Wall clock time and date at job start Tue Mar 31 2020 16:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47198 * 2 1 4 4 O 1.42905 * 109.46618 * 240.00422 * 2 1 3 5 5 C 1.42904 * 114.00141 * 90.00384 * 4 2 1 6 6 C 1.50692 * 109.47101 * 179.97438 * 5 4 2 7 7 C 1.38235 * 120.00245 * 269.72681 * 6 5 4 8 8 C 1.38235 * 120.00107 * 179.78606 * 7 6 5 9 9 C 1.38233 * 120.00290 * 0.46672 * 8 7 6 10 10 C 1.38235 * 119.99735 * 359.76125 * 9 8 7 11 11 C 1.38236 * 120.00263 * 89.99925 * 6 5 4 12 12 C 1.50697 * 109.47178 * 120.00566 * 2 1 3 13 13 O 1.21285 * 120.00204 * 119.99825 * 12 2 1 14 14 N 1.34769 * 119.99728 * 299.99695 * 12 2 1 15 15 C 1.46505 * 119.99744 * 179.97438 * 14 12 2 16 16 H 1.08992 * 115.49674 * 350.37962 * 15 14 12 17 17 C 1.53005 * 117.43914 * 204.99817 * 15 14 12 18 18 H 1.08988 * 119.54358 * 5.71688 * 17 15 14 19 19 C 1.54389 * 118.12025 * 160.81189 * 17 15 14 20 20 N 1.48145 * 104.62096 * 89.20542 * 19 17 15 21 21 C 1.36937 * 127.83797 * 140.41350 * 20 19 17 22 22 H 1.07998 * 120.00135 * 338.92153 * 21 20 19 23 23 C 1.38814 * 119.99845 * 158.92211 * 21 20 19 24 24 N 1.31620 * 120.00219 * 335.62295 * 23 21 20 25 25 Si 1.86807 * 119.99907 * 155.61961 * 23 21 20 26 26 H 1.48505 * 109.46510 * 60.00394 * 25 23 21 27 27 H 1.48496 * 109.47218 * 300.00412 * 25 23 21 28 28 H 1.48498 * 109.46941 * 179.97438 * 25 23 21 29 29 C 1.48153 * 104.32530 * 320.67685 * 20 19 17 30 30 C 1.53993 * 104.81380 * 39.27387 * 29 20 19 31 31 H 1.08993 * 118.03125 * 115.98706 * 30 29 20 32 32 H 1.08993 * 109.47454 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46893 * 300.00154 * 1 2 3 34 34 H 1.09004 * 109.46904 * 59.99518 * 1 2 3 35 35 H 1.09001 * 109.47011 * 299.99445 * 5 4 2 36 36 H 1.08997 * 109.47074 * 59.99400 * 5 4 2 37 37 H 1.08004 * 120.00166 * 359.97438 * 7 6 5 38 38 H 1.08003 * 119.99942 * 180.25061 * 8 7 6 39 39 H 1.07998 * 120.00492 * 179.79093 * 9 8 7 40 40 H 1.08005 * 120.00485 * 180.02562 * 10 9 8 41 41 H 1.08003 * 119.99738 * 359.97438 * 11 6 5 42 42 H 0.96998 * 120.00740 * 359.97438 * 14 12 2 43 43 H 1.09007 * 110.40708 * 330.42502 * 19 17 15 44 44 H 1.08993 * 110.50841 * 208.04433 * 19 17 15 45 45 H 0.96998 * 119.99845 * 354.46721 * 24 23 21 46 46 H 1.09000 * 110.40870 * 158.10391 * 29 20 19 47 47 H 1.09000 * 110.40347 * 280.54104 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.2001 0.1831 -2.2942 6 6 2.7013 -0.6280 -3.4611 7 6 4.0598 -0.7955 -3.6538 8 6 4.5195 -1.5432 -4.7218 9 6 3.6209 -2.1154 -5.6026 10 6 2.2624 -1.9440 -5.4127 11 6 1.8026 -1.1999 -4.3422 12 6 2.0324 -0.7105 1.2304 13 8 2.7296 -1.6966 1.1190 14 7 1.7068 -0.2501 2.4544 15 6 2.1947 -0.9412 3.6506 16 1 2.6737 -1.9041 3.4735 17 6 1.3809 -0.7843 4.9367 18 1 0.4295 -0.2535 4.9092 19 6 1.5894 -1.8218 6.0609 20 7 2.6928 -1.2686 6.8803 21 6 2.8144 -1.2820 8.2442 22 1 1.9390 -1.4114 8.8632 23 6 4.0630 -1.1291 8.8311 24 7 5.1495 -1.4452 8.1588 25 14 4.2014 -0.4747 10.5753 26 1 3.4775 -1.3808 11.5028 27 1 3.6043 0.8833 10.6433 28 1 5.6323 -0.4070 10.9666 29 6 3.6315 -0.6920 5.8898 30 6 2.7294 -0.0431 4.8237 31 1 2.7820 1.0383 4.6976 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3633 0.5139 -0.8900 35 1 1.2538 0.6548 -2.5589 36 1 2.9319 0.9514 -2.0450 37 1 4.7621 -0.3448 -2.9682 38 1 5.5808 -1.6775 -4.8699 39 1 3.9800 -2.6968 -6.4389 40 1 1.5602 -2.3913 -6.1006 41 1 0.7413 -1.0657 -4.1940 42 1 1.1495 0.5388 2.5436 43 1 1.8751 -2.7859 5.6401 44 1 0.6846 -1.9226 6.6601 45 1 5.0756 -1.8596 7.2849 46 1 4.2648 0.0606 6.3596 47 1 4.2408 -1.4770 5.4419 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114548371.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:28 Heat of formation + Delta-G solvation = 5.600803 kcal Electronic energy + Delta-G solvation = -26896.421779 eV Core-core repulsion = 23046.092877 eV Total energy + Delta-G solvation = -3850.328902 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.22292 -39.56812 -38.63170 -37.48327 -34.66899 -33.24204 -32.51141 -31.20707 -31.07538 -29.85732 -27.43079 -26.55629 -25.58179 -24.37031 -22.89043 -21.89063 -21.66639 -20.59427 -20.16188 -19.39853 -17.69017 -17.48915 -17.34480 -16.85871 -16.25199 -15.88147 -15.59379 -15.18207 -14.69579 -14.23784 -14.05298 -13.83526 -13.70295 -13.59144 -13.56957 -13.25957 -13.16701 -12.83806 -12.73240 -12.45528 -12.33810 -11.91904 -11.73246 -11.55301 -11.35056 -11.24053 -10.81414 -10.70975 -10.57144 -10.27767 -10.23268 -10.04277 -9.65890 -9.64282 -9.28577 -9.21470 -9.14384 -8.57405 -8.37964 -7.00791 -6.14262 -3.20476 0.93317 1.10788 2.50719 2.66573 3.36928 3.48672 3.51851 3.70388 3.82790 4.08783 4.35647 4.45451 4.51316 4.56079 4.58885 4.68803 4.72896 4.82166 4.89878 4.93663 4.95802 5.18861 5.20232 5.21492 5.28688 5.31700 5.34575 5.41272 5.64348 5.70216 5.72227 5.73859 5.76121 5.93688 6.08135 6.12950 6.19996 6.27166 6.36929 6.57154 6.59766 6.67008 6.73750 6.78308 6.96302 6.98892 7.46620 7.72544 8.19557 8.43115 8.95873 9.76729 10.39444 11.21655 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.026574 B = 0.001866 C = 0.001793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.405552 B =15002.403743 C =15614.281512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.072 3.928 3 H 0.088 0.912 4 O -0.348 6.348 5 C 0.100 3.900 6 C -0.090 4.090 7 C -0.095 4.095 8 C -0.123 4.123 9 C -0.114 4.114 10 C -0.125 4.125 11 C -0.098 4.098 12 C 0.515 3.485 13 O -0.514 6.514 14 N -0.696 5.696 15 C 0.097 3.903 16 H 0.135 0.865 17 C -0.174 4.174 18 H 0.104 0.896 19 C 0.154 3.846 20 N -0.596 5.596 21 C -0.332 4.332 22 H 0.065 0.935 23 C -0.026 4.026 24 N -0.916 5.916 25 Si 1.070 2.930 26 H -0.292 1.292 27 H -0.293 1.293 28 H -0.284 1.284 29 C 0.165 3.835 30 C -0.178 4.178 31 H 0.107 0.893 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.124 0.876 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.398 0.602 43 H 0.026 0.974 44 H 0.054 0.946 45 H 0.269 0.731 46 H 0.068 0.932 47 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.111 6.372 -26.893 29.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.010 3.990 3 H 0.106 0.894 4 O -0.267 6.267 5 C 0.024 3.976 6 C -0.090 4.090 7 C -0.113 4.113 8 C -0.141 4.141 9 C -0.133 4.133 10 C -0.143 4.143 11 C -0.116 4.116 12 C 0.300 3.700 13 O -0.388 6.388 14 N -0.346 5.346 15 C -0.009 4.009 16 H 0.152 0.848 17 C -0.195 4.195 18 H 0.122 0.878 19 C 0.027 3.973 20 N -0.321 5.321 21 C -0.460 4.460 22 H 0.083 0.917 23 C -0.228 4.228 24 N -0.556 5.556 25 Si 0.900 3.100 26 H -0.219 1.219 27 H -0.221 1.221 28 H -0.210 1.210 29 C 0.039 3.961 30 C -0.199 4.199 31 H 0.124 0.876 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.142 0.858 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.232 0.768 43 H 0.044 0.956 44 H 0.072 0.928 45 H 0.080 0.920 46 H 0.086 0.914 47 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -7.462 5.882 -25.634 27.338 hybrid contribution -1.603 0.291 -1.161 2.001 sum -9.065 6.173 -26.796 28.953 Atomic orbital electron populations 1.22253 0.93491 1.04051 1.03079 1.21892 0.95072 0.96340 0.85690 0.89417 1.88155 1.86499 1.33627 1.18373 1.21435 0.99695 0.91753 0.84748 1.19537 0.93732 1.00152 0.95572 1.21120 0.94944 0.97960 0.97260 1.21176 0.99915 0.97904 0.95121 1.21216 0.93459 0.99288 0.99290 1.21147 0.95793 0.99266 0.98133 1.21056 0.99426 0.96663 0.94459 1.20297 0.80662 0.85103 0.83957 1.90749 1.36333 1.25415 1.86258 1.45266 1.53123 1.31560 1.04664 1.22498 1.01597 0.97616 0.79163 0.84787 1.24323 0.95657 1.03411 0.96087 0.87823 1.21133 0.93174 0.92776 0.90168 1.45257 1.21313 1.63802 1.01713 1.19729 0.95069 1.51941 0.79249 0.91719 1.25898 0.91427 0.99886 1.05557 1.70760 1.29650 1.39543 1.15686 0.83449 0.75814 0.76216 0.74565 1.21906 1.22055 1.20981 1.21031 0.91640 0.95761 0.87651 1.25075 0.98662 0.97825 0.98361 0.87552 0.90870 0.90843 0.91217 0.92180 0.92155 0.85788 0.85805 0.85999 0.85912 0.85957 0.76761 0.95585 0.92753 0.91953 0.91369 0.95349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.27 9.42 37.16 0.35 -0.92 16 2 C 0.07 0.72 3.14 -27.88 -0.09 0.63 16 3 H 0.09 0.64 7.79 -51.93 -0.40 0.24 16 4 O -0.35 -4.26 9.50 -55.14 -0.52 -4.78 16 5 C 0.10 0.88 5.87 36.00 0.21 1.09 16 6 C -0.09 -0.87 5.51 -104.63 -0.58 -1.45 16 7 C -0.09 -0.91 9.70 -39.58 -0.38 -1.30 16 8 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 9 C -0.11 -0.90 10.05 -39.58 -0.40 -1.30 16 10 C -0.13 -0.99 10.05 -39.58 -0.40 -1.39 16 11 C -0.10 -0.85 9.70 -39.58 -0.38 -1.24 16 12 C 0.52 7.32 7.23 -10.99 -0.08 7.24 16 13 O -0.51 -9.94 16.07 -14.36 -0.23 -10.17 16 14 N -0.70 -8.90 5.46 -51.64 -0.28 -9.18 16 15 C 0.10 1.60 6.20 -65.69 -0.41 1.20 16 16 H 0.13 2.55 7.40 -51.93 -0.38 2.17 16 17 C -0.17 -2.99 6.91 -89.21 -0.62 -3.61 16 18 H 0.10 1.54 8.14 -51.94 -0.42 1.12 16 19 C 0.15 3.27 7.04 -2.41 -0.02 3.25 16 20 N -0.60 -15.34 3.23 -169.10 -0.55 -15.89 16 21 C -0.33 -9.45 10.19 -15.06 -0.15 -9.60 16 22 H 0.07 1.82 7.94 -52.49 -0.42 1.40 16 23 C -0.03 -0.74 5.12 -17.43 -0.09 -0.83 16 24 N -0.92 -28.01 12.82 55.49 0.71 -27.30 16 25 Si 1.07 25.36 29.98 -169.99 -5.10 20.26 16 26 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 27 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 28 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 29 C 0.17 3.90 5.01 -2.62 -0.01 3.89 16 30 C -0.18 -3.27 7.22 -87.19 -0.63 -3.90 16 31 H 0.11 1.77 8.14 -51.93 -0.42 1.35 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.42 7.57 -51.93 -0.39 0.03 16 34 H 0.07 0.39 7.87 -51.93 -0.41 -0.02 16 35 H 0.06 0.39 7.82 -51.93 -0.41 -0.02 16 36 H 0.06 0.45 8.03 -51.93 -0.42 0.04 16 37 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 38 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 39 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 40 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 41 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 42 H 0.40 3.72 8.25 -40.82 -0.34 3.38 16 43 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.27 8.30 6.41 -40.82 -0.26 8.04 16 46 H 0.07 1.76 7.47 -51.93 -0.39 1.37 16 47 H 0.03 0.71 7.66 -51.93 -0.40 0.31 16 LS Contribution 391.97 15.07 5.91 5.91 Total: -1.00 -35.86 391.97 -11.37 -47.23 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -7.24 Total: 3.61 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -4.07 Total: -9.69 kcal Atomic # 7 Polarization: -52.25 SS G_CDS: -0.12 Total: -52.37 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -0.75 Total: -14.95 kcal Atomic # 14 Polarization: 25.36 SS G_CDS: -5.10 Total: 20.26 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.86 -11.37 -47.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114548371.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.832 kcal (2) G-P(sol) polarization free energy of solvation -35.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds