Wall clock time and date at job start Tue Mar 31 2020 16:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47221 * 2 1 4 4 O 1.42904 * 109.47466 * 120.00078 * 2 1 3 5 5 C 1.42898 * 113.99930 * 269.99940 * 4 2 1 6 6 C 1.50693 * 109.47311 * 179.97438 * 5 4 2 7 7 C 1.38235 * 120.00100 * 269.72773 * 6 5 4 8 8 C 1.38238 * 119.99960 * 179.78779 * 7 6 5 9 9 C 1.38242 * 119.99872 * 0.45925 * 8 7 6 10 10 C 1.38235 * 120.00247 * 359.77150 * 9 8 7 11 11 C 1.38238 * 119.99809 * 89.99663 * 6 5 4 12 12 C 1.50704 * 109.46771 * 239.99779 * 2 1 3 13 13 O 1.21283 * 119.99955 * 245.00025 * 12 2 1 14 14 N 1.34780 * 119.99817 * 65.00565 * 12 2 1 15 15 C 1.46503 * 119.99564 * 180.27441 * 14 12 2 16 16 H 1.08998 * 115.51521 * 9.30363 * 15 14 12 17 17 C 1.52998 * 117.43893 * 223.95652 * 15 14 12 18 18 H 1.09003 * 119.53898 * 4.12723 * 17 15 14 19 19 C 1.54390 * 118.11976 * 160.81160 * 17 15 14 20 20 N 1.48142 * 104.61891 * 87.19425 * 19 17 15 21 21 C 1.36935 * 127.84102 * 140.41274 * 20 19 17 22 22 H 1.08000 * 119.99740 * 344.91726 * 21 20 19 23 23 C 1.38814 * 120.00059 * 164.91213 * 21 20 19 24 24 N 1.31619 * 119.99981 * 350.66409 * 23 21 20 25 25 Si 1.86800 * 119.99833 * 170.66800 * 23 21 20 26 26 H 1.48496 * 109.47256 * 90.00028 * 25 23 21 27 27 H 1.48499 * 109.46702 * 210.00041 * 25 23 21 28 28 H 1.48505 * 109.46921 * 329.99583 * 25 23 21 29 29 C 1.51830 * 104.54762 * 320.13747 * 20 19 17 30 30 C 1.52999 * 117.43707 * 154.72139 * 15 14 12 31 31 H 1.09001 * 119.54463 * 355.87699 * 30 15 14 32 32 H 1.09009 * 109.46603 * 300.00278 * 1 2 3 33 33 H 1.09004 * 109.47320 * 59.99674 * 1 2 3 34 34 H 1.09000 * 109.47167 * 180.02562 * 1 2 3 35 35 H 1.08997 * 109.47087 * 299.99802 * 5 4 2 36 36 H 1.09005 * 109.47118 * 59.99572 * 5 4 2 37 37 H 1.07998 * 120.00128 * 359.97438 * 7 6 5 38 38 H 1.08001 * 120.00483 * 180.25359 * 8 7 6 39 39 H 1.07997 * 119.99716 * 179.79021 * 9 8 7 40 40 H 1.07993 * 120.00277 * 180.02562 * 10 9 8 41 41 H 1.07995 * 119.99976 * 359.97438 * 11 6 5 42 42 H 0.96999 * 119.99962 * 359.97438 * 14 12 2 43 43 H 1.09004 * 110.40775 * 205.98130 * 19 17 15 44 44 H 1.08998 * 110.40797 * 328.28635 * 19 17 15 45 45 H 0.96999 * 119.99784 * 180.02562 * 24 23 21 46 46 H 1.08997 * 111.95980 * 281.19473 * 29 20 19 47 47 H 1.09003 * 110.52727 * 157.59476 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.2002 0.1829 2.2940 6 6 2.7004 -0.6284 3.4613 7 6 1.8012 -1.1949 4.3452 8 6 2.2600 -1.9427 5.4135 9 6 3.6183 -2.1161 5.6032 10 6 4.5177 -1.5456 4.7220 11 6 4.0587 -0.8013 3.6512 12 6 2.0322 -0.7105 -1.2305 13 8 2.6529 -1.7468 -1.1215 14 7 1.7918 -0.1942 -2.4521 15 6 2.2749 -0.8880 -3.6485 16 1 2.6782 -1.8868 -3.4814 17 6 2.9276 -0.0386 -4.7409 18 1 3.0758 1.0285 -4.5752 19 6 3.8302 -0.7486 -5.7729 20 7 2.9013 -1.1966 -6.8364 21 6 3.1055 -1.1836 -8.1904 22 1 3.9134 -0.6019 -8.6090 23 6 2.2741 -1.9181 -9.0248 24 7 1.4104 -2.7679 -8.5109 25 14 2.3815 -1.7006 -10.8769 26 1 3.3712 -2.6587 -11.4314 27 1 1.0505 -1.9574 -11.4833 28 1 2.8078 -0.3126 -11.1884 29 6 1.6716 -1.6813 -6.0894 30 6 1.5239 -0.6408 -4.9584 31 1 0.6264 -0.0223 -4.9548 32 1 -0.3633 0.5139 0.8901 33 1 -0.3634 0.5139 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 2.9320 0.9513 2.0449 36 1 1.2539 0.6547 2.5588 37 1 0.7402 -1.0558 4.1996 38 1 1.5574 -2.3888 6.1018 39 1 3.9768 -2.6976 6.4397 40 1 5.5788 -1.6814 4.8700 41 1 4.7613 -0.3555 2.9629 42 1 1.2952 0.6345 -2.5392 43 1 4.5646 -0.0524 -6.1781 44 1 4.3294 -1.6034 -5.3168 45 1 0.8297 -3.2814 -9.0940 46 1 1.8146 -2.6782 -5.6724 47 1 0.7970 -1.6623 -6.7398 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114892036.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:32 Heat of formation + Delta-G solvation = 10.131902 kcal Electronic energy + Delta-G solvation = -26860.447164 eV Core-core repulsion = 23010.314744 eV Total energy + Delta-G solvation = -3850.132419 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.17114 -39.54149 -38.51087 -37.38691 -34.40168 -33.08879 -32.41934 -31.19325 -31.03551 -29.92708 -27.14044 -26.53056 -25.77423 -24.34892 -22.87673 -21.79089 -21.64474 -20.52992 -20.12917 -19.21816 -17.64428 -17.32269 -16.84182 -16.78518 -16.14707 -15.81547 -15.54773 -15.14333 -14.68979 -14.55466 -14.16827 -13.70319 -13.67753 -13.49706 -13.27072 -13.20349 -12.80779 -12.73835 -12.64639 -12.39342 -12.17513 -11.74043 -11.49152 -11.46891 -11.33099 -11.21782 -10.99680 -10.82378 -10.43664 -10.21118 -10.19279 -10.13929 -9.68818 -9.55336 -9.20858 -9.19922 -9.11916 -8.74356 -8.34784 -6.87188 -5.78378 -3.11271 0.94980 1.12149 2.59496 2.73065 3.38366 3.41377 3.44468 3.46261 3.86780 4.29578 4.40296 4.47283 4.48056 4.57748 4.64353 4.70598 4.77073 4.84265 4.92780 4.97516 5.14229 5.21952 5.27398 5.33685 5.34695 5.37847 5.39207 5.56301 5.65902 5.74059 5.79069 5.80938 5.89081 6.13498 6.14384 6.21215 6.21394 6.28706 6.52458 6.66826 6.69750 6.70591 6.86370 6.89600 7.30768 7.51395 7.55689 7.70122 8.15122 8.27577 9.06930 9.73678 10.50439 11.36728 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.031276 B = 0.001812 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.052046 B =15447.506958 C =15727.644698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.072 3.928 3 H 0.086 0.914 4 O -0.348 6.348 5 C 0.100 3.900 6 C -0.089 4.089 7 C -0.098 4.098 8 C -0.125 4.125 9 C -0.115 4.115 10 C -0.124 4.124 11 C -0.095 4.095 12 C 0.515 3.485 13 O -0.515 6.515 14 N -0.696 5.696 15 C 0.096 3.904 16 H 0.132 0.868 17 C -0.182 4.182 18 H 0.103 0.897 19 C 0.158 3.842 20 N -0.598 5.598 21 C -0.224 4.224 22 H 0.077 0.923 23 C -0.007 4.007 24 N -0.917 5.917 25 Si 0.912 3.088 26 H -0.288 1.288 27 H -0.290 1.290 28 H -0.281 1.281 29 C 0.185 3.815 30 C -0.177 4.177 31 H 0.102 0.898 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.123 0.877 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.124 0.876 41 H 0.124 0.876 42 H 0.398 0.602 43 H 0.051 0.949 44 H 0.026 0.974 45 H 0.254 0.746 46 H 0.032 0.968 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.403 9.123 27.408 28.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.010 3.990 3 H 0.104 0.896 4 O -0.266 6.266 5 C 0.023 3.977 6 C -0.090 4.090 7 C -0.116 4.116 8 C -0.143 4.143 9 C -0.133 4.133 10 C -0.142 4.142 11 C -0.113 4.113 12 C 0.299 3.701 13 O -0.389 6.389 14 N -0.347 5.347 15 C -0.009 4.009 16 H 0.149 0.851 17 C -0.203 4.203 18 H 0.121 0.879 19 C 0.031 3.969 20 N -0.323 5.323 21 C -0.353 4.353 22 H 0.094 0.906 23 C -0.204 4.204 24 N -0.563 5.563 25 Si 0.742 3.258 26 H -0.215 1.215 27 H -0.216 1.216 28 H -0.206 1.206 29 C 0.060 3.940 30 C -0.198 4.198 31 H 0.120 0.880 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.141 0.859 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.142 0.858 41 H 0.142 0.858 42 H 0.232 0.768 43 H 0.070 0.930 44 H 0.044 0.956 45 H 0.064 0.936 46 H 0.050 0.950 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.983 8.060 27.254 28.438 hybrid contribution -0.347 0.858 -0.988 1.354 sum -1.330 8.918 26.266 27.770 Atomic orbital electron populations 1.22243 0.93409 1.04136 1.03064 1.21900 0.95170 0.96205 0.85710 0.89628 1.88161 1.86484 1.33610 1.18387 1.21431 0.99677 0.91743 0.84804 1.19543 0.93723 1.00134 0.95553 1.21062 0.99449 0.96621 0.94443 1.21150 0.95794 0.99205 0.98161 1.21215 0.93462 0.99300 0.99304 1.21170 0.99878 0.97982 0.95120 1.21110 0.94948 0.98013 0.97249 1.20282 0.80051 0.85747 0.83986 1.90742 1.39014 1.22931 1.86198 1.45311 1.57305 1.27153 1.04885 1.21877 1.02034 0.97343 0.79687 0.85072 1.24384 0.97626 0.98723 0.99606 0.87923 1.21056 0.91681 0.95691 0.88442 1.46068 1.12050 1.73380 1.00804 1.19002 1.13802 1.22715 0.79741 0.90550 1.24873 0.99948 0.97382 0.98231 1.69885 1.25652 1.27148 1.33625 0.86124 0.76956 0.77711 0.84974 1.21493 1.21592 1.20637 1.21705 0.92374 0.91294 0.88585 1.24591 0.95068 1.04396 0.95756 0.88014 0.91287 0.90761 0.90819 0.92211 0.92197 0.85929 0.85908 0.86015 0.85839 0.85827 0.76835 0.93016 0.95619 0.93572 0.94951 0.88988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.36 9.48 37.16 0.35 -1.01 16 2 C 0.07 0.74 3.13 -27.88 -0.09 0.65 16 3 H 0.09 0.63 7.79 -51.93 -0.40 0.22 16 4 O -0.35 -4.31 9.51 -55.09 -0.52 -4.83 16 5 C 0.10 0.88 5.87 36.00 0.21 1.09 16 6 C -0.09 -0.87 5.51 -104.63 -0.58 -1.44 16 7 C -0.10 -0.86 9.70 -39.58 -0.38 -1.24 16 8 C -0.13 -1.00 10.05 -39.58 -0.40 -1.40 16 9 C -0.11 -0.90 10.05 -39.58 -0.40 -1.30 16 10 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 11 C -0.10 -0.90 9.70 -39.58 -0.38 -1.29 16 12 C 0.51 7.44 7.18 -10.98 -0.08 7.36 16 13 O -0.52 -10.07 16.07 -14.31 -0.23 -10.30 16 14 N -0.70 -9.15 5.52 -53.80 -0.30 -9.45 16 15 C 0.10 1.62 5.97 -67.93 -0.41 1.22 16 16 H 0.13 2.57 7.40 -51.93 -0.38 2.18 16 17 C -0.18 -3.22 7.06 -89.22 -0.63 -3.85 16 18 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 19 C 0.16 3.36 7.05 -2.41 -0.02 3.35 16 20 N -0.60 -15.38 3.45 -165.70 -0.57 -15.96 16 21 C -0.22 -6.26 10.36 -15.06 -0.16 -6.42 16 22 H 0.08 2.06 7.85 -52.49 -0.41 1.64 16 23 C -0.01 -0.21 5.41 -17.43 -0.09 -0.30 16 24 N -0.92 -26.88 10.84 55.49 0.60 -26.27 16 25 Si 0.91 21.95 29.56 -169.99 -5.03 16.92 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 28 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 29 C 0.19 4.43 5.92 -0.29 0.00 4.42 16 30 C -0.18 -3.28 6.96 -89.22 -0.62 -3.90 16 31 H 0.10 1.69 8.14 -51.93 -0.42 1.27 16 32 H 0.07 0.42 7.87 -51.92 -0.41 0.01 16 33 H 0.07 0.48 7.92 -51.93 -0.41 0.07 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.44 8.03 -51.93 -0.42 0.03 16 36 H 0.06 0.39 7.81 -51.93 -0.41 -0.01 16 37 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 38 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 39 H 0.12 0.69 8.06 -52.49 -0.42 0.26 16 40 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 41 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 42 H 0.40 3.87 8.61 -40.82 -0.35 3.52 16 43 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 44 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 46 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.09 2.43 6.58 -51.93 -0.34 2.09 16 LS Contribution 393.04 15.07 5.92 5.92 Total: -1.00 -34.74 393.04 -11.51 -46.26 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -7.32 Total: 3.22 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: -4.07 Total: -5.51 kcal Atomic # 7 Polarization: -51.41 SS G_CDS: -0.27 Total: -51.68 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: -0.75 Total: -15.14 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.74 -11.51 -46.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114892036.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.387 kcal (2) G-P(sol) polarization free energy of solvation -34.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds