Wall clock time and date at job start Tue Mar 31 2020 17:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46495 * 109.46971 * 2 1 4 4 C 1.36878 * 120.00113 * 278.70989 * 3 2 1 5 5 H 1.07999 * 119.99881 * 138.25539 * 4 3 2 6 6 C 1.39048 * 119.99780 * 318.25223 * 4 3 2 7 7 N 1.31364 * 120.00071 * 164.53678 * 6 4 3 8 8 Si 1.86796 * 120.00158 * 344.53726 * 6 4 3 9 9 H 1.48497 * 109.47189 * 91.64565 * 8 6 4 10 10 H 1.48501 * 109.47326 * 211.64530 * 8 6 4 11 11 H 1.48505 * 109.47047 * 331.64323 * 8 6 4 12 12 C 1.34774 * 120.00006 * 98.71037 * 3 2 1 13 13 O 1.21595 * 120.00282 * 178.16530 * 12 3 2 14 14 C 1.47741 * 120.00231 * 358.17074 * 12 3 2 15 15 C 1.39761 * 120.08542 * 131.09616 * 14 12 3 16 16 C 1.38039 * 120.14062 * 180.02562 * 15 14 12 17 17 C 1.38106 * 120.30147 * 359.97211 * 16 15 14 18 18 C 1.39682 * 120.16026 * 359.77547 * 17 16 15 19 19 C 1.47861 * 120.07097 * 180.25714 * 18 17 16 20 20 O 1.21552 * 119.99922 * 221.16113 * 19 18 17 21 21 N 1.34781 * 120.00294 * 41.16091 * 19 18 17 22 22 C 1.46924 * 120.62857 * 5.13958 * 21 19 18 23 23 C 1.53622 * 108.54335 * 126.36757 * 22 21 19 24 24 C 1.53043 * 109.23819 * 54.85469 * 23 22 21 25 25 C 1.53039 * 109.54068 * 298.50854 * 24 23 22 26 26 C 1.46926 * 120.62829 * 185.41830 * 21 19 18 27 27 C 1.39315 * 119.85771 * 0.50056 * 18 17 16 28 28 H 1.09001 * 109.46862 * 82.34633 * 1 2 3 29 29 H 1.08998 * 109.47243 * 202.34598 * 1 2 3 30 30 H 1.08993 * 109.46943 * 322.34769 * 1 2 3 31 31 H 1.09003 * 109.46790 * 239.99775 * 2 1 3 32 32 H 1.08999 * 109.46851 * 120.00364 * 2 1 3 33 33 H 0.96999 * 120.00330 * 180.02562 * 7 6 4 34 34 H 1.08003 * 119.93125 * 0.04584 * 15 14 12 35 35 H 1.08001 * 119.84551 * 180.02562 * 16 15 14 36 36 H 1.08003 * 119.92020 * 180.02562 * 17 16 15 37 37 H 1.08998 * 109.58840 * 246.20069 * 22 21 19 38 38 H 1.09004 * 109.58807 * 6.62684 * 22 21 19 39 39 H 1.08997 * 109.63971 * 294.86671 * 23 22 21 40 40 H 1.08995 * 109.43700 * 174.72267 * 23 22 21 41 41 H 1.09004 * 109.45931 * 178.49043 * 24 23 22 42 42 H 1.09001 * 109.46127 * 58.53578 * 24 23 22 43 43 H 1.08997 * 109.49942 * 301.41874 * 25 24 23 44 44 H 1.08999 * 109.49676 * 181.31893 * 25 24 23 45 45 H 1.08999 * 109.59109 * 353.37707 * 26 21 19 46 46 H 1.09005 * 109.58348 * 113.80414 * 26 21 19 47 47 H 1.07992 * 120.15029 * 179.74736 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.0772 2.0863 -1.1717 5 1 1.7714 3.1218 -1.1947 6 6 2.5309 1.4693 -2.3323 7 7 2.3096 2.0257 -3.5015 8 14 3.4552 -0.1506 -2.2289 9 1 2.4943 -1.2770 -2.3440 10 1 4.4435 -0.2282 -3.3345 11 1 4.1626 -0.2346 -0.9258 12 6 2.4096 1.9576 1.1537 13 8 2.8462 3.0925 1.1489 14 6 2.3082 1.2106 2.4243 15 6 3.4006 1.1564 3.2943 16 6 3.3073 0.4584 4.4816 17 6 2.1354 -0.1902 4.8183 18 6 1.0341 -0.1399 3.9606 19 6 -0.2215 -0.8302 4.3257 20 8 -0.8475 -1.4401 3.4809 21 7 -0.6718 -0.7833 5.5952 22 6 0.0112 0.0407 6.6017 23 6 -1.0222 0.9716 7.2540 24 6 -2.1776 0.1339 7.8068 25 6 -2.8607 -0.6155 6.6605 26 6 -1.8514 -1.5600 6.0002 27 6 1.1228 0.5578 2.7580 28 1 -0.3633 0.1369 -1.0185 29 1 -0.3633 -0.9505 0.3907 30 1 -0.3633 0.8136 0.6277 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 2.6257 1.5951 -4.3112 34 1 4.3198 1.6621 3.0374 35 1 4.1543 0.4200 5.1505 36 1 2.0690 -0.7342 5.7489 37 1 0.4569 -0.6032 7.3599 38 1 0.7885 0.6350 6.1212 39 1 -1.4038 1.6726 6.5117 40 1 -0.5511 1.5232 8.0675 41 1 -2.9001 0.7886 8.2941 42 1 -1.7918 -0.5837 8.5309 43 1 -3.2249 0.1004 5.9237 44 1 -3.6979 -1.1935 7.0517 45 1 -2.3035 -2.0223 5.1227 46 1 -1.5545 -2.3318 6.7103 47 1 0.2756 0.5964 2.0895 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120956155.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:55 Heat of formation + Delta-G solvation = -21.353788 kcal Electronic energy + Delta-G solvation = -29131.145829 eV Core-core repulsion = 25279.648088 eV Total energy + Delta-G solvation = -3851.497741 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.73578 -39.44967 -37.78975 -37.27444 -35.28544 -33.34552 -32.43535 -31.77733 -30.94952 -30.55292 -29.72387 -26.01165 -25.49122 -23.87030 -23.23008 -22.82764 -22.68716 -21.12832 -19.95401 -18.91995 -17.33815 -16.88594 -16.68687 -16.19550 -16.06050 -15.58048 -15.45455 -14.88170 -14.83400 -14.49862 -14.13598 -14.01086 -13.92374 -13.56344 -13.49515 -13.20725 -12.99395 -12.68559 -12.60203 -12.31535 -12.25217 -11.97876 -11.75353 -11.67060 -11.53405 -11.26493 -11.03419 -11.00109 -10.90326 -10.86391 -10.72955 -10.11410 -9.92604 -9.83036 -9.13178 -8.96013 -8.80432 -8.73758 -8.54050 -7.77771 -6.41658 -4.04215 0.95696 1.29013 2.62997 2.81352 3.04030 3.20462 3.24818 3.52307 3.98316 4.11927 4.26315 4.38858 4.43755 4.54699 4.63459 4.75824 4.85199 4.91368 4.94853 5.01248 5.15242 5.19787 5.29736 5.40074 5.44306 5.47005 5.49557 5.52378 5.58281 5.61452 5.73010 5.74886 5.83920 5.88480 5.99231 5.99849 6.05343 6.23919 6.32835 6.36546 6.42197 6.48450 6.59087 6.83742 6.90653 7.19082 7.53001 8.04559 8.24535 8.46039 8.89116 9.24617 9.70228 10.69401 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.019059 B = 0.003471 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.739098 B = 8065.026939 C = 8596.135249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.081 3.919 3 N -0.452 5.452 4 C -0.310 4.310 5 H 0.106 0.894 6 C 0.063 3.937 7 N -0.862 5.862 8 Si 0.883 3.117 9 H -0.271 1.271 10 H -0.287 1.287 11 H -0.264 1.264 12 C 0.497 3.503 13 O -0.558 6.558 14 C -0.101 4.101 15 C -0.059 4.059 16 C -0.130 4.130 17 C -0.092 4.092 18 C -0.140 4.140 19 C 0.566 3.434 20 O -0.530 6.530 21 N -0.610 5.610 22 C 0.096 3.904 23 C -0.137 4.137 24 C -0.120 4.120 25 C -0.136 4.136 26 C 0.111 3.889 27 C -0.056 4.056 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.275 0.725 34 H 0.133 0.867 35 H 0.131 0.869 36 H 0.127 0.873 37 H 0.069 0.931 38 H 0.099 0.901 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.068 0.932 44 H 0.074 0.926 45 H 0.094 0.906 46 H 0.066 0.934 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.501 -8.671 23.414 25.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.042 4.042 3 N -0.173 5.173 4 C -0.437 4.437 5 H 0.124 0.876 6 C -0.144 4.144 7 N -0.498 5.498 8 Si 0.711 3.289 9 H -0.198 1.198 10 H -0.214 1.214 11 H -0.189 1.189 12 C 0.285 3.715 13 O -0.440 6.440 14 C -0.105 4.105 15 C -0.078 4.078 16 C -0.148 4.148 17 C -0.111 4.111 18 C -0.143 4.143 19 C 0.355 3.645 20 O -0.407 6.407 21 N -0.344 5.344 22 C -0.027 4.027 23 C -0.175 4.175 24 C -0.157 4.157 25 C -0.174 4.174 26 C -0.011 4.011 27 C -0.076 4.076 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.145 0.855 37 H 0.087 0.913 38 H 0.117 0.883 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.112 0.888 46 H 0.084 0.916 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -5.613 -8.428 22.685 24.842 hybrid contribution 0.479 -0.903 -0.037 1.023 sum -5.135 -9.331 22.649 25.028 Atomic orbital electron populations 1.22197 0.95634 1.01225 1.02765 1.21960 0.95273 0.85533 1.01431 1.43746 1.54855 1.11584 1.07076 1.19049 1.43121 0.98472 0.83102 0.87600 1.25420 0.95624 0.98380 0.94959 1.69663 1.42561 1.39923 0.97660 0.86864 0.80286 0.83211 0.78514 1.19819 1.21405 1.18882 1.18195 0.82060 0.87810 0.83413 1.90672 1.48548 1.18543 1.86220 1.20389 0.94356 0.98827 0.96909 1.21401 0.98154 0.95695 0.92533 1.20984 0.97731 0.98879 0.97202 1.21342 0.92660 0.98723 0.98370 1.19686 0.94424 1.03339 0.96869 1.18434 0.84595 0.79957 0.81537 1.90782 1.58142 1.43333 1.48410 1.47972 1.30037 1.47042 1.09351 1.22212 0.95671 0.93592 0.91182 1.22016 0.96645 0.98148 1.00728 1.21522 0.97641 0.99014 0.97553 1.21920 0.97969 0.99246 0.98239 1.21595 0.85679 0.93330 1.00477 1.21917 0.98375 0.92818 0.94443 0.91658 0.92030 0.92282 0.91711 0.91302 0.91409 0.84918 0.85149 0.85475 0.91265 0.88258 0.91206 0.90596 0.91680 0.91813 0.91332 0.90751 0.88804 0.91567 0.83541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.08 8.91 37.16 0.33 -2.75 16 2 C 0.08 1.74 4.63 -4.04 -0.02 1.73 16 3 N -0.45 -11.30 2.13 -115.92 -0.25 -11.54 16 4 C -0.31 -8.87 9.24 -15.00 -0.14 -9.01 16 5 H 0.11 3.37 8.00 -52.49 -0.42 2.95 16 6 C 0.06 1.76 5.41 -17.45 -0.09 1.66 16 7 N -0.86 -25.06 13.95 55.50 0.77 -24.28 16 8 Si 0.88 21.15 24.90 -169.99 -4.23 16.92 16 9 H -0.27 -6.09 6.65 56.52 0.38 -5.72 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.26 -6.30 7.11 56.52 0.40 -5.90 16 12 C 0.50 12.04 7.17 -12.38 -0.09 11.95 16 13 O -0.56 -15.47 16.96 5.28 0.09 -15.38 16 14 C -0.10 -1.93 4.76 -105.02 -0.50 -2.43 16 15 C -0.06 -0.93 9.72 -39.09 -0.38 -1.31 16 16 C -0.13 -1.55 10.02 -39.70 -0.40 -1.94 16 17 C -0.09 -1.06 7.37 -39.09 -0.29 -1.35 16 18 C -0.14 -2.02 5.10 -105.02 -0.54 -2.56 16 19 C 0.57 8.12 7.31 -12.32 -0.09 8.03 16 20 O -0.53 -9.31 16.35 5.32 0.09 -9.22 16 21 N -0.61 -6.54 2.97 -173.61 -0.51 -7.06 16 22 C 0.10 0.77 4.94 -3.49 -0.02 0.75 16 23 C -0.14 -0.97 6.10 -26.39 -0.16 -1.13 16 24 C -0.12 -0.75 5.88 -26.69 -0.16 -0.91 16 25 C -0.14 -1.00 6.08 -26.61 -0.16 -1.16 16 26 C 0.11 1.01 6.44 -3.71 -0.02 0.99 16 27 C -0.06 -0.97 7.26 -38.76 -0.28 -1.25 16 28 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.06 1.13 6.23 -51.93 -0.32 0.81 16 31 H 0.07 1.45 2.84 -51.93 -0.15 1.31 16 32 H 0.07 1.35 5.71 -51.93 -0.30 1.06 16 33 H 0.28 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.13 2.06 8.06 -52.48 -0.42 1.64 16 35 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.13 1.08 6.63 -52.48 -0.35 0.74 16 37 H 0.07 0.42 8.13 -51.93 -0.42 0.00 16 38 H 0.10 0.86 4.73 -51.93 -0.25 0.62 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.09 1.01 7.00 -51.93 -0.36 0.65 16 46 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.15 2.67 4.17 -52.49 -0.22 2.45 16 LS Contribution 365.60 15.07 5.51 5.51 Total: -1.00 -33.88 365.60 -8.13 -42.01 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -6.60 Total: 3.75 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -3.00 Total: -0.71 kcal Atomic # 7 Polarization: -42.90 SS G_CDS: 0.01 Total: -42.88 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: 0.18 Total: -24.60 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.23 Total: 16.92 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.88 -8.13 -42.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120956155.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.660 kcal (2) G-P(sol) polarization free energy of solvation -33.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds