Wall clock time and date at job start Tue Mar 31 2020 16:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47198 * 2 1 4 4 O 1.42905 * 109.46618 * 240.00422 * 2 1 3 5 5 C 1.42904 * 114.00141 * 90.00384 * 4 2 1 6 6 C 1.50692 * 109.47101 * 179.97438 * 5 4 2 7 7 C 1.38235 * 120.00245 * 269.72681 * 6 5 4 8 8 C 1.38235 * 120.00107 * 179.78606 * 7 6 5 9 9 C 1.38233 * 120.00290 * 0.46672 * 8 7 6 10 10 C 1.38235 * 119.99735 * 359.76125 * 9 8 7 11 11 C 1.38236 * 120.00263 * 89.99925 * 6 5 4 12 12 C 1.50697 * 109.47178 * 120.00566 * 2 1 3 13 13 O 1.21285 * 120.00204 * 119.99825 * 12 2 1 14 14 N 1.34769 * 119.99728 * 299.99695 * 12 2 1 15 15 C 1.46505 * 119.99744 * 179.97438 * 14 12 2 16 16 H 1.08992 * 115.49674 * 350.37962 * 15 14 12 17 17 C 1.53005 * 117.43914 * 204.99817 * 15 14 12 18 18 H 1.08988 * 119.54358 * 5.71688 * 17 15 14 19 19 C 1.54389 * 118.12025 * 160.81189 * 17 15 14 20 20 N 1.48145 * 104.62096 * 89.20542 * 19 17 15 21 21 C 1.36937 * 127.83797 * 140.41350 * 20 19 17 22 22 H 1.07998 * 120.00135 * 338.92153 * 21 20 19 23 23 C 1.38814 * 119.99845 * 158.92211 * 21 20 19 24 24 N 1.31620 * 120.00219 * 335.62295 * 23 21 20 25 25 Si 1.86807 * 119.99907 * 155.61961 * 23 21 20 26 26 H 1.48505 * 109.46510 * 60.00394 * 25 23 21 27 27 H 1.48496 * 109.47218 * 300.00412 * 25 23 21 28 28 H 1.48498 * 109.46941 * 179.97438 * 25 23 21 29 29 C 1.48153 * 104.32530 * 320.67685 * 20 19 17 30 30 C 1.53993 * 104.81380 * 39.27387 * 29 20 19 31 31 H 1.08993 * 118.03125 * 115.98706 * 30 29 20 32 32 H 1.08993 * 109.47454 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46893 * 300.00154 * 1 2 3 34 34 H 1.09004 * 109.46904 * 59.99518 * 1 2 3 35 35 H 1.09001 * 109.47011 * 299.99445 * 5 4 2 36 36 H 1.08997 * 109.47074 * 59.99400 * 5 4 2 37 37 H 1.08004 * 120.00166 * 359.97438 * 7 6 5 38 38 H 1.08003 * 119.99942 * 180.25061 * 8 7 6 39 39 H 1.07998 * 120.00492 * 179.79093 * 9 8 7 40 40 H 1.08005 * 120.00485 * 180.02562 * 10 9 8 41 41 H 1.08003 * 119.99738 * 359.97438 * 11 6 5 42 42 H 0.96998 * 120.00740 * 359.97438 * 14 12 2 43 43 H 1.09007 * 110.40708 * 330.42502 * 19 17 15 44 44 H 1.08993 * 110.50841 * 208.04433 * 19 17 15 45 45 H 0.96998 * 119.99845 * 354.46721 * 24 23 21 46 46 H 1.09000 * 110.40870 * 158.10391 * 29 20 19 47 47 H 1.09000 * 110.40347 * 280.54104 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.2001 0.1831 -2.2942 6 6 2.7013 -0.6280 -3.4611 7 6 4.0598 -0.7955 -3.6538 8 6 4.5195 -1.5432 -4.7218 9 6 3.6209 -2.1154 -5.6026 10 6 2.2624 -1.9440 -5.4127 11 6 1.8026 -1.1999 -4.3422 12 6 2.0324 -0.7105 1.2304 13 8 2.7296 -1.6966 1.1190 14 7 1.7068 -0.2501 2.4544 15 6 2.1947 -0.9412 3.6506 16 1 2.6737 -1.9041 3.4735 17 6 1.3809 -0.7843 4.9367 18 1 0.4295 -0.2535 4.9092 19 6 1.5894 -1.8218 6.0609 20 7 2.6928 -1.2686 6.8803 21 6 2.8144 -1.2820 8.2442 22 1 1.9390 -1.4114 8.8632 23 6 4.0630 -1.1291 8.8311 24 7 5.1495 -1.4452 8.1588 25 14 4.2014 -0.4747 10.5753 26 1 3.4775 -1.3808 11.5028 27 1 3.6043 0.8833 10.6433 28 1 5.6323 -0.4070 10.9666 29 6 3.6315 -0.6920 5.8898 30 6 2.7294 -0.0431 4.8237 31 1 2.7820 1.0383 4.6976 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3633 0.5139 -0.8900 35 1 1.2538 0.6548 -2.5589 36 1 2.9319 0.9514 -2.0450 37 1 4.7621 -0.3448 -2.9682 38 1 5.5808 -1.6775 -4.8699 39 1 3.9800 -2.6968 -6.4389 40 1 1.5602 -2.3913 -6.1006 41 1 0.7413 -1.0657 -4.1940 42 1 1.1495 0.5388 2.5436 43 1 1.8751 -2.7859 5.6401 44 1 0.6846 -1.9226 6.6601 45 1 5.0756 -1.8596 7.2849 46 1 4.2648 0.0606 6.3596 47 1 4.2408 -1.4770 5.4419 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114548371.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:27 Heat of formation + Delta-G solvation = -16.609735 kcal Electronic energy + Delta-G solvation = -26897.384901 eV Core-core repulsion = 23046.092877 eV Total energy + Delta-G solvation = -3851.292024 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.34287 -40.39115 -39.94265 -38.42739 -36.29532 -34.68754 -33.43694 -32.24500 -31.81252 -31.24165 -29.21348 -27.45359 -27.15641 -25.42370 -23.51930 -23.45299 -22.28748 -22.06102 -21.47585 -20.97468 -19.53731 -18.58752 -18.31227 -17.60612 -17.31125 -16.72552 -16.43063 -16.08858 -16.00969 -15.77102 -15.45346 -15.34620 -15.07915 -15.00068 -14.33598 -14.29143 -13.94442 -13.82289 -13.68276 -13.48029 -13.35836 -13.31529 -13.00929 -12.61618 -12.55521 -12.45106 -12.32566 -11.94549 -11.92130 -11.85411 -11.84255 -11.64698 -11.12946 -10.93371 -10.64876 -10.54126 -9.84431 -9.78581 -9.77041 -9.12343 -8.40230 -5.43187 0.29654 0.47794 1.39853 1.56944 1.62513 1.67723 1.84864 2.59762 2.64555 2.66521 3.11290 3.18645 3.39510 3.52968 3.63716 3.77209 3.83020 3.86855 3.96103 3.99248 4.07605 4.13115 4.25668 4.26532 4.29448 4.33904 4.37572 4.61729 4.67671 4.69761 4.70898 4.74498 4.81902 4.84023 4.96954 5.05618 5.12943 5.14727 5.19989 5.21475 5.39671 5.52312 5.58796 5.60384 5.63726 6.01950 6.08797 6.22762 6.47040 6.77114 7.14284 7.61493 8.28548 8.95399 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.026574 B = 0.001866 C = 0.001793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.405552 B =15002.403743 C =15614.281512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.077 3.923 3 H 0.123 0.877 4 O -0.384 6.384 5 C 0.098 3.902 6 C -0.110 4.110 7 C -0.118 4.118 8 C -0.136 4.136 9 C -0.122 4.122 10 C -0.132 4.132 11 C -0.109 4.109 12 C 0.510 3.490 13 O -0.575 6.575 14 N -0.675 5.675 15 C 0.116 3.884 16 H 0.103 0.897 17 C -0.149 4.149 18 H 0.145 0.855 19 C 0.145 3.855 20 N -0.621 5.621 21 C -0.340 4.340 22 H 0.066 0.934 23 C -0.082 4.082 24 N -0.948 5.948 25 Si 1.125 2.875 26 H -0.272 1.272 27 H -0.275 1.275 28 H -0.293 1.293 29 C 0.169 3.831 30 C -0.180 4.180 31 H 0.134 0.866 32 H 0.053 0.947 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.122 0.878 38 H 0.137 0.863 39 H 0.143 0.857 40 H 0.145 0.855 41 H 0.138 0.862 42 H 0.422 0.578 43 H 0.014 0.986 44 H 0.064 0.936 45 H 0.252 0.748 46 H 0.037 0.963 47 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.906 8.518 -28.104 31.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.016 3.984 3 H 0.140 0.860 4 O -0.303 6.303 5 C 0.023 3.977 6 C -0.110 4.110 7 C -0.136 4.136 8 C -0.154 4.154 9 C -0.140 4.140 10 C -0.150 4.150 11 C -0.127 4.127 12 C 0.298 3.702 13 O -0.453 6.453 14 N -0.327 5.327 15 C 0.009 3.991 16 H 0.121 0.879 17 C -0.169 4.169 18 H 0.163 0.837 19 C 0.019 3.981 20 N -0.347 5.347 21 C -0.468 4.468 22 H 0.084 0.916 23 C -0.278 4.278 24 N -0.590 5.590 25 Si 0.948 3.052 26 H -0.198 1.198 27 H -0.201 1.201 28 H -0.219 1.219 29 C 0.043 3.957 30 C -0.201 4.201 31 H 0.152 0.848 32 H 0.072 0.928 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.106 0.894 36 H 0.087 0.913 37 H 0.140 0.860 38 H 0.155 0.845 39 H 0.161 0.839 40 H 0.163 0.837 41 H 0.156 0.844 42 H 0.260 0.740 43 H 0.032 0.968 44 H 0.083 0.917 45 H 0.061 0.939 46 H 0.056 0.944 47 H 0.018 0.982 Dipole moment (debyes) X Y Z Total from point charges -10.330 8.066 -26.880 29.905 hybrid contribution -0.730 -0.486 -0.881 1.244 sum -11.060 7.580 -27.761 30.829 Atomic orbital electron populations 1.22268 0.90979 1.03553 1.05480 1.22021 0.96682 0.96733 0.82968 0.85952 1.88113 1.86985 1.35618 1.19603 1.21610 1.01332 0.91343 0.83464 1.19815 0.93933 1.00886 0.96371 1.21316 0.95414 0.98905 0.97968 1.21446 1.00966 0.97856 0.95113 1.21550 0.93591 0.99145 0.99700 1.21503 0.96331 0.98872 0.98279 1.21345 1.00216 0.96601 0.94506 1.21270 0.79320 0.84357 0.85271 1.90732 1.39130 1.28301 1.87113 1.45021 1.52776 1.31821 1.03089 1.21996 1.00595 0.96264 0.80282 0.87884 1.24191 0.96680 1.01412 0.94665 0.83705 1.21289 0.92111 0.93445 0.91222 1.45557 1.22612 1.64848 1.01661 1.20062 0.95119 1.50757 0.80897 0.91578 1.27445 0.91216 0.99973 1.09125 1.70893 1.30652 1.41964 1.15467 0.82745 0.75542 0.76706 0.70246 1.19762 1.20116 1.21878 1.20821 0.91895 0.94347 0.88663 1.24825 0.97905 0.99017 0.98392 0.84794 0.92802 0.88545 0.88726 0.89442 0.91270 0.85994 0.84533 0.83882 0.83711 0.84367 0.73991 0.96802 0.91732 0.93858 0.94431 0.98165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.82 9.42 71.98 0.68 -1.14 16 2 C 0.08 1.33 3.14 29.85 0.09 1.43 16 3 H 0.12 1.28 7.79 -2.39 -0.02 1.26 16 4 O -0.38 -8.87 9.50 -129.94 -1.23 -10.11 16 5 C 0.10 1.54 5.87 71.23 0.42 1.96 16 6 C -0.11 -2.05 5.51 -19.87 -0.11 -2.16 16 7 C -0.12 -2.29 9.70 22.27 0.22 -2.08 16 8 C -0.14 -2.30 10.05 22.27 0.22 -2.08 16 9 C -0.12 -1.80 10.05 22.27 0.22 -1.58 16 10 C -0.13 -1.91 10.05 22.27 0.22 -1.68 16 11 C -0.11 -1.75 9.70 22.27 0.22 -1.54 16 12 C 0.51 13.81 7.23 87.66 0.63 14.45 16 13 O -0.57 -22.73 16.07 15.99 0.26 -22.47 16 14 N -0.67 -15.52 5.46 -435.69 -2.38 -17.90 16 15 C 0.12 3.72 6.20 46.44 0.29 4.00 16 16 H 0.10 4.06 7.40 -2.39 -0.02 4.05 16 17 C -0.15 -4.79 6.91 -9.88 -0.07 -4.86 16 18 H 0.15 3.58 8.14 -2.39 -0.02 3.56 16 19 C 0.14 6.12 7.04 86.53 0.61 6.72 16 20 N -0.62 -32.66 3.23 -688.91 -2.22 -34.88 16 21 C -0.34 -19.63 10.19 84.03 0.86 -18.77 16 22 H 0.07 3.71 7.94 -2.91 -0.02 3.69 16 23 C -0.08 -4.83 5.12 84.86 0.43 -4.39 16 24 N -0.95 -60.26 12.82 21.65 0.28 -59.98 16 25 Si 1.12 51.45 29.98 68.60 2.06 53.51 16 26 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 27 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 28 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 29 C 0.17 8.29 5.01 86.40 0.43 8.72 16 30 C -0.18 -6.44 7.22 -8.57 -0.06 -6.51 16 31 H 0.13 4.09 8.14 -2.39 -0.02 4.08 16 32 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.10 0.61 7.57 -2.39 -0.02 0.59 16 34 H 0.09 0.61 7.87 -2.38 -0.02 0.59 16 35 H 0.09 0.84 7.82 -2.39 -0.02 0.82 16 36 H 0.07 0.91 8.03 -2.39 -0.02 0.90 16 37 H 0.12 2.25 8.06 -2.91 -0.02 2.22 16 38 H 0.14 1.79 8.06 -2.91 -0.02 1.76 16 39 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 40 H 0.15 1.34 8.06 -2.91 -0.02 1.31 16 41 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 42 H 0.42 5.94 8.25 -92.71 -0.76 5.17 16 43 H 0.01 0.63 8.14 -2.38 -0.02 0.61 16 44 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 45 H 0.25 16.46 6.41 -92.71 -0.59 15.86 16 46 H 0.04 2.03 7.47 -2.39 -0.02 2.01 16 47 H 0.00 0.03 7.66 -2.39 -0.02 0.01 16 Total: -1.00 -83.64 391.97 2.44 -81.20 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: 0.38 Total: 20.15 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: 5.31 Total: -9.50 kcal Atomic # 7 Polarization: -108.44 SS G_CDS: -4.33 Total: -112.77 kcal Atomic # 8 Polarization: -31.61 SS G_CDS: -0.98 Total: -32.58 kcal Atomic # 14 Polarization: 51.45 SS G_CDS: 2.06 Total: 53.51 kcal Total: -83.64 2.44 -81.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114548371.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.587 kcal (2) G-P(sol) polarization free energy of solvation -83.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds