Wall clock time and date at job start Tue Mar 31 2020 16:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46872 * 2 1 4 4 C 1.53004 * 109.47124 * 240.00164 * 2 1 3 5 5 O 1.42897 * 109.46909 * 65.00209 * 4 2 1 6 6 C 1.35904 * 116.99559 * 179.97438 * 5 4 2 7 7 C 1.38731 * 120.05587 * 359.72859 * 6 5 4 8 8 C 1.38152 * 119.94054 * 179.69833 * 7 6 5 9 9 C 1.38261 * 120.05291 * 0.59737 * 8 7 6 10 10 C 1.38266 * 120.11756 * 359.67492 * 9 8 7 11 11 C 1.38144 * 120.05145 * 0.02562 * 10 9 8 12 12 C 1.50697 * 109.46795 * 120.00158 * 2 1 3 13 13 O 1.21279 * 119.99784 * 119.72975 * 12 2 1 14 14 N 1.34781 * 120.00195 * 299.99761 * 12 2 1 15 15 C 1.46494 * 120.00210 * 180.02562 * 14 12 2 16 16 H 1.09006 * 115.51373 * 9.58524 * 15 14 12 17 17 C 1.53000 * 117.44420 * 224.24330 * 15 14 12 18 18 H 1.08996 * 119.53863 * 4.11836 * 17 15 14 19 19 C 1.57695 * 116.11262 * 161.63511 * 17 15 14 20 20 N 1.48151 * 104.67195 * 87.30836 * 19 17 15 21 21 C 1.36930 * 127.83499 * 139.77571 * 20 19 17 22 22 H 1.07999 * 120.00546 * 344.33224 * 21 20 19 23 23 C 1.38818 * 119.99903 * 164.34021 * 21 20 19 24 24 N 1.31615 * 119.99902 * 350.56515 * 23 21 20 25 25 Si 1.86798 * 120.00157 * 170.57041 * 23 21 20 26 26 H 1.48495 * 109.47259 * 89.99520 * 25 23 21 27 27 H 1.48498 * 109.47002 * 209.99904 * 25 23 21 28 28 H 1.48500 * 109.47055 * 329.99255 * 25 23 21 29 29 C 1.48149 * 104.32446 * 319.77283 * 20 19 17 30 30 C 1.52995 * 117.44717 * 155.00099 * 15 14 12 31 31 H 1.09007 * 119.53781 * 355.88426 * 30 15 14 32 32 H 1.09003 * 109.47062 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47365 * 299.99721 * 1 2 3 34 34 H 1.09004 * 109.47281 * 60.00144 * 1 2 3 35 35 H 1.09003 * 109.46693 * 184.99856 * 4 2 1 36 36 H 1.08996 * 109.47130 * 304.99795 * 4 2 1 37 37 H 1.08000 * 120.03061 * 359.97438 * 7 6 5 38 38 H 1.08000 * 119.96744 * 180.26774 * 8 7 6 39 39 H 1.08005 * 119.94099 * 179.70532 * 9 8 7 40 40 H 1.08001 * 119.97463 * 180.02562 * 10 9 8 41 41 H 1.08000 * 120.02805 * 180.02562 * 11 10 9 42 42 H 0.97003 * 119.99395 * 0.02562 * 14 12 2 43 43 H 1.08995 * 110.92349 * 328.23261 * 19 17 15 44 44 H 1.08997 * 109.93764 * 205.88715 * 19 17 15 45 45 H 0.97003 * 120.00404 * 180.02562 * 24 23 21 46 46 H 1.09000 * 110.41022 * 280.80444 * 29 20 19 47 47 H 1.08997 * 110.40461 * 158.36849 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 1.6620 0.0169 -2.4130 6 6 2.0406 -0.4908 -3.6155 7 6 2.7660 -1.6719 -3.6738 8 6 3.1443 -2.1891 -4.8977 9 6 2.8112 -1.5241 -6.0632 10 6 2.0932 -0.3438 -6.0076 11 6 1.7073 0.1743 -4.7865 12 6 2.0322 -0.7104 1.2304 13 8 2.7254 -1.6994 1.1191 14 7 1.7066 -0.2500 2.4546 15 6 2.1953 -0.9403 3.6507 16 1 2.9431 -1.7135 3.4740 17 6 1.1986 -1.1714 4.7882 18 1 0.1555 -0.8844 4.6553 19 6 1.5921 -2.2765 5.8421 20 7 2.4125 -1.5612 6.8472 21 6 2.3948 -1.7133 8.2080 22 1 1.5698 -2.2226 8.6838 23 6 3.4371 -1.2126 8.9759 24 7 4.5261 -0.7595 8.3919 25 14 3.2943 -1.1821 10.8382 26 1 3.8231 -2.4526 11.3961 27 1 4.0780 -0.0412 11.3761 28 1 1.8683 -1.0280 11.2228 29 6 3.2564 -0.6442 6.0461 30 6 2.3187 -0.1209 4.9369 31 1 2.1100 0.9487 4.9147 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 -0.3634 0.5138 -0.8900 35 1 3.1263 -0.7994 -1.2056 36 1 1.6054 -1.7198 -1.2952 37 1 3.0309 -2.1890 -2.7633 38 1 3.7053 -3.1108 -4.9437 39 1 3.1120 -1.9276 -7.0188 40 1 1.8339 0.1736 -6.9195 41 1 1.1461 1.0960 -4.7435 42 1 1.1487 0.5385 2.5435 43 1 2.1724 -3.0716 5.3741 44 1 0.6940 -2.6847 6.3056 45 1 5.2547 -0.4099 8.9285 46 1 4.0966 -1.1845 5.6099 47 1 3.6128 0.1807 6.6630 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115248277.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:10 Heat of formation + Delta-G solvation = -9.988690 kcal Electronic energy + Delta-G solvation = -26849.257656 eV Core-core repulsion = 22998.252743 eV Total energy + Delta-G solvation = -3851.004914 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.51529 -40.89932 -39.86546 -38.38225 -36.13161 -35.10892 -34.09897 -32.09754 -31.88238 -30.66975 -28.81371 -27.84034 -27.61755 -25.22496 -23.66067 -23.28047 -22.55583 -21.99975 -21.01403 -20.80739 -19.44963 -18.85595 -17.95511 -17.75478 -17.18900 -16.86562 -16.77305 -16.59077 -16.02683 -15.74221 -15.41271 -15.11776 -14.83683 -14.73998 -14.63193 -14.32376 -14.13669 -13.78477 -13.50602 -13.35386 -13.28836 -13.18101 -12.87357 -12.73847 -12.70864 -12.47535 -12.19390 -12.11707 -12.01221 -11.89454 -11.82391 -11.69361 -11.67944 -11.01721 -10.84258 -10.70452 -9.94990 -9.74550 -9.18175 -8.93922 -7.93276 -5.30016 0.39441 0.49132 1.42970 1.46734 1.48089 1.57998 1.62546 2.37562 2.49087 2.84527 2.85197 3.27428 3.41464 3.59888 3.74008 3.79206 3.82368 3.91653 3.94446 4.00139 4.06915 4.18815 4.28239 4.30989 4.35791 4.48902 4.51152 4.52073 4.59801 4.74482 4.80901 4.85276 4.87433 4.95112 4.97240 5.09528 5.25504 5.26540 5.37303 5.39554 5.43445 5.49693 5.51695 5.61210 5.63139 5.85179 6.15097 6.37648 6.44992 6.98817 7.12468 7.65887 8.44294 9.20799 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.037753 B = 0.001745 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.493316 B =16039.363962 C =16304.168948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.096 4.096 3 H 0.132 0.868 4 C 0.083 3.917 5 O -0.317 6.317 6 C 0.110 3.890 7 C -0.226 4.226 8 C -0.091 4.091 9 C -0.163 4.163 10 C -0.083 4.083 11 C -0.164 4.164 12 C 0.525 3.475 13 O -0.582 6.582 14 N -0.677 5.677 15 C 0.113 3.887 16 H 0.104 0.896 17 C -0.163 4.163 18 H 0.143 0.857 19 C 0.148 3.852 20 N -0.617 5.617 21 C -0.242 4.242 22 H 0.083 0.917 23 C -0.063 4.063 24 N -0.948 5.948 25 Si 0.982 3.018 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.266 1.266 29 C 0.189 3.811 30 C -0.179 4.179 31 H 0.127 0.873 32 H 0.054 0.946 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.123 0.877 38 H 0.139 0.861 39 H 0.146 0.854 40 H 0.156 0.844 41 H 0.142 0.858 42 H 0.420 0.580 43 H 0.020 0.980 44 H 0.062 0.938 45 H 0.250 0.750 46 H -0.005 1.005 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.703 4.652 -28.361 30.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.118 4.118 3 H 0.149 0.851 4 C 0.007 3.993 5 O -0.231 6.231 6 C 0.065 3.935 7 C -0.245 4.245 8 C -0.109 4.109 9 C -0.181 4.181 10 C -0.101 4.101 11 C -0.182 4.182 12 C 0.313 3.687 13 O -0.462 6.462 14 N -0.327 5.327 15 C 0.006 3.994 16 H 0.122 0.878 17 C -0.184 4.184 18 H 0.161 0.839 19 C 0.022 3.978 20 N -0.341 5.341 21 C -0.371 4.371 22 H 0.101 0.899 23 C -0.256 4.256 24 N -0.596 5.596 25 Si 0.810 3.190 26 H -0.213 1.213 27 H -0.219 1.219 28 H -0.191 1.191 29 C 0.063 3.937 30 C -0.200 4.200 31 H 0.145 0.855 32 H 0.074 0.926 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.141 0.859 38 H 0.157 0.843 39 H 0.164 0.836 40 H 0.174 0.826 41 H 0.159 0.841 42 H 0.258 0.742 43 H 0.038 0.962 44 H 0.080 0.920 45 H 0.059 0.941 46 H 0.012 0.988 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.212 4.170 -28.154 29.914 hybrid contribution 0.538 -0.085 1.475 1.572 sum -8.674 4.085 -26.679 28.349 Atomic orbital electron populations 1.21784 0.90025 1.03134 1.04687 1.21112 0.99907 1.01825 0.88913 0.85072 1.22392 0.99741 0.94681 0.82497 1.85929 1.74462 1.50256 1.12455 1.19288 0.95317 0.93252 0.85680 1.21494 1.04848 0.98047 1.00083 1.21274 0.97908 0.99911 0.91762 1.21438 1.01060 0.96611 0.99034 1.21351 0.95752 0.95506 0.97451 1.20734 1.05219 1.02302 0.89966 1.20798 0.78993 0.83894 0.85060 1.90722 1.39975 1.28179 1.87277 1.45112 1.52575 1.31530 1.03490 1.21423 0.99468 0.98120 0.80421 0.87828 1.25002 0.96414 0.99126 0.97855 0.83942 1.21832 0.94509 0.92309 0.89138 1.45420 1.44308 1.42772 1.01558 1.19391 1.03397 1.33219 0.81051 0.89916 1.25774 0.94928 1.02016 1.02911 1.70099 1.06285 1.47768 1.35425 0.85038 0.77841 0.76890 0.79265 1.21265 1.21871 1.19088 1.20797 0.90334 0.93197 0.89418 1.24312 1.01808 0.97881 0.96016 0.85490 0.92649 0.89718 0.89712 0.92192 0.91797 0.85876 0.84349 0.83575 0.82637 0.84052 0.74229 0.96222 0.91956 0.94069 0.98755 0.92308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 8.99 71.98 0.65 -1.12 16 2 C -0.10 -1.64 2.96 -11.54 -0.03 -1.67 16 3 H 0.13 1.72 8.14 -2.38 -0.02 1.70 16 4 C 0.08 1.67 3.47 71.98 0.25 1.92 16 5 O -0.32 -6.34 9.67 -92.47 -0.89 -7.24 16 6 C 0.11 2.19 6.69 22.51 0.15 2.34 16 7 C -0.23 -4.46 9.04 22.37 0.20 -4.25 16 8 C -0.09 -1.45 10.04 22.25 0.22 -1.23 16 9 C -0.16 -2.14 10.04 22.28 0.22 -1.92 16 10 C -0.08 -1.05 10.04 22.25 0.22 -0.83 16 11 C -0.16 -2.64 9.99 22.37 0.22 -2.42 16 12 C 0.52 12.97 7.15 87.66 0.63 13.60 16 13 O -0.58 -19.89 15.49 -3.03 -0.05 -19.93 16 14 N -0.68 -15.47 5.46 -442.54 -2.41 -17.88 16 15 C 0.11 3.57 5.92 44.99 0.27 3.84 16 16 H 0.10 3.98 7.40 -2.38 -0.02 3.97 16 17 C -0.16 -5.30 7.34 -8.70 -0.06 -5.36 16 18 H 0.14 3.71 8.14 -2.39 -0.02 3.69 16 19 C 0.15 6.16 7.10 87.73 0.62 6.79 16 20 N -0.62 -31.95 3.38 -681.40 -2.30 -34.25 16 21 C -0.24 -13.55 10.35 84.04 0.87 -12.68 16 22 H 0.08 4.40 7.85 -2.91 -0.02 4.38 16 23 C -0.06 -3.55 5.40 84.86 0.46 -3.09 16 24 N -0.95 -57.18 10.88 21.65 0.24 -56.94 16 25 Si 0.98 45.26 29.56 68.60 2.03 47.28 16 26 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 27 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 28 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 29 C 0.19 9.29 5.70 86.53 0.49 9.78 16 30 C -0.18 -6.41 6.98 -9.89 -0.07 -6.48 16 31 H 0.13 3.92 8.14 -2.38 -0.02 3.90 16 32 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.08 0.76 7.56 -2.39 -0.02 0.74 16 34 H 0.08 0.98 7.82 -2.38 -0.02 0.96 16 35 H 0.06 1.36 7.47 -2.39 -0.02 1.34 16 36 H 0.06 1.37 7.68 -2.39 -0.02 1.35 16 37 H 0.12 2.50 6.30 -2.91 -0.02 2.48 16 38 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 39 H 0.15 1.15 8.06 -2.91 -0.02 1.13 16 40 H 0.16 1.02 8.06 -2.91 -0.02 1.00 16 41 H 0.14 1.83 8.06 -2.91 -0.02 1.80 16 42 H 0.42 6.48 8.24 -92.71 -0.76 5.72 16 43 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 45 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 46 H -0.01 -0.30 8.14 -2.39 -0.02 -0.31 16 47 H 0.06 3.25 6.53 -2.39 -0.02 3.23 16 Total: -1.00 -73.20 387.34 2.13 -71.07 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: 0.21 Total: 20.68 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: 5.31 Total: -2.78 kcal Atomic # 7 Polarization: -104.60 SS G_CDS: -4.48 Total: -109.08 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -0.94 Total: -27.17 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.28 kcal Total: -73.20 2.13 -71.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115248277.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.082 kcal (2) G-P(sol) polarization free energy of solvation -73.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds