Wall clock time and date at job start Tue Mar 31 2020 16:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.46912 * 2 1 4 4 O 1.42898 * 109.47417 * 239.99901 * 2 1 3 5 5 C 1.35905 * 116.99645 * 85.33715 * 4 2 1 6 6 C 1.38738 * 120.05512 * 174.26640 * 5 4 2 7 7 C 1.38139 * 119.94212 * 179.74162 * 6 5 4 8 8 C 1.38270 * 120.05636 * 0.50871 * 7 6 5 9 9 C 1.38259 * 120.11303 * 359.76790 * 8 7 6 10 10 C 1.38152 * 120.05654 * 359.97429 * 9 8 7 11 11 C 1.50700 * 109.47157 * 120.00193 * 2 1 3 12 12 O 1.21278 * 120.00277 * 120.00356 * 11 2 1 13 13 N 1.34776 * 119.99981 * 300.00321 * 11 2 1 14 14 C 1.46496 * 120.00340 * 179.97438 * 13 11 2 15 15 H 1.09001 * 110.55573 * 37.88503 * 14 13 11 16 16 C 1.58513 * 111.30889 * 161.40178 * 14 13 11 17 17 C 1.55850 * 102.75431 * 118.42125 * 16 14 13 18 18 H 1.09003 * 115.55993 * 159.32074 * 17 16 14 19 19 C 1.55842 * 105.06252 * 287.93271 * 17 16 14 20 20 C 1.54849 * 103.44727 * 72.57743 * 19 17 16 21 21 C 1.55843 * 110.62927 * 274.98526 * 14 13 11 22 22 H 1.08995 * 115.56021 * 81.77909 * 21 14 13 23 23 N 1.50231 * 101.75013 * 32.92666 * 17 16 14 24 24 C 1.36945 * 130.84096 * 126.55259 * 23 17 16 25 25 H 1.07996 * 120.00482 * 180.02562 * 24 23 17 26 26 C 1.38812 * 119.99663 * 0.02562 * 24 23 17 27 27 N 1.31624 * 120.00109 * 0.02562 * 26 24 23 28 28 Si 1.86795 * 120.00066 * 179.97438 * 26 24 23 29 29 H 1.48495 * 109.47273 * 0.02562 * 28 26 24 30 30 H 1.48511 * 109.47119 * 120.00146 * 28 26 24 31 31 H 1.48500 * 109.47337 * 240.00194 * 28 26 24 32 32 H 1.09005 * 109.46856 * 179.97438 * 1 2 3 33 33 H 1.08991 * 109.47244 * 299.99499 * 1 2 3 34 34 H 1.09001 * 109.46807 * 60.00043 * 1 2 3 35 35 H 1.08000 * 120.02551 * 359.97438 * 6 5 4 36 36 H 1.07997 * 119.97299 * 180.27152 * 7 6 5 37 37 H 1.08000 * 119.93987 * 179.74409 * 8 7 6 38 38 H 1.07996 * 119.97449 * 179.97438 * 9 8 7 39 39 H 1.07990 * 120.02739 * 180.02562 * 10 9 8 40 40 H 0.97004 * 119.99666 * 359.97438 * 13 11 2 41 41 H 1.09003 * 110.52061 * 0.36945 * 16 14 13 42 42 H 1.08993 * 111.39388 * 236.88797 * 16 14 13 43 43 H 1.09000 * 110.62284 * 191.06687 * 19 17 16 44 44 H 1.09005 * 110.63057 * 314.08130 * 19 17 16 45 45 H 1.09003 * 110.62464 * 118.48746 * 20 19 17 46 46 H 1.08997 * 110.62538 * 241.34658 * 20 19 17 47 47 H 0.96998 * 120.00484 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.1193 0.0644 -2.3023 6 6 2.6862 -0.4926 -3.4395 7 6 2.7949 0.2579 -4.5941 8 6 2.3489 1.5666 -4.6140 9 6 1.7888 2.1258 -3.4804 10 6 1.6729 1.3777 -2.3247 11 6 2.0324 -0.7104 1.2304 12 8 2.7297 -1.6965 1.1192 13 7 1.7067 -0.2501 2.4546 14 6 2.1946 -0.9410 3.6507 15 1 3.2135 -1.2969 3.4983 16 6 2.1114 -0.0076 4.9292 17 6 1.1310 -0.7843 5.8590 18 1 1.1849 -0.5289 6.9174 19 6 -0.2705 -0.6192 5.1979 20 6 -0.1892 -1.5311 3.9490 21 6 1.2505 -2.1229 4.0255 22 1 1.4095 -3.0464 3.4690 23 7 1.4466 -2.2116 5.5124 24 6 1.7910 -3.2714 6.3084 25 1 1.9836 -4.2380 5.8671 26 6 1.8924 -3.1031 7.6826 27 7 1.6571 -1.9250 8.2205 28 14 2.3613 -4.5488 8.7685 29 1 2.5710 -5.7533 7.9258 30 1 3.6146 -4.2325 9.4998 31 1 1.2718 -4.8096 9.7433 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5137 0.8899 34 1 -0.3633 0.5138 -0.8900 35 1 3.0388 -1.5133 -3.4231 36 1 3.2322 -0.1765 -5.4809 37 1 2.4386 2.1529 -5.5165 38 1 1.4415 3.1482 -3.4983 39 1 1.2350 1.8149 -1.4397 40 1 1.1493 0.5388 2.5435 41 1 1.6995 0.9664 4.6651 42 1 3.0858 0.1027 5.4050 43 1 -1.0558 -0.9609 5.8723 44 1 -0.4379 0.4176 4.9062 45 1 -0.9341 -2.3249 4.0041 46 1 -0.3190 -0.9469 3.0380 47 1 1.7283 -1.8073 9.1806 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110056629.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:40 Heat of formation + Delta-G solvation = 6.451680 kcal Electronic energy + Delta-G solvation = -28479.795679 eV Core-core repulsion = 24629.503673 eV Total energy + Delta-G solvation = -3850.292006 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.78550 -39.76652 -38.44949 -37.28317 -34.10853 -32.63452 -32.04804 -31.03384 -29.87750 -29.21000 -28.95410 -27.55961 -24.98897 -24.09411 -23.05730 -22.39961 -21.40054 -20.40080 -19.46202 -18.74005 -18.53286 -17.46735 -16.79200 -16.40023 -15.86471 -15.80683 -15.16770 -14.95187 -14.74186 -14.61647 -14.16236 -13.99865 -13.73810 -13.67439 -13.29749 -12.82574 -12.63097 -12.38924 -12.29437 -12.01925 -11.83673 -11.74961 -11.53916 -11.30335 -11.06079 -11.02248 -10.92443 -10.90073 -10.83618 -10.22530 -10.07641 -9.85362 -9.63174 -9.42283 -9.28656 -9.25863 -8.95874 -8.58127 -8.43331 -6.93368 -5.74460 -3.12507 1.06350 1.18769 2.54856 2.72400 3.38765 3.44871 3.46994 3.53279 3.59260 4.38838 4.44632 4.57404 4.62419 4.64748 4.74008 4.86186 5.09633 5.11689 5.18380 5.28381 5.34073 5.36693 5.40603 5.44149 5.73719 5.77647 5.80478 5.83661 5.91943 6.04371 6.05847 6.07772 6.13147 6.25789 6.26307 6.30994 6.48749 6.50091 6.57038 6.61264 6.78143 6.91957 6.96491 7.17160 7.23929 7.51264 7.66320 7.77936 8.14835 8.37709 9.09145 9.71496 10.51395 11.35202 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.030109 B = 0.002443 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.718550 B =11460.899657 C =11887.609401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.066 3.934 3 H 0.097 0.903 4 O -0.283 6.283 5 C 0.134 3.866 6 C -0.151 4.151 7 C -0.081 4.081 8 C -0.163 4.163 9 C -0.080 4.080 10 C -0.214 4.214 11 C 0.513 3.487 12 O -0.517 6.517 13 N -0.706 5.706 14 C 0.126 3.874 15 H 0.083 0.917 16 C -0.137 4.137 17 C 0.153 3.847 18 H 0.154 0.846 19 C -0.137 4.137 20 C -0.131 4.131 21 C 0.128 3.872 22 H 0.085 0.915 23 N -0.588 5.588 24 C -0.208 4.208 25 H 0.080 0.920 26 C -0.013 4.013 27 N -0.924 5.924 28 Si 0.917 3.083 29 H -0.280 1.280 30 H -0.291 1.291 31 H -0.291 1.291 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.132 0.868 36 H 0.128 0.872 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.130 0.870 40 H 0.395 0.605 41 H 0.054 0.946 42 H 0.067 0.933 43 H 0.055 0.945 44 H 0.044 0.956 45 H 0.050 0.950 46 H 0.050 0.950 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.902 11.587 -20.873 24.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.006 3.994 3 H 0.114 0.886 4 O -0.195 6.195 5 C 0.088 3.912 6 C -0.169 4.169 7 C -0.099 4.099 8 C -0.181 4.181 9 C -0.098 4.098 10 C -0.232 4.232 11 C 0.297 3.703 12 O -0.392 6.392 13 N -0.358 5.358 14 C 0.020 3.980 15 H 0.101 0.899 16 C -0.176 4.176 17 C 0.046 3.954 18 H 0.171 0.829 19 C -0.177 4.177 20 C -0.171 4.171 21 C 0.019 3.981 22 H 0.103 0.897 23 N -0.309 5.309 24 C -0.336 4.336 25 H 0.098 0.902 26 C -0.208 4.208 27 N -0.572 5.572 28 Si 0.748 3.252 29 H -0.205 1.205 30 H -0.218 1.218 31 H -0.218 1.218 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.150 0.850 36 H 0.146 0.854 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.148 0.852 40 H 0.229 0.771 41 H 0.073 0.927 42 H 0.086 0.914 43 H 0.074 0.926 44 H 0.063 0.937 45 H 0.069 0.931 46 H 0.069 0.931 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.258 10.465 -20.598 23.214 hybrid contribution -0.189 -0.066 0.561 0.596 sum -2.447 10.398 -20.037 22.707 Atomic orbital electron populations 1.22345 0.92641 1.04692 1.03669 1.22261 0.95734 0.96982 0.84394 0.88584 1.86240 1.80774 1.36714 1.15799 1.19133 0.94854 0.90320 0.86876 1.20513 1.03496 1.01607 0.91316 1.20982 0.97812 0.93995 0.97078 1.21061 1.02453 0.95873 0.98746 1.20945 0.97203 0.99376 0.92322 1.21330 1.07292 0.94329 1.00295 1.19940 0.81175 0.85206 0.84022 1.90750 1.36822 1.25335 1.86296 1.46032 1.52988 1.31567 1.05223 1.23327 0.98671 0.93900 0.82089 0.89903 1.23883 1.02059 0.96314 0.95392 1.23731 0.88532 0.83022 1.00110 0.82893 1.23066 1.01077 0.96579 0.96954 1.22927 0.98435 0.98758 0.96931 1.23152 0.92785 0.94977 0.87153 0.89703 1.46443 1.78544 1.06547 0.99324 1.19119 1.38168 0.88474 0.87879 0.90211 1.24702 1.02573 0.97212 0.96330 1.69442 1.56081 1.21229 1.10472 0.85948 0.77649 0.81242 0.80385 1.20523 1.21770 1.21814 0.90415 0.90097 0.90828 0.85006 0.85387 0.86011 0.85829 0.85238 0.77078 0.92722 0.91399 0.92649 0.93693 0.93089 0.93146 0.93614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.58 9.08 37.16 0.34 -1.24 16 2 C 0.07 0.76 2.64 -27.88 -0.07 0.69 16 3 H 0.10 0.87 6.29 -51.93 -0.33 0.54 16 4 O -0.28 -3.91 9.33 -39.35 -0.37 -4.28 16 5 C 0.13 1.56 6.60 -39.21 -0.26 1.30 16 6 C -0.15 -1.61 9.99 -39.43 -0.39 -2.00 16 7 C -0.08 -0.69 10.04 -39.61 -0.40 -1.08 16 8 C -0.16 -1.29 10.04 -39.56 -0.40 -1.68 16 9 C -0.08 -0.65 10.04 -39.61 -0.40 -1.05 16 10 C -0.21 -2.00 8.26 -39.43 -0.33 -2.33 16 11 C 0.51 7.84 7.22 -10.99 -0.08 7.76 16 12 O -0.52 -10.46 16.24 -14.35 -0.23 -10.70 16 13 N -0.71 -9.91 3.56 -49.43 -0.18 -10.09 16 14 C 0.13 2.29 3.18 -63.37 -0.20 2.09 16 15 H 0.08 1.72 7.73 -51.93 -0.40 1.32 16 16 C -0.14 -2.49 6.41 -22.16 -0.14 -2.64 16 17 C 0.15 3.35 4.67 -62.80 -0.29 3.06 16 18 H 0.15 3.87 5.52 -51.93 -0.29 3.58 16 19 C -0.14 -2.56 6.44 -24.24 -0.16 -2.72 16 20 C -0.13 -2.35 6.32 -24.24 -0.15 -2.50 16 21 C 0.13 2.67 5.29 -62.80 -0.33 2.34 16 22 H 0.08 1.87 8.14 -51.93 -0.42 1.45 16 23 N -0.59 -14.50 3.00 -145.82 -0.44 -14.94 16 24 C -0.21 -5.73 10.59 -15.06 -0.16 -5.89 16 25 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 26 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 27 N -0.92 -25.97 10.47 55.49 0.58 -25.39 16 28 Si 0.92 22.01 29.55 -169.99 -5.02 16.98 16 29 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 30 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 31 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.08 0.58 7.56 -51.93 -0.39 0.18 16 34 H 0.07 0.56 6.95 -51.93 -0.36 0.20 16 35 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 36 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 37 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 38 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16 39 H 0.13 0.98 5.44 -52.49 -0.29 0.69 16 40 H 0.39 4.27 7.54 -40.82 -0.31 3.96 16 41 H 0.05 0.81 7.42 -51.93 -0.39 0.43 16 42 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.04 0.69 7.79 -51.93 -0.40 0.29 16 45 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.05 0.75 6.48 -51.93 -0.34 0.41 16 47 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 373.59 15.07 5.63 5.63 Total: -1.00 -32.45 373.59 -10.39 -42.83 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -6.84 Total: 6.29 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -3.52 Total: -6.35 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: -0.03 Total: -50.42 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -0.60 Total: -14.97 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.45 -10.39 -42.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110056629.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.284 kcal (2) G-P(sol) polarization free energy of solvation -32.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds