Wall clock time and date at job start Tue Mar 31 2020 16:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46872 * 2 1 4 4 C 1.53004 * 109.47124 * 240.00164 * 2 1 3 5 5 O 1.42897 * 109.46909 * 65.00209 * 4 2 1 6 6 C 1.35904 * 116.99559 * 179.97438 * 5 4 2 7 7 C 1.38731 * 120.05587 * 359.72859 * 6 5 4 8 8 C 1.38152 * 119.94054 * 179.69833 * 7 6 5 9 9 C 1.38261 * 120.05291 * 0.59737 * 8 7 6 10 10 C 1.38266 * 120.11756 * 359.67492 * 9 8 7 11 11 C 1.38144 * 120.05145 * 0.02562 * 10 9 8 12 12 C 1.50697 * 109.46795 * 120.00158 * 2 1 3 13 13 O 1.21279 * 119.99784 * 119.72975 * 12 2 1 14 14 N 1.34781 * 120.00195 * 299.99761 * 12 2 1 15 15 C 1.46494 * 120.00210 * 180.02562 * 14 12 2 16 16 H 1.09006 * 115.51373 * 9.58524 * 15 14 12 17 17 C 1.53000 * 117.44420 * 224.24330 * 15 14 12 18 18 H 1.08996 * 119.53863 * 4.11836 * 17 15 14 19 19 C 1.57695 * 116.11262 * 161.63511 * 17 15 14 20 20 N 1.48151 * 104.67195 * 87.30836 * 19 17 15 21 21 C 1.36930 * 127.83499 * 139.77571 * 20 19 17 22 22 H 1.07999 * 120.00546 * 344.33224 * 21 20 19 23 23 C 1.38818 * 119.99903 * 164.34021 * 21 20 19 24 24 N 1.31615 * 119.99902 * 350.56515 * 23 21 20 25 25 Si 1.86798 * 120.00157 * 170.57041 * 23 21 20 26 26 H 1.48495 * 109.47259 * 89.99520 * 25 23 21 27 27 H 1.48498 * 109.47002 * 209.99904 * 25 23 21 28 28 H 1.48500 * 109.47055 * 329.99255 * 25 23 21 29 29 C 1.48149 * 104.32446 * 319.77283 * 20 19 17 30 30 C 1.52995 * 117.44717 * 155.00099 * 15 14 12 31 31 H 1.09007 * 119.53781 * 355.88426 * 30 15 14 32 32 H 1.09003 * 109.47062 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47365 * 299.99721 * 1 2 3 34 34 H 1.09004 * 109.47281 * 60.00144 * 1 2 3 35 35 H 1.09003 * 109.46693 * 184.99856 * 4 2 1 36 36 H 1.08996 * 109.47130 * 304.99795 * 4 2 1 37 37 H 1.08000 * 120.03061 * 359.97438 * 7 6 5 38 38 H 1.08000 * 119.96744 * 180.26774 * 8 7 6 39 39 H 1.08005 * 119.94099 * 179.70532 * 9 8 7 40 40 H 1.08001 * 119.97463 * 180.02562 * 10 9 8 41 41 H 1.08000 * 120.02805 * 180.02562 * 11 10 9 42 42 H 0.97003 * 119.99395 * 0.02562 * 14 12 2 43 43 H 1.08995 * 110.92349 * 328.23261 * 19 17 15 44 44 H 1.08997 * 109.93764 * 205.88715 * 19 17 15 45 45 H 0.97003 * 120.00404 * 180.02562 * 24 23 21 46 46 H 1.09000 * 110.41022 * 280.80444 * 29 20 19 47 47 H 1.08997 * 110.40461 * 158.36849 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 1.6620 0.0169 -2.4130 6 6 2.0406 -0.4908 -3.6155 7 6 2.7660 -1.6719 -3.6738 8 6 3.1443 -2.1891 -4.8977 9 6 2.8112 -1.5241 -6.0632 10 6 2.0932 -0.3438 -6.0076 11 6 1.7073 0.1743 -4.7865 12 6 2.0322 -0.7104 1.2304 13 8 2.7254 -1.6994 1.1191 14 7 1.7066 -0.2500 2.4546 15 6 2.1953 -0.9403 3.6507 16 1 2.9431 -1.7135 3.4740 17 6 1.1986 -1.1714 4.7882 18 1 0.1555 -0.8844 4.6553 19 6 1.5921 -2.2765 5.8421 20 7 2.4125 -1.5612 6.8472 21 6 2.3948 -1.7133 8.2080 22 1 1.5698 -2.2226 8.6838 23 6 3.4371 -1.2126 8.9759 24 7 4.5261 -0.7595 8.3919 25 14 3.2943 -1.1821 10.8382 26 1 3.8231 -2.4526 11.3961 27 1 4.0780 -0.0412 11.3761 28 1 1.8683 -1.0280 11.2228 29 6 3.2564 -0.6442 6.0461 30 6 2.3187 -0.1209 4.9369 31 1 2.1100 0.9487 4.9147 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 -0.3634 0.5138 -0.8900 35 1 3.1263 -0.7994 -1.2056 36 1 1.6054 -1.7198 -1.2952 37 1 3.0309 -2.1890 -2.7633 38 1 3.7053 -3.1108 -4.9437 39 1 3.1120 -1.9276 -7.0188 40 1 1.8339 0.1736 -6.9195 41 1 1.1461 1.0960 -4.7435 42 1 1.1487 0.5385 2.5435 43 1 2.1724 -3.0716 5.3741 44 1 0.6940 -2.6847 6.3056 45 1 5.2547 -0.4099 8.9285 46 1 4.0966 -1.1845 5.6099 47 1 3.6128 0.1807 6.6630 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115248277.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:11 Heat of formation + Delta-G solvation = 9.090960 kcal Electronic energy + Delta-G solvation = -26848.430301 eV Core-core repulsion = 22998.252743 eV Total energy + Delta-G solvation = -3850.177558 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.61004 -39.90820 -38.45050 -37.63640 -34.58520 -34.13518 -32.52840 -31.31234 -30.32344 -29.95171 -27.10163 -27.05656 -25.79105 -24.19394 -22.88865 -22.25901 -21.34571 -20.53199 -19.84258 -19.31633 -18.70202 -17.05970 -16.92763 -16.51812 -16.32285 -16.15677 -15.85390 -15.03223 -14.84233 -14.70003 -14.17242 -14.04365 -13.72191 -13.59496 -13.37781 -13.27913 -12.85201 -12.76860 -12.52990 -12.26762 -12.07674 -11.89651 -11.58656 -11.53729 -11.47624 -11.07847 -11.01145 -10.99868 -10.85125 -10.39875 -10.25456 -10.19031 -9.86151 -9.75530 -9.31811 -9.25473 -8.77346 -8.50670 -8.38831 -6.90190 -5.82830 -3.17027 1.02621 1.14065 2.49277 2.55724 3.32009 3.37463 3.42154 3.43964 3.48739 4.23860 4.26627 4.44163 4.52203 4.54149 4.57577 4.64937 4.82670 4.97029 5.02338 5.08445 5.12384 5.24045 5.27744 5.32555 5.34902 5.36675 5.43599 5.54034 5.60094 5.69107 5.70144 5.82100 5.83947 6.00593 6.09539 6.11060 6.18211 6.22324 6.45972 6.47677 6.65564 6.73351 6.84999 7.10729 7.30978 7.46579 7.49796 7.68385 8.14378 8.17071 9.07723 9.70649 10.47440 11.31665 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.037753 B = 0.001745 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.493316 B =16039.363962 C =16304.168948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.109 4.109 3 H 0.109 0.891 4 C 0.079 3.921 5 O -0.315 6.315 6 C 0.134 3.866 7 C -0.208 4.208 8 C -0.080 4.080 9 C -0.162 4.162 10 C -0.083 4.083 11 C -0.155 4.155 12 C 0.524 3.476 13 O -0.539 6.539 14 N -0.692 5.692 15 C 0.092 3.908 16 H 0.132 0.868 17 C -0.184 4.184 18 H 0.107 0.893 19 C 0.158 3.842 20 N -0.593 5.593 21 C -0.228 4.228 22 H 0.077 0.923 23 C -0.005 4.005 24 N -0.915 5.915 25 Si 0.913 3.087 26 H -0.287 1.287 27 H -0.289 1.289 28 H -0.280 1.280 29 C 0.185 3.815 30 C -0.179 4.179 31 H 0.101 0.899 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.131 0.869 38 H 0.125 0.875 39 H 0.122 0.878 40 H 0.127 0.873 41 H 0.129 0.871 42 H 0.400 0.600 43 H 0.030 0.970 44 H 0.050 0.950 45 H 0.255 0.745 46 H 0.026 0.974 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.409 3.430 -26.626 27.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.130 4.130 3 H 0.127 0.873 4 C 0.003 3.997 5 O -0.229 6.229 6 C 0.088 3.912 7 C -0.227 4.227 8 C -0.098 4.098 9 C -0.180 4.180 10 C -0.101 4.101 11 C -0.174 4.174 12 C 0.310 3.690 13 O -0.416 6.416 14 N -0.341 5.341 15 C -0.014 4.014 16 H 0.150 0.850 17 C -0.206 4.206 18 H 0.125 0.875 19 C 0.030 3.970 20 N -0.316 5.316 21 C -0.356 4.356 22 H 0.095 0.905 23 C -0.202 4.202 24 N -0.561 5.561 25 Si 0.743 3.257 26 H -0.214 1.214 27 H -0.215 1.215 28 H -0.206 1.206 29 C 0.059 3.941 30 C -0.200 4.200 31 H 0.119 0.881 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.149 0.851 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.145 0.855 41 H 0.147 0.853 42 H 0.234 0.766 43 H 0.048 0.952 44 H 0.069 0.931 45 H 0.065 0.935 46 H 0.044 0.956 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.867 2.931 -26.384 27.420 hybrid contribution -0.222 0.385 1.066 1.155 sum -7.089 3.316 -25.318 26.500 Atomic orbital electron populations 1.21770 0.91869 1.03162 1.03248 1.21168 0.98650 1.01666 0.91536 0.87255 1.22509 1.00592 0.94733 0.81826 1.85963 1.74259 1.50254 1.12408 1.19005 0.94240 0.92567 0.85356 1.21404 1.03985 0.97636 0.99627 1.20997 0.97775 0.99179 0.91837 1.21076 1.01825 0.96749 0.98380 1.20963 0.96695 0.95601 0.96872 1.20449 1.05087 1.01836 0.89977 1.20161 0.80066 0.84512 0.84249 1.90726 1.38071 1.26068 1.86702 1.45341 1.52638 1.31203 1.04883 1.21924 1.00480 0.99370 0.79598 0.85047 1.25095 0.94885 1.01756 0.98848 0.87530 1.21693 0.94880 0.91488 0.88897 1.45120 1.43577 1.41541 1.01336 1.18979 1.03317 1.33761 0.79578 0.90516 1.24906 0.95164 1.01798 0.98360 1.69895 1.05595 1.46526 1.34046 0.86111 0.77416 0.77331 0.84827 1.21404 1.21539 1.20558 1.21065 0.89901 0.94710 0.88394 1.24642 1.02641 0.96447 0.96309 0.88064 0.91864 0.91696 0.90620 0.90767 0.90970 0.85080 0.85751 0.85993 0.85458 0.85255 0.76597 0.95192 0.93110 0.93496 0.95569 0.89108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 8.99 37.16 0.33 -0.78 16 2 C -0.11 -1.02 2.96 -91.77 -0.27 -1.30 16 3 H 0.11 0.88 8.14 -51.93 -0.42 0.45 16 4 C 0.08 0.80 3.47 37.16 0.13 0.93 16 5 O -0.32 -3.26 9.67 -19.44 -0.19 -3.44 16 6 C 0.13 1.36 6.69 -39.22 -0.26 1.10 16 7 C -0.21 -2.02 9.04 -39.43 -0.36 -2.37 16 8 C -0.08 -0.67 10.04 -39.60 -0.40 -1.07 16 9 C -0.16 -1.22 10.04 -39.56 -0.40 -1.62 16 10 C -0.08 -0.62 10.04 -39.61 -0.40 -1.02 16 11 C -0.15 -1.36 9.99 -39.43 -0.39 -1.75 16 12 C 0.52 6.81 7.15 -10.98 -0.08 6.73 16 13 O -0.54 -9.10 15.49 5.56 0.09 -9.02 16 14 N -0.69 -8.72 5.46 -53.81 -0.29 -9.02 16 15 C 0.09 1.50 5.92 -67.94 -0.40 1.10 16 16 H 0.13 2.47 7.40 -51.93 -0.38 2.08 16 17 C -0.18 -3.19 7.34 -87.38 -0.64 -3.83 16 18 H 0.11 1.63 8.14 -51.93 -0.42 1.21 16 19 C 0.16 3.29 7.10 -0.57 0.00 3.29 16 20 N -0.59 -15.06 3.38 -166.73 -0.56 -15.62 16 21 C -0.23 -6.31 10.35 -15.06 -0.16 -6.46 16 22 H 0.08 2.04 7.85 -52.49 -0.41 1.63 16 23 C -0.01 -0.14 5.40 -17.43 -0.09 -0.24 16 24 N -0.91 -26.60 10.88 55.49 0.60 -26.00 16 25 Si 0.91 21.73 29.56 -169.99 -5.03 16.70 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 28 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 29 C 0.19 4.40 5.70 -2.41 -0.01 4.39 16 30 C -0.18 -3.28 6.98 -89.22 -0.62 -3.91 16 31 H 0.10 1.69 8.14 -51.93 -0.42 1.26 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.42 7.56 -51.93 -0.39 0.03 16 34 H 0.07 0.55 7.82 -51.93 -0.41 0.14 16 35 H 0.07 0.81 7.47 -51.93 -0.39 0.42 16 36 H 0.07 0.75 7.68 -51.93 -0.40 0.35 16 37 H 0.13 1.23 6.30 -52.49 -0.33 0.90 16 38 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 39 H 0.12 0.66 8.06 -52.48 -0.42 0.23 16 40 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 41 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 42 H 0.40 3.88 8.24 -40.82 -0.34 3.54 16 43 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 46 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.09 2.40 6.53 -51.93 -0.34 2.06 16 LS Contribution 387.34 15.07 5.84 5.84 Total: -1.00 -32.23 387.34 -10.74 -42.97 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -7.17 Total: 4.38 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -4.03 Total: -6.80 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: -0.25 Total: -50.64 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: -0.10 Total: -12.46 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.23 -10.74 -42.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115248277.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.065 kcal (2) G-P(sol) polarization free energy of solvation -32.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds