Wall clock time and date at job start Tue Mar 31 2020 16:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.46912 * 2 1 4 4 O 1.42898 * 109.47417 * 239.99901 * 2 1 3 5 5 C 1.35905 * 116.99645 * 85.33715 * 4 2 1 6 6 C 1.38738 * 120.05512 * 174.26640 * 5 4 2 7 7 C 1.38139 * 119.94212 * 179.74162 * 6 5 4 8 8 C 1.38270 * 120.05636 * 0.50871 * 7 6 5 9 9 C 1.38259 * 120.11303 * 359.76790 * 8 7 6 10 10 C 1.38152 * 120.05654 * 359.97429 * 9 8 7 11 11 C 1.50700 * 109.47157 * 120.00193 * 2 1 3 12 12 O 1.21278 * 120.00277 * 120.00356 * 11 2 1 13 13 N 1.34776 * 119.99981 * 300.00321 * 11 2 1 14 14 C 1.46496 * 120.00340 * 179.97438 * 13 11 2 15 15 H 1.09001 * 110.55573 * 37.88503 * 14 13 11 16 16 C 1.58513 * 111.30889 * 161.40178 * 14 13 11 17 17 C 1.55850 * 102.75431 * 118.42125 * 16 14 13 18 18 H 1.09003 * 115.55993 * 159.32074 * 17 16 14 19 19 C 1.55842 * 105.06252 * 287.93271 * 17 16 14 20 20 C 1.54849 * 103.44727 * 72.57743 * 19 17 16 21 21 C 1.55843 * 110.62927 * 274.98526 * 14 13 11 22 22 H 1.08995 * 115.56021 * 81.77909 * 21 14 13 23 23 N 1.50231 * 101.75013 * 32.92666 * 17 16 14 24 24 C 1.36945 * 130.84096 * 126.55259 * 23 17 16 25 25 H 1.07996 * 120.00482 * 180.02562 * 24 23 17 26 26 C 1.38812 * 119.99663 * 0.02562 * 24 23 17 27 27 N 1.31624 * 120.00109 * 0.02562 * 26 24 23 28 28 Si 1.86795 * 120.00066 * 179.97438 * 26 24 23 29 29 H 1.48495 * 109.47273 * 0.02562 * 28 26 24 30 30 H 1.48511 * 109.47119 * 120.00146 * 28 26 24 31 31 H 1.48500 * 109.47337 * 240.00194 * 28 26 24 32 32 H 1.09005 * 109.46856 * 179.97438 * 1 2 3 33 33 H 1.08991 * 109.47244 * 299.99499 * 1 2 3 34 34 H 1.09001 * 109.46807 * 60.00043 * 1 2 3 35 35 H 1.08000 * 120.02551 * 359.97438 * 6 5 4 36 36 H 1.07997 * 119.97299 * 180.27152 * 7 6 5 37 37 H 1.08000 * 119.93987 * 179.74409 * 8 7 6 38 38 H 1.07996 * 119.97449 * 179.97438 * 9 8 7 39 39 H 1.07990 * 120.02739 * 180.02562 * 10 9 8 40 40 H 0.97004 * 119.99666 * 359.97438 * 13 11 2 41 41 H 1.09003 * 110.52061 * 0.36945 * 16 14 13 42 42 H 1.08993 * 111.39388 * 236.88797 * 16 14 13 43 43 H 1.09000 * 110.62284 * 191.06687 * 19 17 16 44 44 H 1.09005 * 110.63057 * 314.08130 * 19 17 16 45 45 H 1.09003 * 110.62464 * 118.48746 * 20 19 17 46 46 H 1.08997 * 110.62538 * 241.34658 * 20 19 17 47 47 H 0.96998 * 120.00484 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.1193 0.0644 -2.3023 6 6 2.6862 -0.4926 -3.4395 7 6 2.7949 0.2579 -4.5941 8 6 2.3489 1.5666 -4.6140 9 6 1.7888 2.1258 -3.4804 10 6 1.6729 1.3777 -2.3247 11 6 2.0324 -0.7104 1.2304 12 8 2.7297 -1.6965 1.1192 13 7 1.7067 -0.2501 2.4546 14 6 2.1946 -0.9410 3.6507 15 1 3.2135 -1.2969 3.4983 16 6 2.1114 -0.0076 4.9292 17 6 1.1310 -0.7843 5.8590 18 1 1.1849 -0.5289 6.9174 19 6 -0.2705 -0.6192 5.1979 20 6 -0.1892 -1.5311 3.9490 21 6 1.2505 -2.1229 4.0255 22 1 1.4095 -3.0464 3.4690 23 7 1.4466 -2.2116 5.5124 24 6 1.7910 -3.2714 6.3084 25 1 1.9836 -4.2380 5.8671 26 6 1.8924 -3.1031 7.6826 27 7 1.6571 -1.9250 8.2205 28 14 2.3613 -4.5488 8.7685 29 1 2.5710 -5.7533 7.9258 30 1 3.6146 -4.2325 9.4998 31 1 1.2718 -4.8096 9.7433 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5137 0.8899 34 1 -0.3633 0.5138 -0.8900 35 1 3.0388 -1.5133 -3.4231 36 1 3.2322 -0.1765 -5.4809 37 1 2.4386 2.1529 -5.5165 38 1 1.4415 3.1482 -3.4983 39 1 1.2350 1.8149 -1.4397 40 1 1.1493 0.5388 2.5435 41 1 1.6995 0.9664 4.6651 42 1 3.0858 0.1027 5.4050 43 1 -1.0558 -0.9609 5.8723 44 1 -0.4379 0.4176 4.9062 45 1 -0.9341 -2.3249 4.0041 46 1 -0.3190 -0.9469 3.0380 47 1 1.7283 -1.8073 9.1806 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110056629.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:39 Heat of formation + Delta-G solvation = -12.110479 kcal Electronic energy + Delta-G solvation = -28480.600594 eV Core-core repulsion = 24629.503673 eV Total energy + Delta-G solvation = -3851.096921 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.80769 -40.99001 -39.73154 -38.18245 -35.57732 -34.36350 -33.09342 -31.72067 -31.00094 -30.66532 -30.42591 -29.10748 -26.33683 -25.52724 -23.82686 -23.26618 -22.75823 -21.72240 -21.04911 -20.21006 -19.39517 -18.99738 -18.23897 -17.32910 -16.85113 -16.81269 -16.68898 -16.22478 -16.18339 -15.83668 -15.43422 -15.17122 -14.99647 -14.37132 -14.14364 -14.07601 -13.96012 -13.60366 -13.46142 -13.25470 -13.21396 -12.89586 -12.82694 -12.79806 -12.60745 -12.42208 -12.31728 -12.05987 -11.98847 -11.88939 -11.72088 -11.52271 -11.19819 -11.06224 -10.80776 -10.79063 -10.05691 -9.91947 -9.16359 -8.86787 -7.81137 -5.20230 0.41891 0.50216 1.43977 1.45536 1.49004 1.55165 1.61596 2.45572 2.60353 2.87419 3.31904 3.44675 3.59170 3.73045 3.83055 3.89232 3.96616 4.03742 4.11358 4.16049 4.31637 4.38400 4.42661 4.48095 4.54280 4.59927 4.66410 4.69603 4.72636 4.79923 4.81062 4.96299 5.05747 5.11491 5.14755 5.17000 5.19698 5.31939 5.38569 5.46720 5.50730 5.52884 5.63340 5.73832 5.87412 5.88504 6.27485 6.39118 6.58021 7.05156 7.22176 7.67845 8.53820 9.25594 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.030109 B = 0.002443 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.718550 B =11460.899657 C =11887.609401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.073 3.927 3 H 0.128 0.872 4 O -0.318 6.318 5 C 0.106 3.894 6 C -0.177 4.177 7 C -0.084 4.084 8 C -0.163 4.163 9 C -0.082 4.082 10 C -0.215 4.215 11 C 0.511 3.489 12 O -0.576 6.576 13 N -0.686 5.686 14 C 0.144 3.856 15 H 0.050 0.950 16 C -0.120 4.120 17 C 0.136 3.864 18 H 0.121 0.879 19 C -0.125 4.125 20 C -0.116 4.116 21 C 0.116 3.884 22 H 0.058 0.942 23 N -0.618 5.618 24 C -0.224 4.224 25 H 0.068 0.932 26 C -0.062 4.062 27 N -0.942 5.942 28 Si 0.975 3.025 29 H -0.276 1.276 30 H -0.291 1.291 31 H -0.290 1.290 32 H 0.057 0.943 33 H 0.108 0.892 34 H 0.092 0.908 35 H 0.120 0.880 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.153 0.847 39 H 0.151 0.849 40 H 0.418 0.582 41 H 0.103 0.897 42 H 0.049 0.951 43 H 0.033 0.967 44 H 0.093 0.907 45 H 0.038 0.962 46 H 0.091 0.909 47 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.358 14.958 -22.994 27.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.013 3.987 3 H 0.146 0.854 4 O -0.232 6.232 5 C 0.061 3.939 6 C -0.196 4.196 7 C -0.102 4.102 8 C -0.181 4.181 9 C -0.099 4.099 10 C -0.234 4.234 11 C 0.297 3.703 12 O -0.454 6.454 13 N -0.340 5.340 14 C 0.037 3.963 15 H 0.068 0.932 16 C -0.160 4.160 17 C 0.030 3.970 18 H 0.138 0.862 19 C -0.164 4.164 20 C -0.155 4.155 21 C 0.008 3.992 22 H 0.077 0.923 23 N -0.340 5.340 24 C -0.353 4.353 25 H 0.086 0.914 26 C -0.255 4.255 27 N -0.592 5.592 28 Si 0.804 3.196 29 H -0.201 1.201 30 H -0.218 1.218 31 H -0.217 1.217 32 H 0.077 0.923 33 H 0.127 0.873 34 H 0.111 0.889 35 H 0.138 0.862 36 H 0.166 0.834 37 H 0.166 0.834 38 H 0.171 0.829 39 H 0.168 0.832 40 H 0.257 0.743 41 H 0.121 0.879 42 H 0.068 0.932 43 H 0.052 0.948 44 H 0.111 0.889 45 H 0.057 0.943 46 H 0.109 0.891 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.751 13.892 -22.758 26.926 hybrid contribution 0.307 -1.113 1.096 1.592 sum -3.443 12.779 -21.662 25.386 Atomic orbital electron populations 1.22381 0.90304 1.04188 1.05986 1.22328 0.97217 0.97232 0.81892 0.85444 1.86187 1.81688 1.38387 1.16913 1.19393 0.96624 0.91528 0.86368 1.20693 1.04682 1.01741 0.92454 1.21268 0.97536 0.94447 0.96935 1.21465 1.01179 0.95581 0.99851 1.21361 0.96311 1.00567 0.91706 1.21574 1.06850 0.93261 1.01670 1.20762 0.79870 0.84421 0.85262 1.90734 1.39412 1.28121 1.87158 1.45702 1.52870 1.31757 1.03706 1.22744 0.96421 0.93371 0.83760 0.93207 1.23714 1.00464 0.97850 0.93954 1.23676 0.91609 0.82131 0.99550 0.86225 1.22963 0.97973 0.99279 0.96197 1.22832 0.95564 0.98669 0.98476 1.23277 0.95541 0.95230 0.85134 0.92330 1.46698 1.79163 1.07182 1.00912 1.19303 1.37986 0.89235 0.88789 0.91432 1.25388 1.03321 0.99510 0.97306 1.69663 1.56927 1.22350 1.10217 0.85055 0.77050 0.78864 0.78629 1.20141 1.21815 1.21685 0.92348 0.87310 0.88924 0.86219 0.83418 0.83383 0.82898 0.83190 0.74321 0.87896 0.93241 0.94766 0.88908 0.94279 0.89091 0.94081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.46 9.08 71.98 0.65 -1.80 16 2 C 0.07 1.50 2.64 29.85 0.08 1.58 16 3 H 0.13 1.80 6.29 -2.39 -0.02 1.78 16 4 O -0.32 -8.69 9.33 -73.45 -0.69 -9.37 16 5 C 0.11 2.36 6.60 22.51 0.15 2.51 16 6 C -0.18 -3.78 9.99 22.37 0.22 -3.56 16 7 C -0.08 -1.30 10.04 22.25 0.22 -1.07 16 8 C -0.16 -2.04 10.04 22.28 0.22 -1.82 16 9 C -0.08 -1.01 10.04 22.25 0.22 -0.78 16 10 C -0.22 -3.37 8.26 22.37 0.18 -3.18 16 11 C 0.51 15.04 7.22 87.66 0.63 15.67 16 12 O -0.58 -24.03 16.24 16.01 0.26 -23.77 16 13 N -0.69 -17.52 3.56 -428.70 -1.52 -19.05 16 14 C 0.14 5.19 3.18 47.95 0.15 5.34 16 15 H 0.05 2.14 7.73 -2.39 -0.02 2.13 16 16 C -0.12 -4.20 6.41 33.55 0.22 -3.99 16 17 C 0.14 5.95 4.67 46.23 0.22 6.16 16 18 H 0.12 6.16 5.52 -2.39 -0.01 6.15 16 19 C -0.12 -4.37 6.44 32.21 0.21 -4.16 16 20 C -0.12 -3.95 6.32 32.21 0.20 -3.75 16 21 C 0.12 4.91 5.29 46.23 0.24 5.16 16 22 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16 23 N -0.62 -31.38 3.00 -615.26 -1.85 -33.23 16 24 C -0.22 -12.84 10.59 84.03 0.89 -11.95 16 25 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 26 C -0.06 -3.54 5.50 84.86 0.47 -3.07 16 27 N -0.94 -54.50 10.47 21.65 0.23 -54.27 16 28 Si 0.97 46.60 29.55 68.60 2.03 48.62 16 29 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 30 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 31 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 32 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 33 H 0.11 0.93 7.56 -2.39 -0.02 0.91 16 34 H 0.09 1.02 6.95 -2.39 -0.02 1.00 16 35 H 0.12 2.67 8.06 -2.91 -0.02 2.64 16 36 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 37 H 0.15 1.04 8.06 -2.91 -0.02 1.02 16 38 H 0.15 0.96 8.06 -2.91 -0.02 0.94 16 39 H 0.15 1.58 5.44 -2.92 -0.02 1.56 16 40 H 0.42 6.87 7.54 -92.71 -0.70 6.17 16 41 H 0.10 2.58 7.42 -2.39 -0.02 2.56 16 42 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.09 2.37 7.79 -2.38 -0.02 2.35 16 45 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.09 2.33 6.48 -2.39 -0.02 2.31 16 47 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 Total: -1.00 -77.49 373.59 3.93 -73.55 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: 0.29 Total: 20.23 kcal Atomic # 6 Polarization: -7.90 SS G_CDS: 5.19 Total: -2.71 kcal Atomic # 7 Polarization: -103.41 SS G_CDS: -3.14 Total: -106.55 kcal Atomic # 8 Polarization: -32.72 SS G_CDS: -0.43 Total: -33.15 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.62 kcal Total: -77.49 3.93 -73.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110056629.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.441 kcal (2) G-P(sol) polarization free energy of solvation -77.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds