Wall clock time and date at job start Tue Mar 31 2020 16:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47292 * 2 1 4 4 O 1.42901 * 109.47084 * 120.00510 * 2 1 3 5 5 C 1.35905 * 116.99859 * 273.19512 * 4 2 1 6 6 C 1.38728 * 120.05454 * 4.52861 * 5 4 2 7 7 C 1.38146 * 119.94312 * 179.74581 * 6 5 4 8 8 C 1.38260 * 120.05662 * 0.50724 * 7 6 5 9 9 C 1.38271 * 120.10928 * 359.76696 * 8 7 6 10 10 C 1.38143 * 120.05807 * 359.97438 * 9 8 7 11 11 C 1.50697 * 109.46878 * 240.00149 * 2 1 3 12 12 O 1.21278 * 120.00132 * 245.00050 * 11 2 1 13 13 N 1.34772 * 120.00111 * 65.00371 * 11 2 1 14 14 C 1.47288 * 136.54241 * 359.97438 * 13 11 2 15 15 C 1.52800 * 87.32071 * 150.72176 * 14 13 11 16 16 H 1.08998 * 114.69884 * 142.41284 * 15 14 13 17 17 C 1.53068 * 111.38598 * 274.42936 * 15 14 13 18 18 C 1.53956 * 108.39400 * 144.15358 * 17 15 14 19 19 N 1.46543 * 107.57670 * 299.97851 * 18 17 15 20 20 C 1.36935 * 119.73791 * 237.76952 * 19 18 17 21 21 H 1.07998 * 120.00086 * 146.54018 * 20 19 18 22 22 C 1.38808 * 120.00150 * 326.54482 * 20 19 18 23 23 N 1.31619 * 120.00131 * 335.90045 * 22 20 19 24 24 Si 1.86801 * 120.00154 * 155.89988 * 22 20 19 25 25 H 1.48501 * 109.47162 * 59.99965 * 24 22 20 26 26 H 1.48491 * 109.47068 * 299.99953 * 24 22 20 27 27 H 1.48496 * 109.47248 * 179.97438 * 24 22 20 28 28 C 1.45705 * 120.52243 * 57.50099 * 19 18 17 29 29 C 1.46470 * 136.54433 * 180.02562 * 13 11 2 30 30 H 1.09004 * 111.44299 * 97.09552 * 29 13 11 31 31 H 1.08998 * 109.47077 * 59.99838 * 1 2 3 32 32 H 1.08996 * 109.47292 * 180.02562 * 1 2 3 33 33 H 1.09010 * 109.46606 * 299.99702 * 1 2 3 34 34 H 1.08007 * 120.03203 * 0.02562 * 6 5 4 35 35 H 1.08000 * 119.97278 * 180.23801 * 7 6 5 36 36 H 1.08003 * 119.95060 * 179.74680 * 8 7 6 37 37 H 1.08001 * 119.97246 * 179.97438 * 9 8 7 38 38 H 1.07992 * 120.03056 * 180.02562 * 10 9 8 39 39 H 1.08998 * 113.53176 * 266.07314 * 14 13 11 40 40 H 1.08998 * 113.52873 * 36.64365 * 14 13 11 41 41 H 1.09003 * 109.51330 * 262.82252 * 17 15 14 42 42 H 1.08991 * 109.51401 * 22.98050 * 17 15 14 43 43 H 1.08996 * 108.93000 * 181.12664 * 18 17 15 44 44 H 1.08998 * 111.14477 * 60.09571 * 18 17 15 45 45 H 0.97001 * 119.99853 * 354.22113 * 23 22 20 46 46 H 1.08997 * 108.79117 * 81.15666 * 28 19 18 47 47 H 1.09003 * 108.78462 * 199.36913 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.1484 0.0711 2.2946 6 6 1.7477 1.3992 2.3051 7 6 1.8882 2.1528 3.4543 8 6 2.4374 1.5874 4.5903 9 6 2.8428 0.2655 4.5806 10 6 2.6995 -0.4938 3.4355 11 6 2.0323 -0.7104 -1.2305 12 8 2.6529 -1.7466 -1.1216 13 7 1.7919 -0.1941 -2.4520 14 6 1.1066 0.9907 -2.9959 15 6 2.0860 0.9307 -4.1672 16 1 1.6543 1.1844 -5.1354 17 6 3.3896 1.6644 -3.8430 18 6 4.5536 0.9004 -4.5001 19 7 4.5640 -0.4548 -3.9427 20 6 5.6858 -0.9208 -3.3108 21 1 5.5928 -1.6008 -2.4769 22 6 6.9427 -0.5190 -3.7417 23 7 7.1132 -0.1071 -4.9801 24 14 8.3921 -0.5629 -2.5642 25 1 8.6032 -1.9544 -2.0906 26 1 8.1126 0.3184 -1.4022 27 1 9.6129 -0.0882 -3.2638 28 6 3.3880 -1.3084 -4.0506 29 6 2.0933 -0.5582 -3.8383 30 1 1.2550 -1.0747 -4.3059 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8901 34 1 1.3220 1.8425 1.4169 35 1 1.5729 3.1857 3.4642 36 1 2.5503 2.1793 5.4866 37 1 3.2719 -0.1738 5.4691 38 1 3.0159 -1.5263 3.4286 39 1 0.0682 0.8050 -3.2705 40 1 1.2279 1.8835 -2.3825 41 1 3.3521 2.6728 -4.2552 42 1 3.5188 1.7168 -2.7620 43 1 5.4890 1.4046 -4.2578 44 1 4.4310 0.8520 -5.5820 45 1 6.3818 -0.1629 -5.6149 46 1 3.3726 -1.7612 -5.0419 47 1 3.4603 -2.1012 -3.3061 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084811248.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:12:09 Heat of formation + Delta-G solvation = 27.779610 kcal Electronic energy + Delta-G solvation = -29347.385534 eV Core-core repulsion = 25498.018376 eV Total energy + Delta-G solvation = -3849.367157 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.04342 -40.25087 -38.24826 -36.97531 -35.55084 -32.66487 -31.59412 -30.95753 -30.92441 -29.78424 -28.62883 -26.87727 -24.83597 -23.76523 -23.25402 -22.75583 -21.98355 -21.09347 -19.92788 -18.53276 -17.89437 -17.38397 -16.65346 -16.24030 -16.03724 -15.70746 -15.37392 -15.08547 -14.49894 -14.21215 -13.96503 -13.88855 -13.53755 -13.50668 -13.37916 -13.19523 -12.96115 -12.82043 -12.54779 -12.45092 -11.99216 -11.83612 -11.77028 -11.71190 -11.19664 -11.09635 -10.90803 -10.80659 -10.64773 -10.58061 -10.10262 -9.93842 -9.85518 -9.33729 -9.14217 -9.06967 -8.44888 -8.29474 -8.25092 -6.75573 -5.97720 -3.19076 1.19837 1.32291 2.51440 2.87468 3.43767 3.57524 3.58908 3.66876 3.77599 4.32103 4.50370 4.58123 4.67463 4.70961 4.74229 4.79993 4.97984 5.01429 5.18362 5.22224 5.23193 5.28113 5.33376 5.35686 5.41617 5.47942 5.52496 5.59817 5.71041 5.79089 5.84565 5.86942 5.89827 6.05952 6.19130 6.25944 6.32637 6.38761 6.39096 6.49170 6.62815 6.72182 6.89205 7.03299 7.19000 7.31404 7.99325 8.24714 8.45091 8.69918 9.24154 9.94564 10.34999 11.29246 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.010896 B = 0.004248 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2569.176174 B = 6590.142209 C = 8140.591898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.073 3.927 3 H 0.095 0.905 4 O -0.283 6.283 5 C 0.136 3.864 6 C -0.213 4.213 7 C -0.080 4.080 8 C -0.163 4.163 9 C -0.080 4.080 10 C -0.150 4.150 11 C 0.548 3.452 12 O -0.504 6.504 13 N -0.630 5.630 14 C 0.092 3.908 15 C -0.110 4.110 16 H 0.094 0.906 17 C -0.116 4.116 18 C 0.153 3.847 19 N -0.588 5.588 20 C -0.342 4.342 21 H 0.053 0.947 22 C -0.021 4.021 23 N -0.917 5.917 24 Si 1.061 2.939 25 H -0.292 1.292 26 H -0.294 1.294 27 H -0.286 1.286 28 C 0.143 3.857 29 C 0.130 3.870 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.128 0.872 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.128 0.872 38 H 0.132 0.868 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.055 0.945 42 H 0.061 0.939 43 H 0.077 0.923 44 H 0.024 0.976 45 H 0.267 0.733 46 H 0.017 0.983 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.139 7.223 11.288 21.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.013 3.987 3 H 0.112 0.888 4 O -0.195 6.195 5 C 0.090 3.910 6 C -0.232 4.232 7 C -0.098 4.098 8 C -0.182 4.182 9 C -0.098 4.098 10 C -0.168 4.168 11 C 0.335 3.665 12 O -0.377 6.377 13 N -0.368 5.368 14 C -0.032 4.032 15 C -0.129 4.129 16 H 0.112 0.888 17 C -0.155 4.155 18 C 0.027 3.973 19 N -0.312 5.312 20 C -0.472 4.472 21 H 0.071 0.929 22 C -0.223 4.223 23 N -0.557 5.557 24 Si 0.891 3.109 25 H -0.219 1.219 26 H -0.222 1.222 27 H -0.211 1.211 28 C 0.016 3.984 29 C 0.027 3.973 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.146 0.854 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.146 0.854 38 H 0.150 0.850 39 H 0.100 0.900 40 H 0.091 0.909 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.095 0.905 44 H 0.042 0.958 45 H 0.078 0.922 46 H 0.035 0.965 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.079 6.672 11.727 20.234 hybrid contribution -1.915 -0.162 -0.169 1.930 sum -16.994 6.510 11.558 21.559 Atomic orbital electron populations 1.22273 0.92859 1.04174 1.03451 1.22109 0.95306 0.97087 0.84161 0.88773 1.86226 1.80799 1.36192 1.16313 1.19130 0.94787 0.90214 0.86881 1.21291 1.07722 0.93995 1.00198 1.20922 0.97247 0.99329 0.92325 1.21047 1.02679 0.95690 0.98737 1.20974 0.97756 0.93926 0.97165 1.20508 1.03432 1.01548 0.91342 1.19290 0.80300 0.84958 0.81937 1.90762 1.38841 1.23036 1.85033 1.49375 1.55671 1.27272 1.04527 1.23207 0.96758 0.88665 0.94525 1.22608 0.96741 0.95890 0.97631 0.88776 1.22052 0.94693 0.97520 1.01286 1.20978 0.96379 0.85770 0.94216 1.43523 1.10655 1.09561 1.67434 1.19987 0.85290 1.30851 1.11061 0.92940 1.25829 0.98616 0.99480 0.98383 1.70789 1.34570 1.48295 1.02050 0.83576 0.76064 0.76263 0.74964 1.21906 1.22171 1.21125 1.20277 0.85561 0.93553 0.98972 1.22454 0.99364 0.96554 0.78959 0.90282 0.90400 0.90813 0.90898 0.85445 0.85865 0.86006 0.85366 0.84987 0.89953 0.90852 0.92624 0.92017 0.90510 0.95829 0.92235 0.96513 0.91057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.79 9.16 37.16 0.34 -1.45 16 2 C 0.07 1.07 2.49 -27.88 -0.07 1.00 16 3 H 0.09 1.25 6.14 -51.93 -0.32 0.93 16 4 O -0.28 -4.74 9.33 -39.30 -0.37 -5.10 16 5 C 0.14 1.94 6.62 -39.22 -0.26 1.68 16 6 C -0.21 -2.54 8.35 -39.43 -0.33 -2.87 16 7 C -0.08 -0.82 10.04 -39.61 -0.40 -1.22 16 8 C -0.16 -1.62 10.04 -39.56 -0.40 -2.01 16 9 C -0.08 -0.85 10.04 -39.60 -0.40 -1.25 16 10 C -0.15 -1.96 9.99 -39.43 -0.39 -2.36 16 11 C 0.55 10.23 7.36 -10.99 -0.08 10.15 16 12 O -0.50 -12.02 15.75 -14.30 -0.23 -12.24 16 13 N -0.63 -10.25 3.24 -191.14 -0.62 -10.87 16 14 C 0.09 1.05 6.50 -12.20 -0.08 0.97 16 15 C -0.11 -1.55 4.47 -90.97 -0.41 -1.96 16 16 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 17 C -0.12 -2.02 5.72 -26.20 -0.15 -2.17 16 18 C 0.15 3.48 4.75 -3.52 -0.02 3.46 16 19 N -0.59 -15.09 2.77 -174.37 -0.48 -15.57 16 20 C -0.34 -10.12 9.34 -15.06 -0.14 -10.26 16 21 H 0.05 1.67 7.92 -52.49 -0.42 1.25 16 22 C -0.02 -0.62 4.63 -17.43 -0.08 -0.70 16 23 N -0.92 -27.88 12.55 55.49 0.70 -27.18 16 24 Si 1.06 26.74 29.98 -169.99 -5.10 21.64 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 27 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 28 C 0.14 3.21 6.15 -5.41 -0.03 3.18 16 29 C 0.13 2.20 4.10 -77.64 -0.32 1.88 16 30 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.08 0.67 6.87 -51.93 -0.36 0.31 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.66 7.19 -51.92 -0.37 0.28 16 34 H 0.13 1.30 5.54 -52.48 -0.29 1.01 16 35 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 36 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 37 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 38 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 39 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.74 8.01 -51.93 -0.42 0.32 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.06 1.18 7.64 -51.93 -0.40 0.78 16 43 H 0.08 1.99 6.47 -51.93 -0.34 1.66 16 44 H 0.02 0.54 7.95 -51.93 -0.41 0.12 16 45 H 0.27 8.12 6.95 -40.82 -0.28 7.84 16 46 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.07 1.81 6.49 -51.93 -0.34 1.47 16 LS Contribution 372.94 15.07 5.62 5.62 Total: -1.00 -36.07 372.94 -10.65 -46.72 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -6.96 Total: 0.91 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -3.21 Total: -3.92 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: -0.41 Total: -53.62 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: -0.59 Total: -17.34 kcal Atomic # 14 Polarization: 26.74 SS G_CDS: -5.10 Total: 21.64 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.07 -10.65 -46.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084811248.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.501 kcal (2) G-P(sol) polarization free energy of solvation -36.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds