Wall clock time and date at job start Tue Mar 31 2020 16:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47221 * 2 1 4 4 O 1.42904 * 109.47466 * 120.00078 * 2 1 3 5 5 C 1.42898 * 113.99930 * 269.99940 * 4 2 1 6 6 C 1.50693 * 109.47311 * 179.97438 * 5 4 2 7 7 C 1.38235 * 120.00100 * 269.72773 * 6 5 4 8 8 C 1.38238 * 119.99960 * 179.78779 * 7 6 5 9 9 C 1.38242 * 119.99872 * 0.45925 * 8 7 6 10 10 C 1.38235 * 120.00247 * 359.77150 * 9 8 7 11 11 C 1.38238 * 119.99809 * 89.99663 * 6 5 4 12 12 C 1.50704 * 109.46771 * 239.99779 * 2 1 3 13 13 O 1.21283 * 119.99955 * 245.00025 * 12 2 1 14 14 N 1.34780 * 119.99817 * 65.00565 * 12 2 1 15 15 C 1.46503 * 119.99564 * 180.27441 * 14 12 2 16 16 H 1.08998 * 115.51521 * 9.30363 * 15 14 12 17 17 C 1.52998 * 117.43893 * 223.95652 * 15 14 12 18 18 H 1.09003 * 119.53898 * 4.12723 * 17 15 14 19 19 C 1.54390 * 118.11976 * 160.81160 * 17 15 14 20 20 N 1.48142 * 104.61891 * 87.19425 * 19 17 15 21 21 C 1.36935 * 127.84102 * 140.41274 * 20 19 17 22 22 H 1.08000 * 119.99740 * 344.91726 * 21 20 19 23 23 C 1.38814 * 120.00059 * 164.91213 * 21 20 19 24 24 N 1.31619 * 119.99981 * 350.66409 * 23 21 20 25 25 Si 1.86800 * 119.99833 * 170.66800 * 23 21 20 26 26 H 1.48496 * 109.47256 * 90.00028 * 25 23 21 27 27 H 1.48499 * 109.46702 * 210.00041 * 25 23 21 28 28 H 1.48505 * 109.46921 * 329.99583 * 25 23 21 29 29 C 1.51830 * 104.54762 * 320.13747 * 20 19 17 30 30 C 1.52999 * 117.43707 * 154.72139 * 15 14 12 31 31 H 1.09001 * 119.54463 * 355.87699 * 30 15 14 32 32 H 1.09009 * 109.46603 * 300.00278 * 1 2 3 33 33 H 1.09004 * 109.47320 * 59.99674 * 1 2 3 34 34 H 1.09000 * 109.47167 * 180.02562 * 1 2 3 35 35 H 1.08997 * 109.47087 * 299.99802 * 5 4 2 36 36 H 1.09005 * 109.47118 * 59.99572 * 5 4 2 37 37 H 1.07998 * 120.00128 * 359.97438 * 7 6 5 38 38 H 1.08001 * 120.00483 * 180.25359 * 8 7 6 39 39 H 1.07997 * 119.99716 * 179.79021 * 9 8 7 40 40 H 1.07993 * 120.00277 * 180.02562 * 10 9 8 41 41 H 1.07995 * 119.99976 * 359.97438 * 11 6 5 42 42 H 0.96999 * 119.99962 * 359.97438 * 14 12 2 43 43 H 1.09004 * 110.40775 * 205.98130 * 19 17 15 44 44 H 1.08998 * 110.40797 * 328.28635 * 19 17 15 45 45 H 0.96999 * 119.99784 * 180.02562 * 24 23 21 46 46 H 1.08997 * 111.95980 * 281.19473 * 29 20 19 47 47 H 1.09003 * 110.52727 * 157.59476 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.2002 0.1829 2.2940 6 6 2.7004 -0.6284 3.4613 7 6 1.8012 -1.1949 4.3452 8 6 2.2600 -1.9427 5.4135 9 6 3.6183 -2.1161 5.6032 10 6 4.5177 -1.5456 4.7220 11 6 4.0587 -0.8013 3.6512 12 6 2.0322 -0.7105 -1.2305 13 8 2.6529 -1.7468 -1.1215 14 7 1.7918 -0.1942 -2.4521 15 6 2.2749 -0.8880 -3.6485 16 1 2.6782 -1.8868 -3.4814 17 6 2.9276 -0.0386 -4.7409 18 1 3.0758 1.0285 -4.5752 19 6 3.8302 -0.7486 -5.7729 20 7 2.9013 -1.1966 -6.8364 21 6 3.1055 -1.1836 -8.1904 22 1 3.9134 -0.6019 -8.6090 23 6 2.2741 -1.9181 -9.0248 24 7 1.4104 -2.7679 -8.5109 25 14 2.3815 -1.7006 -10.8769 26 1 3.3712 -2.6587 -11.4314 27 1 1.0505 -1.9574 -11.4833 28 1 2.8078 -0.3126 -11.1884 29 6 1.6716 -1.6813 -6.0894 30 6 1.5239 -0.6408 -4.9584 31 1 0.6264 -0.0223 -4.9548 32 1 -0.3633 0.5139 0.8901 33 1 -0.3634 0.5139 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 2.9320 0.9513 2.0449 36 1 1.2539 0.6547 2.5588 37 1 0.7402 -1.0558 4.1996 38 1 1.5574 -2.3888 6.1018 39 1 3.9768 -2.6976 6.4397 40 1 5.5788 -1.6814 4.8700 41 1 4.7613 -0.3555 2.9629 42 1 1.2952 0.6345 -2.5392 43 1 4.5646 -0.0524 -6.1781 44 1 4.3294 -1.6034 -5.3168 45 1 0.8297 -3.2814 -9.0940 46 1 1.8146 -2.6782 -5.6724 47 1 0.7970 -1.6623 -6.7398 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114892036.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:31 Heat of formation + Delta-G solvation = -11.016525 kcal Electronic energy + Delta-G solvation = -26861.364228 eV Core-core repulsion = 23010.314744 eV Total energy + Delta-G solvation = -3851.049484 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.29615 -40.32948 -39.81012 -38.36491 -35.99831 -34.51690 -33.40087 -32.25855 -31.79412 -31.27820 -28.91784 -27.64753 -27.14075 -25.38017 -23.49230 -23.38405 -22.26586 -21.99032 -21.42445 -20.80907 -18.87218 -18.50863 -18.23758 -17.57614 -17.20557 -16.76997 -16.57668 -16.32236 -16.00684 -15.64702 -15.38018 -15.04558 -14.86957 -14.63032 -14.30623 -14.27158 -13.87817 -13.72779 -13.50840 -13.33240 -13.31818 -13.20751 -12.98222 -12.89474 -12.71786 -12.43186 -12.14929 -12.04210 -11.92603 -11.85014 -11.82952 -11.63912 -11.07039 -10.86556 -10.73809 -10.50729 -9.82520 -9.76600 -9.73318 -8.93589 -7.91055 -5.26569 0.31676 0.49650 1.46901 1.47217 1.48709 1.58365 1.71623 2.48506 2.67412 2.84429 3.16429 3.30069 3.49023 3.60549 3.81660 3.84928 3.89205 3.92043 3.98759 4.10530 4.12630 4.15233 4.28378 4.36139 4.37304 4.39967 4.51319 4.63580 4.72381 4.75674 4.77836 4.84386 4.89360 4.98188 5.07513 5.14843 5.22931 5.27015 5.38647 5.44184 5.51689 5.54123 5.60530 5.64047 5.65708 6.05098 6.10916 6.12072 6.53200 6.95241 7.20280 7.65062 8.44970 9.23610 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.031276 B = 0.001812 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.052046 B =15447.506958 C =15727.644698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.078 3.922 3 H 0.125 0.875 4 O -0.384 6.384 5 C 0.098 3.902 6 C -0.110 4.110 7 C -0.110 4.110 8 C -0.133 4.133 9 C -0.122 4.122 10 C -0.135 4.135 11 C -0.117 4.117 12 C 0.510 3.490 13 O -0.575 6.575 14 N -0.676 5.676 15 C 0.114 3.886 16 H 0.099 0.901 17 C -0.163 4.163 18 H 0.140 0.860 19 C 0.149 3.851 20 N -0.622 5.622 21 C -0.239 4.239 22 H 0.083 0.917 23 C -0.065 4.065 24 N -0.950 5.950 25 Si 0.982 3.018 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.266 1.266 29 C 0.186 3.814 30 C -0.173 4.173 31 H 0.131 0.869 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.049 0.951 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.137 0.863 38 H 0.144 0.856 39 H 0.143 0.857 40 H 0.138 0.862 41 H 0.124 0.876 42 H 0.421 0.579 43 H 0.064 0.936 44 H 0.013 0.987 45 H 0.250 0.750 46 H 0.002 0.998 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.987 11.941 28.776 31.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.017 3.983 3 H 0.143 0.857 4 O -0.303 6.303 5 C 0.022 3.978 6 C -0.110 4.110 7 C -0.128 4.128 8 C -0.151 4.151 9 C -0.140 4.140 10 C -0.153 4.153 11 C -0.135 4.135 12 C 0.298 3.702 13 O -0.453 6.453 14 N -0.328 5.328 15 C 0.006 3.994 16 H 0.117 0.883 17 C -0.184 4.184 18 H 0.158 0.842 19 C 0.024 3.976 20 N -0.348 5.348 21 C -0.367 4.367 22 H 0.100 0.900 23 C -0.259 4.259 24 N -0.598 5.598 25 Si 0.809 3.191 26 H -0.214 1.214 27 H -0.219 1.219 28 H -0.191 1.191 29 C 0.061 3.939 30 C -0.194 4.194 31 H 0.149 0.851 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.155 0.845 38 H 0.162 0.838 39 H 0.161 0.839 40 H 0.156 0.844 41 H 0.142 0.858 42 H 0.259 0.741 43 H 0.083 0.917 44 H 0.031 0.969 45 H 0.059 0.941 46 H 0.020 0.980 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.572 10.943 28.652 30.711 hybrid contribution -0.090 -0.096 -1.325 1.331 sum -1.662 10.848 27.327 29.448 Atomic orbital electron populations 1.22262 0.91367 1.03359 1.05394 1.22003 0.96419 0.96846 0.83023 0.85726 1.88121 1.86918 1.35659 1.19623 1.21615 1.01331 0.91377 0.83467 1.19821 0.93987 1.00869 0.96314 1.21342 1.00185 0.96679 0.94588 1.21495 0.96385 0.98877 0.98314 1.21550 0.93551 0.99177 0.99757 1.21453 1.00965 0.97853 0.95054 1.21322 0.95355 0.98850 0.97939 1.21240 0.78693 0.85046 0.85270 1.90723 1.41789 1.25759 1.87051 1.45064 1.56918 1.27500 1.03357 1.21364 1.00926 0.96443 0.80632 0.88327 1.24289 0.95452 1.00114 0.98542 0.84234 1.21197 0.92121 0.95792 0.88506 1.46398 1.13657 1.73573 1.01129 1.19412 1.13729 1.22391 0.81187 0.89961 1.25742 0.99964 0.97400 1.02762 1.70089 1.26570 1.28218 1.34886 0.85045 0.76528 0.78120 0.79383 1.21426 1.21875 1.19115 1.21449 0.90918 0.91727 0.89773 1.24278 0.96840 1.03240 0.95030 0.85109 0.88658 0.88741 0.93148 0.90981 0.89646 0.84543 0.83848 0.83915 0.84415 0.85753 0.74126 0.91749 0.96923 0.94135 0.98020 0.91931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.11 9.48 71.98 0.68 -1.42 16 2 C 0.08 1.39 3.13 29.85 0.09 1.48 16 3 H 0.13 1.26 7.79 -2.39 -0.02 1.24 16 4 O -0.38 -8.96 9.51 -129.99 -1.24 -10.20 16 5 C 0.10 1.52 5.87 71.23 0.42 1.94 16 6 C -0.11 -2.04 5.51 -19.87 -0.11 -2.15 16 7 C -0.11 -1.80 9.70 22.27 0.22 -1.59 16 8 C -0.13 -1.95 10.05 22.27 0.22 -1.73 16 9 C -0.12 -1.80 10.05 22.27 0.22 -1.57 16 10 C -0.14 -2.22 10.05 22.27 0.22 -2.00 16 11 C -0.12 -2.19 9.70 22.27 0.22 -1.98 16 12 C 0.51 14.08 7.18 87.66 0.63 14.71 16 13 O -0.58 -22.95 16.07 15.95 0.26 -22.69 16 14 N -0.68 -16.14 5.52 -442.52 -2.44 -18.59 16 15 C 0.11 3.74 5.97 44.99 0.27 4.01 16 16 H 0.10 4.01 7.40 -2.39 -0.02 3.99 16 17 C -0.16 -5.44 7.06 -9.89 -0.07 -5.51 16 18 H 0.14 3.72 8.14 -2.39 -0.02 3.70 16 19 C 0.15 6.35 7.05 86.54 0.61 6.96 16 20 N -0.62 -32.57 3.45 -678.16 -2.34 -34.91 16 21 C -0.24 -13.46 10.36 84.03 0.87 -12.59 16 22 H 0.08 4.42 7.85 -2.91 -0.02 4.39 16 23 C -0.07 -3.73 5.41 84.86 0.46 -3.27 16 24 N -0.95 -57.59 10.84 21.65 0.23 -57.35 16 25 Si 0.98 45.62 29.56 68.60 2.03 47.65 16 26 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 27 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 28 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 29 C 0.19 9.22 5.92 85.80 0.51 9.73 16 30 C -0.17 -6.24 6.96 -9.89 -0.07 -6.31 16 31 H 0.13 3.99 8.14 -2.39 -0.02 3.97 16 32 H 0.09 0.74 7.87 -2.38 -0.02 0.72 16 33 H 0.09 0.81 7.92 -2.39 -0.02 0.79 16 34 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.07 0.90 8.03 -2.39 -0.02 0.88 16 36 H 0.09 0.84 7.81 -2.38 -0.02 0.83 16 37 H 0.14 1.71 8.06 -2.91 -0.02 1.69 16 38 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 39 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 40 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 41 H 0.12 2.15 8.06 -2.91 -0.02 2.13 16 42 H 0.42 6.37 8.61 -92.71 -0.80 5.57 16 43 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 44 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 45 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 46 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 47 H 0.06 3.45 6.58 -2.39 -0.02 3.43 16 Total: -1.00 -80.16 393.04 2.06 -78.10 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: 0.17 Total: 19.29 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: 5.40 Total: -1.30 kcal Atomic # 7 Polarization: -106.30 SS G_CDS: -4.55 Total: -110.85 kcal Atomic # 8 Polarization: -31.91 SS G_CDS: -0.98 Total: -32.89 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -80.16 2.06 -78.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114892036.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.086 kcal (2) G-P(sol) polarization free energy of solvation -80.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds