Wall clock time and date at job start Tue Mar 31 2020 17:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47486 * 2 1 4 4 C 1.34772 * 120.00177 * 83.29311 * 3 2 1 5 5 O 1.21286 * 119.99785 * 5.10418 * 4 3 2 6 6 C 1.50700 * 120.00031 * 185.11121 * 4 3 2 7 7 H 1.08998 * 110.83552 * 309.35037 * 6 4 3 8 8 C 1.54715 * 110.94481 * 73.07144 * 6 4 3 9 9 O 1.43768 * 102.79353 * 92.79088 * 8 6 4 10 10 C 1.36137 * 109.28717 * 27.55465 * 9 8 6 11 11 C 1.39285 * 129.87576 * 161.44869 * 10 9 8 12 12 C 1.37924 * 120.24240 * 179.54629 * 11 10 9 13 13 C 1.38287 * 120.35214 * 0.02562 * 12 11 10 14 14 C 1.38357 * 119.76574 * 0.19570 * 13 12 11 15 15 C 1.37738 * 119.97437 * 359.97010 * 14 13 12 16 16 C 1.46506 * 119.99661 * 263.29560 * 3 2 1 17 17 H 1.09002 * 110.87891 * 169.14548 * 16 3 2 18 18 C 1.55150 * 111.00335 * 293.02309 * 16 3 2 19 19 C 1.54328 * 102.94120 * 82.57578 * 18 16 3 20 20 N 1.47020 * 107.27197 * 22.19086 * 19 18 16 21 21 C 1.36934 * 125.65404 * 181.01878 * 20 19 18 22 22 H 1.07997 * 120.00230 * 176.10427 * 21 20 19 23 23 C 1.38816 * 119.99593 * 356.11269 * 21 20 19 24 24 N 1.31615 * 119.99997 * 162.24385 * 23 21 20 25 25 Si 1.86803 * 119.99680 * 342.23524 * 23 21 20 26 26 H 1.48502 * 109.46743 * 186.36911 * 25 23 21 27 27 H 1.48496 * 109.47428 * 306.36663 * 25 23 21 28 28 H 1.48501 * 109.46933 * 66.37125 * 25 23 21 29 29 C 1.47431 * 108.70232 * 1.28851 * 20 19 18 30 30 H 1.09005 * 109.47205 * 184.65856 * 1 2 3 31 31 H 1.08991 * 109.47280 * 304.66272 * 1 2 3 32 32 H 1.09003 * 109.47056 * 64.65955 * 1 2 3 33 33 H 1.09006 * 109.47295 * 239.99707 * 2 1 3 34 34 H 1.08998 * 109.46897 * 120.00333 * 2 1 3 35 35 H 1.08996 * 110.74443 * 211.11976 * 8 6 4 36 36 H 1.08998 * 110.74608 * 334.28583 * 8 6 4 37 37 H 1.08004 * 119.87941 * 359.57294 * 11 10 9 38 38 H 1.07997 * 119.82705 * 180.02562 * 12 11 10 39 39 H 1.08003 * 120.11887 * 180.17204 * 13 12 11 40 40 H 1.07996 * 120.00852 * 179.97438 * 14 13 12 41 41 H 1.09001 * 110.72286 * 324.21170 * 18 16 3 42 42 H 1.08995 * 110.87474 * 201.00864 * 18 16 3 43 43 H 1.08994 * 109.88004 * 262.77379 * 19 18 16 44 44 H 1.09004 * 110.00749 * 141.68028 * 19 18 16 45 45 H 0.96996 * 119.99861 * 5.02449 * 24 23 21 46 46 H 1.09002 * 110.36722 * 94.47920 * 29 20 19 47 47 H 1.08995 * 110.36675 * 216.80299 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1146 2.0619 1.1592 5 8 1.8857 1.5035 2.2112 6 6 2.5063 3.5171 1.1481 7 1 3.4096 3.6709 0.5578 8 6 1.3471 4.3980 0.6248 9 8 0.6637 4.7750 1.8321 10 6 1.5478 4.7772 2.8674 11 6 1.4584 5.3864 4.1167 12 6 2.4819 5.2496 5.0311 13 6 3.6056 4.5076 4.7163 14 6 3.7042 3.9031 3.4757 15 6 2.6847 4.0412 2.5599 16 6 2.4023 2.0223 -1.2601 17 1 2.5582 3.0920 -1.1200 18 6 3.6637 1.3507 -1.8641 19 6 3.0839 0.1234 -2.5983 20 7 1.6668 0.4060 -2.8692 21 6 0.7882 -0.4416 -3.4894 22 1 -0.2515 -0.1657 -3.5860 23 6 1.2339 -1.6557 -3.9936 24 7 0.3710 -2.6111 -4.2677 25 14 3.0583 -1.9335 -4.2834 26 1 3.2583 -3.2382 -4.9639 27 1 3.5957 -0.8430 -5.1361 28 1 3.7710 -1.9402 -2.9806 29 6 1.3498 1.7559 -2.3683 30 1 -0.3634 -1.0243 0.0835 31 1 -0.3633 0.5844 0.8452 32 1 -0.3633 0.4398 -0.9288 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.7329 5.2771 0.1087 36 1 0.6915 3.8242 -0.0302 37 1 0.5843 5.9677 4.3706 38 1 2.4054 5.7245 5.9980 39 1 4.4036 4.4006 5.4362 40 1 4.5802 3.3230 3.2256 41 1 4.3500 1.0402 -1.0762 42 1 4.1618 2.0199 -2.5656 43 1 3.1715 -0.7613 -1.9677 44 1 3.6160 -0.0359 -3.5362 45 1 -0.5808 -2.4427 -4.1868 46 1 1.4446 2.4896 -3.1689 47 1 0.3440 1.7785 -1.9490 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034056537.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:21 Heat of formation + Delta-G solvation = -0.966631 kcal Electronic energy + Delta-G solvation = -29874.872961 eV Core-core repulsion = 26024.259273 eV Total energy + Delta-G solvation = -3850.613688 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -42.63215 -41.03711 -39.26301 -38.33558 -36.09763 -34.40373 -34.09197 -32.35564 -31.06568 -30.83978 -30.03072 -29.70108 -25.82367 -25.60600 -24.24126 -23.30893 -22.85029 -22.61712 -22.22131 -20.01567 -19.51958 -18.89141 -18.05595 -17.64395 -17.37496 -17.16591 -16.89401 -16.38140 -15.98545 -15.82234 -15.42721 -15.02683 -14.95442 -14.75302 -14.52424 -14.40581 -14.09106 -13.97949 -13.69066 -13.50991 -13.41483 -13.23688 -13.04627 -12.78848 -12.67722 -12.60521 -12.51362 -12.27142 -12.16761 -11.99502 -11.75907 -11.54405 -11.28841 -10.99466 -10.84064 -10.68209 -9.86946 -9.76558 -9.14134 -9.02664 -8.54662 -5.35555 0.30137 0.43556 1.41934 1.42710 1.52147 1.72313 1.88545 2.27038 2.58620 2.76281 3.13848 3.18875 3.34422 3.46280 3.51087 3.69068 3.72992 3.84986 4.08842 4.14428 4.17415 4.22499 4.33911 4.34502 4.39081 4.40151 4.41880 4.52354 4.54160 4.60328 4.68604 4.71889 4.78649 4.88023 4.95983 4.97971 5.07315 5.11291 5.22532 5.27564 5.36803 5.45006 5.51022 5.55664 5.60876 5.66506 6.15553 6.19274 6.41523 6.89268 7.06814 7.52627 8.15166 8.97267 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.025348 B = 0.003397 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.378811 B = 8240.567152 C = 8402.068365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.111 3.889 3 N -0.586 5.586 4 C 0.521 3.479 5 O -0.573 6.573 6 C -0.097 4.097 7 H 0.157 0.843 8 C 0.060 3.940 9 O -0.324 6.324 10 C 0.086 3.914 11 C -0.156 4.156 12 C -0.081 4.081 13 C -0.152 4.152 14 C -0.069 4.069 15 C -0.166 4.166 16 C 0.121 3.879 17 H 0.145 0.855 18 C -0.128 4.128 19 C 0.088 3.912 20 N -0.623 5.623 21 C -0.289 4.289 22 H 0.046 0.954 23 C -0.085 4.085 24 N -0.970 5.970 25 Si 1.108 2.892 26 H -0.324 1.324 27 H -0.280 1.280 28 H -0.253 1.253 29 C 0.119 3.881 30 H 0.049 0.951 31 H 0.040 0.960 32 H 0.053 0.947 33 H 0.098 0.902 34 H 0.054 0.946 35 H 0.130 0.870 36 H 0.108 0.892 37 H 0.138 0.862 38 H 0.161 0.839 39 H 0.154 0.846 40 H 0.134 0.866 41 H 0.090 0.910 42 H 0.117 0.883 43 H 0.033 0.967 44 H 0.031 0.969 45 H 0.245 0.755 46 H 0.059 0.941 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.668 20.637 14.098 27.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.011 4.011 3 N -0.317 5.317 4 C 0.310 3.690 5 O -0.452 6.452 6 C -0.118 4.118 7 H 0.175 0.825 8 C -0.015 4.015 9 O -0.238 6.238 10 C 0.041 3.959 11 C -0.174 4.174 12 C -0.099 4.099 13 C -0.170 4.170 14 C -0.087 4.087 15 C -0.167 4.167 16 C 0.018 3.982 17 H 0.162 0.838 18 C -0.167 4.167 19 C -0.036 4.036 20 N -0.351 5.351 21 C -0.418 4.418 22 H 0.064 0.936 23 C -0.278 4.278 24 N -0.616 5.616 25 Si 0.938 3.062 26 H -0.254 1.254 27 H -0.207 1.207 28 H -0.179 1.179 29 C -0.007 4.007 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.116 0.884 34 H 0.073 0.927 35 H 0.148 0.852 36 H 0.126 0.874 37 H 0.155 0.845 38 H 0.179 0.821 39 H 0.172 0.828 40 H 0.152 0.848 41 H 0.109 0.891 42 H 0.135 0.865 43 H 0.051 0.949 44 H 0.048 0.952 45 H 0.054 0.946 46 H 0.077 0.923 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 11.340 19.234 14.134 26.426 hybrid contribution -2.054 0.110 -0.200 2.066 sum 9.286 19.345 13.934 25.585 Atomic orbital electron populations 1.21886 0.96520 1.01043 1.00520 1.21478 0.94223 0.82833 1.02599 1.47943 1.63564 1.13589 1.06626 1.20754 0.76580 0.88843 0.82842 1.90679 1.51353 1.70985 1.32138 1.21663 1.03045 0.90855 0.96195 0.82537 1.24116 0.92255 0.99214 0.85891 1.86797 1.34444 1.85637 1.16962 1.19913 0.88801 0.96229 0.90911 1.20583 1.02096 1.03292 0.91469 1.21267 0.92069 0.97224 0.99336 1.21403 0.99729 0.99372 0.96483 1.20593 0.97673 0.97550 0.92870 1.20387 0.97504 1.01946 0.96883 1.22667 0.94709 0.98498 0.82370 0.83807 1.23035 0.96731 0.96546 1.00387 1.22264 0.85300 0.98684 0.97352 1.44855 1.06515 1.14771 1.68961 1.19857 0.89971 0.99372 1.32629 0.93577 1.26871 1.09677 0.91806 0.99407 1.71027 1.02254 1.32139 1.56190 0.83428 0.71883 0.73400 0.77502 1.25364 1.20728 1.17864 1.22211 0.97189 0.86845 0.94416 0.93164 0.94088 0.92824 0.88444 0.92707 0.85205 0.87422 0.84459 0.82146 0.82827 0.84831 0.89139 0.86480 0.94939 0.95203 0.94588 0.92325 0.93958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.42 10.00 71.98 0.72 -4.70 16 2 C 0.11 4.07 5.28 86.38 0.46 4.53 16 3 N -0.59 -17.15 2.53 -789.71 -2.00 -19.15 16 4 C 0.52 15.37 6.85 87.66 0.60 15.97 16 5 O -0.57 -22.11 15.81 -3.05 -0.05 -22.16 16 6 C -0.10 -2.00 2.45 -11.40 -0.03 -2.03 16 7 H 0.16 2.00 7.32 -2.39 -0.02 1.98 16 8 C 0.06 1.12 6.55 72.57 0.48 1.59 16 9 O -0.32 -8.45 11.10 -95.10 -1.06 -9.51 16 10 C 0.09 2.17 7.04 22.68 0.16 2.33 16 11 C -0.16 -3.25 10.06 22.45 0.23 -3.03 16 12 C -0.08 -1.33 10.02 22.21 0.22 -1.11 16 13 C -0.15 -2.55 10.07 22.31 0.22 -2.33 16 14 C -0.07 -1.41 10.03 22.18 0.22 -1.19 16 15 C -0.17 -3.90 4.94 -19.53 -0.10 -4.00 16 16 C 0.12 2.86 3.01 46.46 0.14 3.00 16 17 H 0.14 2.03 5.23 -2.39 -0.01 2.02 16 18 C -0.13 -3.03 6.56 31.78 0.21 -2.82 16 19 C 0.09 3.18 3.56 86.73 0.31 3.49 16 20 N -0.62 -26.12 2.10 -691.54 -1.45 -27.57 16 21 C -0.29 -15.47 10.55 84.04 0.89 -14.58 16 22 H 0.05 2.72 8.06 -2.91 -0.02 2.69 16 23 C -0.09 -4.88 5.50 84.86 0.47 -4.41 16 24 N -0.97 -61.49 13.70 21.65 0.30 -61.19 16 25 Si 1.11 51.79 24.51 68.60 1.68 53.47 16 26 H -0.32 -16.17 7.11 99.48 0.71 -15.46 16 27 H -0.28 -12.02 6.71 99.48 0.67 -11.36 16 28 H -0.25 -10.43 5.32 99.48 0.53 -9.90 16 29 C 0.12 3.77 6.12 86.93 0.53 4.30 16 30 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 31 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.05 2.17 5.92 -2.39 -0.01 2.16 16 33 H 0.10 3.99 3.69 -2.38 -0.01 3.98 16 34 H 0.05 2.08 7.56 -2.39 -0.02 2.06 16 35 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.11 2.06 7.47 -2.39 -0.02 2.04 16 37 H 0.14 2.41 8.06 -2.91 -0.02 2.38 16 38 H 0.16 1.53 8.06 -2.91 -0.02 1.50 16 39 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 40 H 0.13 2.32 8.06 -2.91 -0.02 2.29 16 41 H 0.09 1.91 8.14 -2.39 -0.02 1.90 16 42 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.03 1.32 4.73 -2.39 -0.01 1.31 16 44 H 0.03 1.15 4.20 -2.38 -0.01 1.14 16 45 H 0.24 15.67 8.73 -92.71 -0.81 14.86 16 46 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 47 H 0.04 1.47 6.16 -2.39 -0.01 1.45 16 Total: -1.00 -77.80 357.65 3.88 -73.92 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: 0.74 Total: 17.17 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: 5.72 Total: -4.98 kcal Atomic # 7 Polarization: -104.75 SS G_CDS: -3.16 Total: -107.91 kcal Atomic # 8 Polarization: -30.57 SS G_CDS: -1.10 Total: -31.67 kcal Atomic # 14 Polarization: 51.79 SS G_CDS: 1.68 Total: 53.47 kcal Total: -77.80 3.88 -73.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034056537.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.949 kcal (2) G-P(sol) polarization free energy of solvation -77.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds