.2382 -4.9639 27 1 3.5957 -0.8430 -5.1361 28 1 3.7710 -1.9402 -2.9806 29 6 1.3498 1.7559 -2.3683 30 1 -0.3634 -1.0243 0.0835 31 1 -0.3633 0.5844 0.8452 32 1 -0.3633 0.4398 -0.9288 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.7329 5.2771 0.1087 36 1 0.6915 3.8242 -0.0302 37 1 0.5843 5.9677 4.3706 38 1 2.4054 5.7245 5.9980 39 1 4.4036 4.4006 5.4362 40 1 4.5802 3.3230 3.2256 41 1 4.3500 1.0402 -1.0762 42 1 4.1618 2.0199 -2.5656 43 1 3.1715 -0.7613 -1.9677 44 1 3.6160 -0.0359 -3.5362 45 1 -0.5808 -2.4427 -4.1868 46 1 1.4446 2.4896 -3.1689 47 1 0.3440 1.7785 -1.9490 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034056537.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:24 Heat of formation + Delta-G solvation = 20.110410 kcal Electronic energy + Delta-G solvation = -29873.958992 eV Core-core repulsion = 26024.259273 eV Total energy + Delta-G solvation = -3849.699719 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -41.68494 -39.81434 -37.88971 -37.52559 -34.55236 -33.21273 -32.43689 -30.93695 -30.18548 -29.59456 -28.91635 -28.25653 -24.56846 -24.02102 -23.19401 -22.40143 -21.62389 -21.47268 -20.61907 -18.81733 -17.90754 -17.52281 -17.12760 -16.64536 -16.30755 -15.87657 -15.62519 -15.22829 -14.69669 -14.55738 -14.16970 -13.74016 -13.63665 -13.32950 -13.28021 -13.09553 -13.00901 -12.73128 -12.66337 -12.28676 -11.92840 -11.88480 -11.82998 -11.66364 -11.37586 -11.33896 -11.20913 -11.04914 -10.91699 -10.79713 -10.41688 -9.82522 -9.68408 -9.47817 -9.09782 -9.03965 -8.75420 -8.40307 -8.29757 -7.14552 -6.36235 -3.26978 1.11503 1.25048 2.59611 3.08007 3.09904 3.32479 3.41501 3.60861 3.63046 4.06079 4.31735 4.48072 4.53034 4.62604 4.72383 4.88197 4.89749 4.93650 5.06149 5.10872 5.19133 5.20501 5.24196 5.37956 5.43762 5.46503 5.64238 5.69831 5.75149 5.82888 5.90218 6.00772 6.03822 6.13893 6.17420 6.24663 6.25425 6.29789 6.32359 6.41910 6.42387 6.55616 6.68033 6.84680 6.90499 7.01216 7.52817 7.64834 8.25666 8.29710 8.97096 9.48321 10.13139 11.13992 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.025348 B = 0.003397 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.378811 B = 8240.567152 C = 8402.068365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.104 3.896 3 N -0.587 5.587 4 C 0.521 3.479 5 O -0.528 6.528 6 C -0.104 4.104 7 H 0.120 0.880 8 C 0.063 3.937 9 O -0.299 6.299 10 C 0.115 3.885 11 C -0.142 4.142 12 C -0.084 4.084 13 C -0.151 4.151 14 C -0.054 4.054 15 C -0.146 4.146 16 C 0.112 3.888 17 H 0.093 0.907 18 C -0.141 4.141 19 C 0.099 3.901 20 N -0.607 5.607 21 C -0.321 4.321 22 H 0.079 0.921 23 C -0.023 4.023 24 N -0.925 5.925 25 Si 1.072 2.928 26 H -0.302 1.302 27 H -0.299 1.299 28 H -0.285 1.285 29 C 0.125 3.875 30 H 0.060 0.940 31 H 0.040 0.960 32 H 0.067 0.933 33 H 0.117 0.883 34 H 0.063 0.937 35 H 0.091 0.909 36 H 0.113 0.887 37 H 0.127 0.873 38 H 0.130 0.870 39 H 0.127 0.873 40 H 0.123 0.877 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.053 0.947 44 H 0.035 0.965 45 H 0.262 0.738 46 H 0.036 0.964 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.523 17.178 12.872 22.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.018 4.018 3 N -0.319 5.319 4 C 0.308 3.692 5 O -0.404 6.404 6 C -0.125 4.125 7 H 0.137 0.863 8 C -0.012 4.012 9 O -0.212 6.212 10 C 0.069 3.931 11 C -0.160 4.160 12 C -0.102 4.102 13 C -0.169 4.169 14 C -0.072 4.072 15 C -0.147 4.147 16 C 0.007 3.993 17 H 0.111 0.889 18 C -0.180 4.180 19 C -0.025 4.025 20 N -0.335 5.335 21 C -0.448 4.448 22 H 0.097 0.903 23 C -0.223 4.223 24 N -0.567 5.567 25 Si 0.906 3.094 26 H -0.230 1.230 27 H -0.228 1.228 28 H -0.213 1.213 29 C -0.002 4.002 30 H 0.079 0.921 31 H 0.059 0.941 32 H 0.086 0.914 33 H 0.135 0.865 34 H 0.081 0.919 35 H 0.109 0.891 36 H 0.131 0.869 37 H 0.145 0.855 38 H 0.148 0.852 39 H 0.145 0.855 40 H 0.141 0.859 41 H 0.091 0.909 42 H 0.098 0.902 43 H 0.070 0.930 44 H 0.052 0.948 45 H 0.072 0.928 46 H 0.053 0.947 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.172 15.690 12.890 21.889 hybrid contribution -0.960 1.095 0.064 1.457 sum 7.211 16.785 12.955 22.395 Atomic orbital electron populations 1.22017 0.95791 1.01867 1.01437 1.21790 0.94970 0.80931 1.04059 1.47922 1.63751 1.14723 1.05492 1.20043 0.77905 0.87411 0.83881 1.90699 1.49507 1.69677 1.30553 1.21607 1.01289 0.94158 0.95484 0.86250 1.23860 0.92857 0.97939 0.86541 1.86847 1.33236 1.85231 1.15929 1.19565 0.88409 0.94856 0.90239 1.20219 1.01059 1.03139 0.91629 1.20852 0.92885 0.97902 0.98522 1.20996 0.99004 1.00383 0.96553 1.20276 0.97421 0.97199 0.92353 1.20186 0.97097 1.01340 0.96120 1.22506 0.96309 0.95977 0.84546 0.88871 1.23005 0.96747 0.98493 0.99797 1.22152 0.86606 0.96464 0.97322 1.44871 1.05769 1.13369 1.69486 1.20058 0.90514 0.99141 1.35126 0.90289 1.25707 1.06672 0.91369 0.98503 1.70912 1.02986 1.30518 1.52271 0.83832 0.75317 0.74086 0.76116 1.23047 1.22788 1.21303 1.21988 0.96609 0.88734 0.92839 0.92125 0.94085 0.91435 0.86547 0.91867 0.89131 0.86948 0.85484 0.85219 0.85495 0.85928 0.90859 0.90188 0.92981 0.94817 0.92779 0.94675 0.92567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 10.00 37.16 0.37 -2.46 16 2 C 0.10 1.90 5.28 -4.04 -0.02 1.88 16 3 N -0.59 -9.23 2.53 -163.54 -0.41 -9.64 16 4 C 0.52 8.25 6.85 -10.99 -0.08 8.17 16 5 O -0.53 -10.37 15.81 5.55 0.09 -10.28 16 6 C -0.10 -1.26 2.45 -91.55 -0.22 -1.49 16 7 H 0.12 1.12 7.32 -51.93 -0.38 0.74 16 8 C 0.06 0.70 6.55 38.06 0.25 0.95 16 9 O -0.30 -4.13 11.10 -20.17 -0.22 -4.35 16 10 C 0.11 1.54 7.04 -38.95 -0.27 1.26 16 11 C -0.14 -1.61 10.06 -39.31 -0.40 -2.00 16 12 C -0.08 -0.80 10.02 -39.68 -0.40 -1.20 16 13 C -0.15 -1.50 10.07 -39.52 -0.40 -1.90 16 14 C -0.05 -0.63 10.03 -39.72 -0.40 -1.03 16 15 C -0.15 -1.90 4.94 -104.10 -0.51 -2.42 16 16 C 0.11 1.55 3.01 -65.66 -0.20 1.35 16 17 H 0.09 0.96 5.23 -51.93 -0.27 0.69 16 18 C -0.14 -2.03 6.56 -24.90 -0.16 -2.19 16 19 C 0.10 1.92 3.56 -3.06 -0.01 1.91 16 20 N -0.61 -13.04 2.10 -169.93 -0.36 -13.40 16 21 C -0.32 -8.38 10.55 -15.06 -0.16 -8.54 16 22 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 23 C -0.02 -0.63 5.50 -17.43 -0.10 -0.73 16 24 N -0.93 -27.92 13.70 55.49 0.76 -27.16 16 25 Si 1.07 25.53 24.51 -169.99 -4.17 21.36 16 26 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 27 H -0.30 -6.84 6.71 56.52 0.38 -6.46 16 28 H -0.29 -6.19 5.32 56.52 0.30 -5.89 16 29 C 0.13 2.14 6.12 -2.41 -0.01 2.12 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 1.32 5.92 -51.93 -0.31 1.01 16 33 H 0.12 2.38 3.69 -51.93 -0.19 2.19 16 34 H 0.06 1.18 7.56 -51.93 -0.39 0.79 16 35 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.11 1.24 7.47 -51.93 -0.39 0.85 16 37 H 0.13 1.21 8.06 -52.48 -0.42 0.78 16 38 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 40 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 41 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.05 1.10 4.73 -51.93 -0.25 0.85 16 44 H 0.03 0.71 4.20 -51.93 -0.22 0.49 16 45 H 0.26 7.85 8.73 -40.82 -0.36 7.49 16 46 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.06 1.00 6.16 -51.93 -0.32 0.68 16 LS Contribution 357.65 15.07 5.39 5.39 Total: -1.00 -32.90 357.65 -8.28 -41.18 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -6.64 Total: 3.22 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: -2.72 Total: -6.31 kcal Atomic # 7 Polarization: -50.19 SS G_CDS: -0.01 Total: -50.20 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: -0.14 Total: -14.64 kcal Atomic # 14 Polarization: 25.53 SS G_CDS: -4.17 Total: 21.36 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.90 -8.28 -41.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034056537.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.295 kcal (2) G-P(sol) polarization free energy of solvation -32.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds