Wall clock time and date at job start Tue Mar 31 2020 16:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47292 * 2 1 4 4 O 1.42901 * 109.47084 * 120.00510 * 2 1 3 5 5 C 1.35905 * 116.99859 * 273.19512 * 4 2 1 6 6 C 1.38728 * 120.05454 * 4.52861 * 5 4 2 7 7 C 1.38146 * 119.94312 * 179.74581 * 6 5 4 8 8 C 1.38260 * 120.05662 * 0.50724 * 7 6 5 9 9 C 1.38271 * 120.10928 * 359.76696 * 8 7 6 10 10 C 1.38143 * 120.05807 * 359.97438 * 9 8 7 11 11 C 1.50697 * 109.46878 * 240.00149 * 2 1 3 12 12 O 1.21278 * 120.00132 * 245.00050 * 11 2 1 13 13 N 1.34772 * 120.00111 * 65.00371 * 11 2 1 14 14 C 1.47288 * 136.54241 * 359.97438 * 13 11 2 15 15 C 1.52800 * 87.32071 * 150.72176 * 14 13 11 16 16 H 1.08998 * 114.69884 * 142.41284 * 15 14 13 17 17 C 1.53068 * 111.38598 * 274.42936 * 15 14 13 18 18 C 1.53956 * 108.39400 * 144.15358 * 17 15 14 19 19 N 1.46543 * 107.57670 * 299.97851 * 18 17 15 20 20 C 1.36935 * 119.73791 * 237.76952 * 19 18 17 21 21 H 1.07998 * 120.00086 * 146.54018 * 20 19 18 22 22 C 1.38808 * 120.00150 * 326.54482 * 20 19 18 23 23 N 1.31619 * 120.00131 * 335.90045 * 22 20 19 24 24 Si 1.86801 * 120.00154 * 155.89988 * 22 20 19 25 25 H 1.48501 * 109.47162 * 59.99965 * 24 22 20 26 26 H 1.48491 * 109.47068 * 299.99953 * 24 22 20 27 27 H 1.48496 * 109.47248 * 179.97438 * 24 22 20 28 28 C 1.45705 * 120.52243 * 57.50099 * 19 18 17 29 29 C 1.46470 * 136.54433 * 180.02562 * 13 11 2 30 30 H 1.09004 * 111.44299 * 97.09552 * 29 13 11 31 31 H 1.08998 * 109.47077 * 59.99838 * 1 2 3 32 32 H 1.08996 * 109.47292 * 180.02562 * 1 2 3 33 33 H 1.09010 * 109.46606 * 299.99702 * 1 2 3 34 34 H 1.08007 * 120.03203 * 0.02562 * 6 5 4 35 35 H 1.08000 * 119.97278 * 180.23801 * 7 6 5 36 36 H 1.08003 * 119.95060 * 179.74680 * 8 7 6 37 37 H 1.08001 * 119.97246 * 179.97438 * 9 8 7 38 38 H 1.07992 * 120.03056 * 180.02562 * 10 9 8 39 39 H 1.08998 * 113.53176 * 266.07314 * 14 13 11 40 40 H 1.08998 * 113.52873 * 36.64365 * 14 13 11 41 41 H 1.09003 * 109.51330 * 262.82252 * 17 15 14 42 42 H 1.08991 * 109.51401 * 22.98050 * 17 15 14 43 43 H 1.08996 * 108.93000 * 181.12664 * 18 17 15 44 44 H 1.08998 * 111.14477 * 60.09571 * 18 17 15 45 45 H 0.97001 * 119.99853 * 354.22113 * 23 22 20 46 46 H 1.08997 * 108.79117 * 81.15666 * 28 19 18 47 47 H 1.09003 * 108.78462 * 199.36913 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.1484 0.0711 2.2946 6 6 1.7477 1.3992 2.3051 7 6 1.8882 2.1528 3.4543 8 6 2.4374 1.5874 4.5903 9 6 2.8428 0.2655 4.5806 10 6 2.6995 -0.4938 3.4355 11 6 2.0323 -0.7104 -1.2305 12 8 2.6529 -1.7466 -1.1216 13 7 1.7919 -0.1941 -2.4520 14 6 1.1066 0.9907 -2.9959 15 6 2.0860 0.9307 -4.1672 16 1 1.6543 1.1844 -5.1354 17 6 3.3896 1.6644 -3.8430 18 6 4.5536 0.9004 -4.5001 19 7 4.5640 -0.4548 -3.9427 20 6 5.6858 -0.9208 -3.3108 21 1 5.5928 -1.6008 -2.4769 22 6 6.9427 -0.5190 -3.7417 23 7 7.1132 -0.1071 -4.9801 24 14 8.3921 -0.5629 -2.5642 25 1 8.6032 -1.9544 -2.0906 26 1 8.1126 0.3184 -1.4022 27 1 9.6129 -0.0882 -3.2638 28 6 3.3880 -1.3084 -4.0506 29 6 2.0933 -0.5582 -3.8383 30 1 1.2550 -1.0747 -4.3059 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8901 34 1 1.3220 1.8425 1.4169 35 1 1.5729 3.1857 3.4642 36 1 2.5503 2.1793 5.4866 37 1 3.2719 -0.1738 5.4691 38 1 3.0159 -1.5263 3.4286 39 1 0.0682 0.8050 -3.2705 40 1 1.2279 1.8835 -2.3825 41 1 3.3521 2.6728 -4.2552 42 1 3.5188 1.7168 -2.7620 43 1 5.4890 1.4046 -4.2578 44 1 4.4310 0.8520 -5.5820 45 1 6.3818 -0.1629 -5.6149 46 1 3.3726 -1.7612 -5.0419 47 1 3.4603 -2.1012 -3.3061 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084811248.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:12:08 Heat of formation + Delta-G solvation = 4.642277 kcal Electronic energy + Delta-G solvation = -29348.388844 eV Core-core repulsion = 25498.018376 eV Total energy + Delta-G solvation = -3850.370467 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.29751 -41.29633 -39.47687 -38.14917 -37.43078 -34.02986 -33.20838 -32.63554 -31.82469 -30.72363 -29.99437 -28.53568 -26.00697 -25.53447 -24.60559 -23.71074 -23.03005 -22.62957 -21.24201 -19.76818 -19.50779 -18.88580 -17.97613 -17.50065 -17.17377 -16.76217 -16.55781 -16.28393 -16.13101 -15.69609 -15.46835 -15.39590 -15.13617 -14.73891 -14.45229 -14.41929 -14.25456 -14.09167 -13.60059 -13.56654 -13.43011 -13.20321 -12.91278 -12.80883 -12.67211 -12.49274 -12.44430 -12.17149 -12.03933 -11.97707 -11.79492 -11.75299 -11.54646 -11.13262 -10.59485 -10.54349 -9.98520 -9.69974 -9.22772 -8.91761 -8.28365 -5.50355 0.35482 0.43823 1.38459 1.47080 1.52998 1.53740 1.74569 2.37671 2.55690 2.81280 3.12514 3.20888 3.35888 3.53241 3.58055 3.76854 3.86737 3.89189 3.96220 4.05701 4.24714 4.25698 4.26936 4.36776 4.42259 4.48153 4.51019 4.57382 4.59245 4.61966 4.67783 4.71954 4.83679 4.96874 4.98329 5.00901 5.05374 5.10448 5.12112 5.23862 5.32533 5.44216 5.53860 5.56393 5.82762 5.83684 6.35599 6.37678 6.74592 7.08995 7.10664 7.76953 8.13514 8.91993 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.010896 B = 0.004248 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2569.176174 B = 6590.142209 C = 8140.591898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.079 3.921 3 H 0.108 0.892 4 O -0.322 6.322 5 C 0.102 3.898 6 C -0.217 4.217 7 C -0.080 4.080 8 C -0.160 4.160 9 C -0.082 4.082 10 C -0.179 4.179 11 C 0.532 3.468 12 O -0.580 6.580 13 N -0.635 5.635 14 C 0.107 3.893 15 C -0.102 4.102 16 H 0.138 0.862 17 C -0.106 4.106 18 C 0.154 3.846 19 N -0.605 5.605 20 C -0.353 4.353 21 H 0.014 0.986 22 C -0.061 4.061 23 N -0.930 5.930 24 Si 1.105 2.895 25 H -0.286 1.286 26 H -0.285 1.285 27 H -0.276 1.276 28 C 0.144 3.856 29 C 0.118 3.882 30 H 0.117 0.883 31 H 0.107 0.893 32 H 0.059 0.941 33 H 0.091 0.909 34 H 0.145 0.855 35 H 0.157 0.843 36 H 0.154 0.846 37 H 0.152 0.848 38 H 0.118 0.882 39 H 0.134 0.866 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.040 0.960 43 H 0.036 0.964 44 H 0.024 0.976 45 H 0.256 0.744 46 H 0.012 0.988 47 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.129 11.033 11.957 25.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.020 3.980 3 H 0.126 0.874 4 O -0.236 6.236 5 C 0.058 3.942 6 C -0.236 4.236 7 C -0.097 4.097 8 C -0.178 4.178 9 C -0.100 4.100 10 C -0.198 4.198 11 C 0.322 3.678 12 O -0.459 6.459 13 N -0.371 5.371 14 C -0.014 4.014 15 C -0.120 4.120 16 H 0.156 0.844 17 C -0.145 4.145 18 C 0.029 3.971 19 N -0.330 5.330 20 C -0.484 4.484 21 H 0.032 0.968 22 C -0.259 4.259 23 N -0.571 5.571 24 Si 0.930 3.070 25 H -0.212 1.212 26 H -0.212 1.212 27 H -0.201 1.201 28 C 0.017 3.983 29 C 0.014 3.986 30 H 0.135 0.865 31 H 0.126 0.874 32 H 0.078 0.922 33 H 0.110 0.890 34 H 0.163 0.837 35 H 0.174 0.826 36 H 0.171 0.829 37 H 0.169 0.831 38 H 0.136 0.864 39 H 0.151 0.849 40 H 0.116 0.884 41 H 0.111 0.889 42 H 0.059 0.941 43 H 0.054 0.946 44 H 0.042 0.958 45 H 0.066 0.934 46 H 0.029 0.971 47 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -18.134 10.542 12.369 24.351 hybrid contribution -0.949 -1.379 -0.383 1.718 sum -19.083 9.163 11.986 24.326 Atomic orbital electron populations 1.22251 0.89411 1.04027 1.05786 1.22207 0.97648 0.96382 0.81813 0.87404 1.86171 1.81852 1.38042 1.17543 1.19463 0.96784 0.91568 0.86426 1.21527 1.07480 0.92898 1.01653 1.21371 0.96167 1.00643 0.91561 1.21494 1.01109 0.95335 0.99884 1.21296 0.97289 0.94453 0.96928 1.20706 1.04817 1.01650 0.92599 1.20235 0.79360 0.84439 0.83800 1.90722 1.42310 1.26503 1.86340 1.49578 1.55329 1.28616 1.03606 1.23509 0.97993 0.87484 0.92371 1.22591 0.95940 0.92415 1.01096 0.84422 1.21871 0.94063 0.99016 0.99522 1.20937 0.97186 0.84550 0.94409 1.43688 1.10563 1.11276 1.67424 1.19935 0.87422 1.30809 1.10199 0.96839 1.27007 1.00770 0.99057 0.99078 1.70892 1.34151 1.49679 1.02392 0.82995 0.73746 0.76728 0.73559 1.21232 1.21202 1.20077 1.20267 0.87690 0.93226 0.97085 1.22639 0.96977 0.98514 0.80472 0.86539 0.87406 0.92235 0.88976 0.83748 0.82582 0.82857 0.83073 0.86409 0.84873 0.88353 0.88904 0.94090 0.94572 0.95837 0.93375 0.97082 0.95648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 9.16 71.98 0.66 -2.27 16 2 C 0.08 2.27 2.49 29.85 0.07 2.34 16 3 H 0.11 2.69 6.14 -2.39 -0.01 2.68 16 4 O -0.32 -11.40 9.33 -73.49 -0.69 -12.09 16 5 C 0.10 3.00 6.62 22.51 0.15 3.15 16 6 C -0.22 -4.77 8.35 22.37 0.19 -4.58 16 7 C -0.08 -1.37 10.04 22.25 0.22 -1.15 16 8 C -0.16 -2.70 10.04 22.28 0.22 -2.48 16 9 C -0.08 -1.66 10.04 22.25 0.22 -1.44 16 10 C -0.18 -4.92 9.99 22.37 0.22 -4.70 16 11 C 0.53 20.44 7.36 87.66 0.65 21.08 16 12 O -0.58 -30.13 15.75 15.97 0.25 -29.87 16 13 N -0.64 -19.67 3.24 -877.02 -2.84 -22.51 16 14 C 0.11 1.85 6.50 80.66 0.52 2.38 16 15 C -0.10 -2.44 4.47 -11.00 -0.05 -2.49 16 16 H 0.14 2.28 8.14 -2.39 -0.02 2.26 16 17 C -0.11 -3.44 5.72 30.94 0.18 -3.27 16 18 C 0.15 7.14 4.75 86.69 0.41 7.55 16 19 N -0.61 -32.58 2.77 -705.60 -1.95 -34.53 16 20 C -0.35 -22.26 9.34 84.03 0.78 -21.48 16 21 H 0.01 0.95 7.92 -2.91 -0.02 0.93 16 22 C -0.06 -3.76 4.63 84.86 0.39 -3.37 16 23 N -0.93 -58.48 12.55 21.65 0.27 -58.21 16 24 Si 1.10 56.02 29.98 68.60 2.06 58.08 16 25 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 26 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 27 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 28 C 0.14 6.76 6.15 85.92 0.53 7.29 16 29 C 0.12 3.80 4.10 38.72 0.16 3.96 16 30 H 0.12 2.94 8.14 -2.38 -0.02 2.92 16 31 H 0.11 1.31 6.87 -2.39 -0.02 1.29 16 32 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.09 1.37 7.19 -2.38 -0.02 1.36 16 34 H 0.14 2.52 5.54 -2.91 -0.02 2.50 16 35 H 0.16 1.63 8.06 -2.91 -0.02 1.61 16 36 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 37 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 38 H 0.12 3.37 8.06 -2.91 -0.02 3.35 16 39 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.10 1.33 8.01 -2.39 -0.02 1.31 16 41 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 42 H 0.04 1.50 7.64 -2.39 -0.02 1.48 16 43 H 0.04 1.93 6.47 -2.39 -0.02 1.92 16 44 H 0.02 1.08 7.95 -2.39 -0.02 1.06 16 45 H 0.26 16.24 6.95 -92.71 -0.64 15.59 16 46 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 47 H 0.02 1.40 6.49 -2.39 -0.02 1.39 16 Total: -1.00 -91.04 372.94 3.73 -87.31 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: 1.09 Total: 11.30 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: 5.54 Total: 0.52 kcal Atomic # 7 Polarization: -110.73 SS G_CDS: -4.52 Total: -115.25 kcal Atomic # 8 Polarization: -41.53 SS G_CDS: -0.43 Total: -41.96 kcal Atomic # 14 Polarization: 56.02 SS G_CDS: 2.06 Total: 58.08 kcal Total: -91.04 3.73 -87.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084811248.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.957 kcal (2) G-P(sol) polarization free energy of solvation -91.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds