Wall clock time and date at job start Tue Mar 31 2020 16:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47215 * 2 1 4 4 O 1.42898 * 109.47452 * 239.99402 * 2 1 3 5 5 C 1.35899 * 116.99796 * 88.79969 * 4 2 1 6 6 C 1.38734 * 120.05885 * 174.03771 * 5 4 2 7 7 C 1.38147 * 119.94746 * 179.74657 * 6 5 4 8 8 C 1.38264 * 120.05147 * 0.50726 * 7 6 5 9 9 C 1.38267 * 120.11281 * 359.76567 * 8 7 6 10 10 C 1.38139 * 120.05534 * 359.97438 * 9 8 7 11 11 C 1.50704 * 109.47177 * 119.99520 * 2 1 3 12 12 O 1.21275 * 119.99969 * 114.99774 * 11 2 1 13 13 N 1.34774 * 120.00089 * 295.00667 * 11 2 1 14 14 C 1.47813 * 135.01264 * 359.96242 * 13 11 2 15 15 C 1.54651 * 85.79340 * 153.83112 * 14 13 11 16 16 H 1.08997 * 114.43899 * 139.84168 * 15 14 13 17 17 C 1.53012 * 111.41381 * 270.18039 * 15 14 13 18 18 C 1.51534 * 110.10303 * 143.24578 * 17 15 14 19 19 N 1.46622 * 108.51203 * 301.88955 * 18 17 15 20 20 C 1.36941 * 119.88702 * 236.94733 * 19 18 17 21 21 H 1.08001 * 119.99889 * 151.40563 * 20 19 18 22 22 C 1.38809 * 119.99886 * 331.40181 * 20 19 18 23 23 N 1.31610 * 120.00168 * 331.36091 * 22 20 19 24 24 Si 1.86799 * 119.99696 * 151.35958 * 22 20 19 25 25 H 1.48497 * 109.47594 * 359.97438 * 24 22 20 26 26 H 1.48508 * 109.46994 * 239.99906 * 24 22 20 27 27 H 1.48496 * 109.47357 * 120.00315 * 24 22 20 28 28 C 1.45672 * 120.22095 * 56.67331 * 19 18 17 29 29 C 1.46821 * 135.01549 * 179.97438 * 13 11 2 30 30 H 1.09002 * 110.90578 * 94.52015 * 29 13 11 31 31 H 1.09000 * 109.46878 * 60.00555 * 1 2 3 32 32 H 1.09006 * 109.47266 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47526 * 300.00177 * 1 2 3 34 34 H 1.08004 * 120.02409 * 359.97438 * 6 5 4 35 35 H 1.07995 * 119.97424 * 180.27801 * 7 6 5 36 36 H 1.08002 * 119.94140 * 179.75071 * 8 7 6 37 37 H 1.08004 * 119.97022 * 179.97438 * 9 8 7 38 38 H 1.08003 * 120.02350 * 180.02562 * 10 9 8 39 39 H 1.09006 * 113.81421 * 39.61579 * 14 13 11 40 40 H 1.08996 * 113.93344 * 268.06698 * 14 13 11 41 41 H 1.09003 * 109.47562 * 264.16935 * 17 15 14 42 42 H 1.09001 * 109.47741 * 24.18806 * 17 15 14 43 43 H 1.08994 * 109.81612 * 181.91946 * 18 17 15 44 44 H 1.09000 * 109.19055 * 61.48743 * 18 17 15 45 45 H 0.96996 * 120.00341 * 355.79688 * 23 22 20 46 46 H 1.09003 * 108.71670 * 82.02097 * 28 19 18 47 47 H 1.09001 * 108.71825 * 200.04120 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.1882 0.0795 -2.2831 6 6 2.7641 -0.4814 -3.4137 7 6 2.9430 0.2850 -4.5491 8 6 2.5582 1.6130 -4.5557 9 6 1.9891 2.1759 -3.4284 10 6 1.8032 1.4123 -2.2924 11 6 2.0324 -0.7103 1.2305 12 8 2.6529 -1.7466 1.1217 13 7 1.7918 -0.1941 2.4520 14 6 1.0959 1.0065 2.9611 15 6 0.8705 0.1881 4.2538 16 1 0.9912 0.7580 5.1751 17 6 -0.4389 -0.6014 4.1939 18 6 -0.2671 -1.9469 4.8693 19 7 0.8182 -2.6693 4.1985 20 6 0.5834 -3.9058 3.6587 21 1 1.1599 -4.2427 2.8099 22 6 -0.3954 -4.7260 4.2026 23 7 -0.6986 -4.6310 5.4798 24 14 -1.2824 -5.9647 3.1218 25 1 -0.7617 -5.8733 1.7341 26 1 -2.7381 -5.6709 3.1241 27 1 -1.0531 -7.3344 3.6478 28 6 2.1439 -2.0736 4.0991 29 6 2.1125 -0.5910 3.8287 30 1 3.0272 -0.1063 4.1702 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 3.0690 -1.5175 -3.4074 35 1 3.3872 -0.1525 -5.4309 36 1 2.7025 2.2116 -5.4430 37 1 1.6897 3.2136 -3.4360 38 1 1.3582 1.8525 -1.4122 39 1 0.1773 1.2436 2.4242 40 1 1.7461 1.8710 3.0950 41 1 -1.2276 -0.0353 4.6897 42 1 -0.7133 -0.7718 3.1528 43 1 -1.1919 -2.5188 4.7942 44 1 -0.0133 -1.7917 5.9179 45 1 -0.1968 -4.0316 6.0541 46 1 2.6765 -2.2476 5.0341 47 1 2.6885 -2.5648 3.2928 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084811249.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:12:12 Heat of formation + Delta-G solvation = 1.977903 kcal Electronic energy + Delta-G solvation = -29252.416055 eV Core-core repulsion = 25401.930052 eV Total energy + Delta-G solvation = -3850.486003 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.18056 -41.24423 -39.45269 -38.15711 -37.40412 -34.05204 -33.24819 -32.75126 -31.82296 -30.71240 -29.99242 -28.59917 -25.92627 -25.57236 -24.68341 -23.68584 -23.04327 -22.69233 -21.10159 -19.74552 -19.52316 -18.88907 -18.04485 -17.45149 -17.10703 -16.77792 -16.58718 -16.29447 -16.15907 -15.78070 -15.47157 -15.35498 -15.03490 -14.75304 -14.65711 -14.36926 -14.27125 -13.95989 -13.71901 -13.55436 -13.38566 -13.30862 -12.91111 -12.80390 -12.62511 -12.51147 -12.40333 -12.16763 -12.02584 -11.97653 -11.81813 -11.72055 -11.53264 -11.23245 -10.55926 -10.48538 -9.97668 -9.69772 -9.22151 -8.92794 -8.35102 -5.42545 0.36403 0.44612 1.38311 1.48215 1.52787 1.54964 1.75076 2.36345 2.56414 2.81954 3.09660 3.19451 3.35408 3.52491 3.56728 3.76520 3.85807 3.89927 3.97159 4.02348 4.19893 4.25135 4.27062 4.32635 4.43048 4.44557 4.50940 4.56773 4.59768 4.65780 4.67091 4.74410 4.85166 4.95044 4.99114 5.05603 5.06690 5.12045 5.13235 5.27097 5.34111 5.45425 5.56870 5.57623 5.82892 5.84028 6.36186 6.37191 6.70792 7.06654 7.10080 7.77952 8.13758 8.91064 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.014719 B = 0.003545 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.782653 B = 7895.985770 C = 8988.941345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.083 3.917 3 H 0.129 0.871 4 O -0.323 6.323 5 C 0.102 3.898 6 C -0.180 4.180 7 C -0.081 4.081 8 C -0.160 4.160 9 C -0.078 4.078 10 C -0.216 4.216 11 C 0.525 3.475 12 O -0.581 6.581 13 N -0.632 5.632 14 C 0.107 3.893 15 C -0.097 4.097 16 H 0.133 0.867 17 C -0.109 4.109 18 C 0.152 3.848 19 N -0.604 5.604 20 C -0.354 4.354 21 H 0.016 0.984 22 C -0.063 4.063 23 N -0.927 5.927 24 Si 1.107 2.893 25 H -0.294 1.294 26 H -0.273 1.273 27 H -0.285 1.285 28 C 0.144 3.856 29 C 0.122 3.878 30 H 0.111 0.889 31 H 0.096 0.904 32 H 0.039 0.961 33 H 0.102 0.898 34 H 0.116 0.884 35 H 0.150 0.850 36 H 0.153 0.847 37 H 0.158 0.842 38 H 0.148 0.852 39 H 0.105 0.895 40 H 0.132 0.868 41 H 0.096 0.904 42 H 0.043 0.957 43 H 0.044 0.956 44 H 0.015 0.985 45 H 0.257 0.743 46 H 0.011 0.989 47 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.070 24.212 -13.460 27.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.023 3.977 3 H 0.146 0.854 4 O -0.237 6.237 5 C 0.057 3.943 6 C -0.199 4.199 7 C -0.099 4.099 8 C -0.178 4.178 9 C -0.096 4.096 10 C -0.234 4.234 11 C 0.314 3.686 12 O -0.460 6.460 13 N -0.368 5.368 14 C -0.013 4.013 15 C -0.116 4.116 16 H 0.150 0.850 17 C -0.148 4.148 18 C 0.027 3.973 19 N -0.328 5.328 20 C -0.484 4.484 21 H 0.034 0.966 22 C -0.260 4.260 23 N -0.568 5.568 24 Si 0.933 3.067 25 H -0.221 1.221 26 H -0.199 1.199 27 H -0.211 1.211 28 C 0.018 3.982 29 C 0.019 3.981 30 H 0.129 0.871 31 H 0.115 0.885 32 H 0.058 0.942 33 H 0.121 0.879 34 H 0.134 0.866 35 H 0.168 0.832 36 H 0.171 0.829 37 H 0.176 0.824 38 H 0.165 0.835 39 H 0.123 0.877 40 H 0.150 0.850 41 H 0.114 0.886 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.033 0.967 45 H 0.066 0.934 46 H 0.028 0.972 47 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 1.290 22.231 -13.724 26.157 hybrid contribution 1.688 -0.049 0.283 1.712 sum 2.978 22.181 -13.442 26.107 Atomic orbital electron populations 1.22291 0.91190 1.03109 1.05562 1.22194 0.96623 0.97018 0.81833 0.85365 1.86214 1.81518 1.37593 1.18374 1.19487 0.96638 0.91480 0.86700 1.20706 1.04729 1.01477 0.92942 1.21282 0.97463 0.94406 0.96780 1.21495 1.01149 0.95238 0.99913 1.21378 0.95863 1.00759 0.91564 1.21529 1.07252 0.92636 1.02002 1.20418 0.79160 0.84843 0.84134 1.90711 1.43053 1.25815 1.86449 1.49899 1.56464 1.26954 1.03527 1.24036 0.97908 0.88376 0.91013 1.22836 0.92811 0.95864 1.00117 0.84965 1.21492 0.96996 0.95715 1.00615 1.20484 0.91098 0.92340 0.93417 1.43709 1.05638 1.16181 1.67296 1.19945 1.23372 0.95182 1.09908 0.96597 1.26913 1.00542 1.01006 0.97577 1.70842 1.45240 1.37450 1.03298 0.82960 0.76136 0.74304 0.73329 1.22063 1.19888 1.21104 1.20136 0.87445 0.93341 0.97315 1.22528 1.00485 0.95268 0.79864 0.87097 0.88486 0.94165 0.87941 0.86627 0.83184 0.82892 0.82449 0.83494 0.87720 0.85039 0.88573 0.93845 0.93717 0.96685 0.93357 0.97186 0.95418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.96 9.20 71.98 0.66 -3.30 16 2 C 0.08 2.35 2.42 29.85 0.07 2.42 16 3 H 0.13 2.58 6.07 -2.39 -0.01 2.57 16 4 O -0.32 -11.22 9.32 -73.42 -0.68 -11.90 16 5 C 0.10 2.78 6.64 22.51 0.15 2.93 16 6 C -0.18 -4.62 9.99 22.37 0.22 -4.39 16 7 C -0.08 -1.49 10.04 22.25 0.22 -1.26 16 8 C -0.16 -2.32 10.04 22.28 0.22 -2.10 16 9 C -0.08 -1.13 10.04 22.25 0.22 -0.91 16 10 C -0.22 -4.17 8.44 22.36 0.19 -3.98 16 11 C 0.53 20.06 7.34 87.66 0.64 20.70 16 12 O -0.58 -30.01 15.62 15.98 0.25 -29.76 16 13 N -0.63 -19.54 3.34 -822.79 -2.75 -22.29 16 14 C 0.11 1.85 7.66 86.34 0.66 2.51 16 15 C -0.10 -2.34 4.38 -10.32 -0.05 -2.38 16 16 H 0.13 2.22 8.14 -2.39 -0.02 2.20 16 17 C -0.11 -3.48 5.60 30.12 0.17 -3.31 16 18 C 0.15 6.94 4.69 85.88 0.40 7.35 16 19 N -0.60 -32.26 2.85 -710.85 -2.03 -34.29 16 20 C -0.35 -22.12 9.38 84.03 0.79 -21.33 16 21 H 0.02 1.11 7.93 -2.91 -0.02 1.09 16 22 C -0.06 -3.80 4.54 84.86 0.38 -3.42 16 23 N -0.93 -57.81 12.46 21.65 0.27 -57.54 16 24 Si 1.11 55.63 30.00 68.60 2.06 57.69 16 25 H -0.29 -14.76 7.11 99.48 0.71 -14.05 16 26 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 27 H -0.28 -13.82 7.11 99.48 0.71 -13.11 16 28 C 0.14 6.79 6.17 85.80 0.53 7.32 16 29 C 0.12 3.99 4.23 43.73 0.18 4.18 16 30 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16 31 H 0.10 1.80 7.34 -2.39 -0.02 1.79 16 32 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 33 H 0.10 1.93 5.64 -2.39 -0.01 1.91 16 34 H 0.12 3.16 8.06 -2.91 -0.02 3.14 16 35 H 0.15 1.93 8.06 -2.91 -0.02 1.90 16 36 H 0.15 1.26 8.06 -2.91 -0.02 1.24 16 37 H 0.16 1.21 8.06 -2.91 -0.02 1.18 16 38 H 0.15 2.13 5.58 -2.91 -0.02 2.11 16 39 H 0.10 1.40 5.90 -2.38 -0.01 1.38 16 40 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 42 H 0.04 1.54 7.75 -2.39 -0.02 1.52 16 43 H 0.04 2.37 6.22 -2.39 -0.01 2.35 16 44 H 0.02 0.68 8.05 -2.39 -0.02 0.67 16 45 H 0.26 16.18 7.09 -92.71 -0.66 15.52 16 46 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 47 H 0.03 1.53 6.32 -2.39 -0.02 1.52 16 Total: -1.00 -90.08 370.68 3.89 -86.19 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: 1.09 Total: 10.89 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: 5.68 Total: 1.01 kcal Atomic # 7 Polarization: -109.62 SS G_CDS: -4.51 Total: -114.13 kcal Atomic # 8 Polarization: -41.22 SS G_CDS: -0.43 Total: -41.66 kcal Atomic # 14 Polarization: 55.63 SS G_CDS: 2.06 Total: 57.69 kcal Total: -90.08 3.89 -86.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084811249.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.169 kcal (2) G-P(sol) polarization free energy of solvation -90.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds