Wall clock time and date at job start Tue Mar 31 2020 16:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47215 * 2 1 4 4 O 1.42898 * 109.47452 * 239.99402 * 2 1 3 5 5 C 1.35899 * 116.99796 * 88.79969 * 4 2 1 6 6 C 1.38734 * 120.05885 * 174.03771 * 5 4 2 7 7 C 1.38147 * 119.94746 * 179.74657 * 6 5 4 8 8 C 1.38264 * 120.05147 * 0.50726 * 7 6 5 9 9 C 1.38267 * 120.11281 * 359.76567 * 8 7 6 10 10 C 1.38139 * 120.05534 * 359.97438 * 9 8 7 11 11 C 1.50704 * 109.47177 * 119.99520 * 2 1 3 12 12 O 1.21275 * 119.99969 * 114.99774 * 11 2 1 13 13 N 1.34774 * 120.00089 * 295.00667 * 11 2 1 14 14 C 1.47813 * 135.01264 * 359.96242 * 13 11 2 15 15 C 1.54651 * 85.79340 * 153.83112 * 14 13 11 16 16 H 1.08997 * 114.43899 * 139.84168 * 15 14 13 17 17 C 1.53012 * 111.41381 * 270.18039 * 15 14 13 18 18 C 1.51534 * 110.10303 * 143.24578 * 17 15 14 19 19 N 1.46622 * 108.51203 * 301.88955 * 18 17 15 20 20 C 1.36941 * 119.88702 * 236.94733 * 19 18 17 21 21 H 1.08001 * 119.99889 * 151.40563 * 20 19 18 22 22 C 1.38809 * 119.99886 * 331.40181 * 20 19 18 23 23 N 1.31610 * 120.00168 * 331.36091 * 22 20 19 24 24 Si 1.86799 * 119.99696 * 151.35958 * 22 20 19 25 25 H 1.48497 * 109.47594 * 359.97438 * 24 22 20 26 26 H 1.48508 * 109.46994 * 239.99906 * 24 22 20 27 27 H 1.48496 * 109.47357 * 120.00315 * 24 22 20 28 28 C 1.45672 * 120.22095 * 56.67331 * 19 18 17 29 29 C 1.46821 * 135.01549 * 179.97438 * 13 11 2 30 30 H 1.09002 * 110.90578 * 94.52015 * 29 13 11 31 31 H 1.09000 * 109.46878 * 60.00555 * 1 2 3 32 32 H 1.09006 * 109.47266 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47526 * 300.00177 * 1 2 3 34 34 H 1.08004 * 120.02409 * 359.97438 * 6 5 4 35 35 H 1.07995 * 119.97424 * 180.27801 * 7 6 5 36 36 H 1.08002 * 119.94140 * 179.75071 * 8 7 6 37 37 H 1.08004 * 119.97022 * 179.97438 * 9 8 7 38 38 H 1.08003 * 120.02350 * 180.02562 * 10 9 8 39 39 H 1.09006 * 113.81421 * 39.61579 * 14 13 11 40 40 H 1.08996 * 113.93344 * 268.06698 * 14 13 11 41 41 H 1.09003 * 109.47562 * 264.16935 * 17 15 14 42 42 H 1.09001 * 109.47741 * 24.18806 * 17 15 14 43 43 H 1.08994 * 109.81612 * 181.91946 * 18 17 15 44 44 H 1.09000 * 109.19055 * 61.48743 * 18 17 15 45 45 H 0.96996 * 120.00341 * 355.79688 * 23 22 20 46 46 H 1.09003 * 108.71670 * 82.02097 * 28 19 18 47 47 H 1.09001 * 108.71825 * 200.04120 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.1882 0.0795 -2.2831 6 6 2.7641 -0.4814 -3.4137 7 6 2.9430 0.2850 -4.5491 8 6 2.5582 1.6130 -4.5557 9 6 1.9891 2.1759 -3.4284 10 6 1.8032 1.4123 -2.2924 11 6 2.0324 -0.7103 1.2305 12 8 2.6529 -1.7466 1.1217 13 7 1.7918 -0.1941 2.4520 14 6 1.0959 1.0065 2.9611 15 6 0.8705 0.1881 4.2538 16 1 0.9912 0.7580 5.1751 17 6 -0.4389 -0.6014 4.1939 18 6 -0.2671 -1.9469 4.8693 19 7 0.8182 -2.6693 4.1985 20 6 0.5834 -3.9058 3.6587 21 1 1.1599 -4.2427 2.8099 22 6 -0.3954 -4.7260 4.2026 23 7 -0.6986 -4.6310 5.4798 24 14 -1.2824 -5.9647 3.1218 25 1 -0.7617 -5.8733 1.7341 26 1 -2.7381 -5.6709 3.1241 27 1 -1.0531 -7.3344 3.6478 28 6 2.1439 -2.0736 4.0991 29 6 2.1125 -0.5910 3.8287 30 1 3.0272 -0.1063 4.1702 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 3.0690 -1.5175 -3.4074 35 1 3.3872 -0.1525 -5.4309 36 1 2.7025 2.2116 -5.4430 37 1 1.6897 3.2136 -3.4360 38 1 1.3582 1.8525 -1.4122 39 1 0.1773 1.2436 2.4242 40 1 1.7461 1.8710 3.0950 41 1 -1.2276 -0.0353 4.6897 42 1 -0.7133 -0.7718 3.1528 43 1 -1.1919 -2.5188 4.7942 44 1 -0.0133 -1.7917 5.9179 45 1 -0.1968 -4.0316 6.0541 46 1 2.6765 -2.2476 5.0341 47 1 2.6885 -2.5648 3.2928 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084811249.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:12:13 Heat of formation + Delta-G solvation = 24.668515 kcal Electronic energy + Delta-G solvation = -29251.432116 eV Core-core repulsion = 25401.930052 eV Total energy + Delta-G solvation = -3849.502064 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.94765 -40.21013 -38.24247 -37.00570 -35.56545 -32.63587 -31.69593 -31.07227 -30.95935 -29.82835 -28.59337 -26.97414 -24.73800 -23.79709 -23.33238 -22.79476 -22.04573 -21.15566 -19.79587 -18.56428 -17.88414 -17.43789 -16.69956 -16.31925 -15.91186 -15.66964 -15.47980 -15.15232 -14.56370 -14.27394 -14.13053 -13.65043 -13.58455 -13.50793 -13.47821 -13.22631 -13.05186 -12.64833 -12.56263 -12.36983 -12.00960 -11.90041 -11.76977 -11.69931 -11.21410 -11.14012 -10.88447 -10.81344 -10.66048 -10.50383 -10.08923 -9.97493 -9.93785 -9.38144 -9.21237 -9.09575 -8.45711 -8.34345 -8.21715 -6.79994 -6.04594 -3.13572 1.12956 1.25827 2.50550 2.86279 3.41149 3.57123 3.58323 3.60108 3.75875 4.31579 4.49512 4.54341 4.65466 4.66505 4.72725 4.82527 4.93101 5.02913 5.09506 5.16737 5.20650 5.27046 5.31362 5.38716 5.45044 5.48323 5.57250 5.59797 5.71487 5.80739 5.84189 5.87475 6.04061 6.07932 6.14923 6.19626 6.32077 6.32466 6.44018 6.49098 6.57657 6.70740 6.88285 7.03847 7.18913 7.28289 7.95287 8.20361 8.44012 8.66653 9.21210 9.93786 10.33285 11.26395 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.014719 B = 0.003545 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.782653 B = 7895.985770 C = 8988.941345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.075 3.925 3 H 0.092 0.908 4 O -0.282 6.282 5 C 0.136 3.864 6 C -0.151 4.151 7 C -0.080 4.080 8 C -0.164 4.164 9 C -0.080 4.080 10 C -0.215 4.215 11 C 0.541 3.459 12 O -0.506 6.506 13 N -0.628 5.628 14 C 0.090 3.910 15 C -0.105 4.105 16 H 0.090 0.910 17 C -0.119 4.119 18 C 0.150 3.850 19 N -0.588 5.588 20 C -0.344 4.344 21 H 0.056 0.944 22 C -0.023 4.023 23 N -0.914 5.914 24 Si 1.062 2.938 25 H -0.291 1.291 26 H -0.291 1.291 27 H -0.294 1.294 28 C 0.143 3.857 29 C 0.136 3.864 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.133 0.867 35 H 0.128 0.872 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.128 0.872 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.058 0.942 42 H 0.061 0.939 43 H 0.083 0.917 44 H 0.016 0.984 45 H 0.268 0.732 46 H 0.018 0.982 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.242 19.063 -12.556 23.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.015 3.985 3 H 0.109 0.891 4 O -0.194 6.194 5 C 0.090 3.910 6 C -0.170 4.170 7 C -0.098 4.098 8 C -0.183 4.183 9 C -0.098 4.098 10 C -0.234 4.234 11 C 0.328 3.672 12 O -0.380 6.380 13 N -0.366 5.366 14 C -0.033 4.033 15 C -0.124 4.124 16 H 0.108 0.892 17 C -0.159 4.159 18 C 0.024 3.976 19 N -0.311 5.311 20 C -0.473 4.473 21 H 0.074 0.926 22 C -0.225 4.225 23 N -0.554 5.554 24 Si 0.892 3.108 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.221 1.221 28 C 0.016 3.984 29 C 0.032 3.968 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.150 0.850 35 H 0.146 0.854 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.146 0.854 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.101 0.899 44 H 0.034 0.966 45 H 0.079 0.921 46 H 0.035 0.965 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.483 16.999 -12.847 21.452 hybrid contribution 1.236 1.558 0.017 1.989 sum 3.719 18.558 -12.830 22.865 Atomic orbital electron populations 1.22322 0.92492 1.05017 1.03251 1.22156 0.95948 0.96389 0.84044 0.89059 1.86261 1.80564 1.35544 1.17064 1.19160 0.94516 0.90075 0.87277 1.20532 1.03295 1.01491 0.91634 1.20978 0.97888 0.93840 0.97114 1.21048 1.02784 0.95647 0.98783 1.20925 0.97100 0.99379 0.92439 1.21300 1.07625 0.93921 1.00506 1.19476 0.80050 0.85383 0.82260 1.90750 1.39588 1.22477 1.85159 1.49686 1.57045 1.25365 1.04534 1.23713 0.96435 0.89271 0.93900 1.22852 0.96730 0.96270 0.96564 0.89210 1.21638 0.93699 0.98274 1.02243 1.20523 0.93930 0.90054 0.93100 1.43552 1.03670 1.16732 1.67151 1.20014 1.23233 0.92982 1.11072 0.92644 1.25736 1.00087 0.99485 0.97148 1.70737 1.44934 1.36820 1.02956 0.83579 0.76343 0.75791 0.75048 1.21759 1.21758 1.22130 1.20161 0.89365 0.89494 0.99396 1.22421 0.96959 0.99078 0.78300 0.90441 0.91103 0.90164 0.90155 0.84950 0.85372 0.86024 0.85878 0.85388 0.90120 0.89984 0.92380 0.92038 0.89863 0.96588 0.92143 0.96473 0.90849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 9.20 37.16 0.34 -1.86 16 2 C 0.07 1.08 2.42 -27.88 -0.07 1.01 16 3 H 0.09 1.06 6.07 -51.93 -0.32 0.74 16 4 O -0.28 -4.65 9.32 -39.28 -0.37 -5.02 16 5 C 0.14 1.84 6.64 -39.22 -0.26 1.58 16 6 C -0.15 -1.86 9.99 -39.43 -0.39 -2.25 16 7 C -0.08 -0.78 10.04 -39.61 -0.40 -1.18 16 8 C -0.16 -1.48 10.04 -39.56 -0.40 -1.87 16 9 C -0.08 -0.74 10.04 -39.61 -0.40 -1.14 16 10 C -0.21 -2.36 8.44 -39.44 -0.33 -2.69 16 11 C 0.54 10.04 7.34 -10.98 -0.08 9.96 16 12 O -0.51 -11.98 15.62 -14.30 -0.22 -12.20 16 13 N -0.63 -10.16 3.34 -173.99 -0.58 -10.74 16 14 C 0.09 1.02 7.66 -3.00 -0.02 1.00 16 15 C -0.10 -1.48 4.38 -89.98 -0.39 -1.87 16 16 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 17 C -0.12 -2.04 5.60 -27.47 -0.15 -2.19 16 18 C 0.15 3.38 4.69 -4.72 -0.02 3.35 16 19 N -0.59 -14.89 2.85 -176.03 -0.50 -15.40 16 20 C -0.34 -10.03 9.38 -15.06 -0.14 -10.17 16 21 H 0.06 1.74 7.93 -52.49 -0.42 1.32 16 22 C -0.02 -0.66 4.54 -17.44 -0.08 -0.74 16 23 N -0.91 -27.55 12.46 55.49 0.69 -26.85 16 24 Si 1.06 26.46 30.00 -169.99 -5.10 21.36 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 28 C 0.14 3.18 6.17 -5.62 -0.03 3.15 16 29 C 0.14 2.30 4.23 -69.61 -0.29 2.01 16 30 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.07 0.75 7.34 -51.93 -0.38 0.37 16 32 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.08 0.89 5.64 -51.93 -0.29 0.60 16 34 H 0.13 1.59 8.06 -52.48 -0.42 1.17 16 35 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 36 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 37 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 38 H 0.13 1.19 5.58 -52.48 -0.29 0.90 16 39 H 0.08 0.80 5.90 -51.93 -0.31 0.49 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.06 1.14 7.75 -51.93 -0.40 0.74 16 43 H 0.08 2.14 6.22 -51.93 -0.32 1.82 16 44 H 0.02 0.36 8.05 -51.93 -0.42 -0.06 16 45 H 0.27 8.10 7.09 -40.82 -0.29 7.81 16 46 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.07 1.86 6.32 -51.93 -0.33 1.53 16 LS Contribution 370.68 15.07 5.59 5.59 Total: -1.00 -35.52 370.68 -10.41 -45.93 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -6.79 Total: 1.25 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -3.13 Total: -3.92 kcal Atomic # 7 Polarization: -52.60 SS G_CDS: -0.39 Total: -52.99 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.59 Total: -17.22 kcal Atomic # 14 Polarization: 26.46 SS G_CDS: -5.10 Total: 21.36 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.52 -10.41 -45.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084811249.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.600 kcal (2) G-P(sol) polarization free energy of solvation -35.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds