Wall clock time and date at job start Tue Mar 31 2020 17:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46495 * 109.46971 * 2 1 4 4 C 1.36878 * 120.00113 * 278.70989 * 3 2 1 5 5 H 1.07999 * 119.99881 * 138.25539 * 4 3 2 6 6 C 1.39048 * 119.99780 * 318.25223 * 4 3 2 7 7 N 1.31364 * 120.00071 * 164.53678 * 6 4 3 8 8 Si 1.86796 * 120.00158 * 344.53726 * 6 4 3 9 9 H 1.48497 * 109.47189 * 91.64565 * 8 6 4 10 10 H 1.48501 * 109.47326 * 211.64530 * 8 6 4 11 11 H 1.48505 * 109.47047 * 331.64323 * 8 6 4 12 12 C 1.34774 * 120.00006 * 98.71037 * 3 2 1 13 13 O 1.21595 * 120.00282 * 178.16530 * 12 3 2 14 14 C 1.47741 * 120.00231 * 358.17074 * 12 3 2 15 15 C 1.39761 * 120.08542 * 131.09616 * 14 12 3 16 16 C 1.38039 * 120.14062 * 180.02562 * 15 14 12 17 17 C 1.38106 * 120.30147 * 359.97211 * 16 15 14 18 18 C 1.39682 * 120.16026 * 359.77547 * 17 16 15 19 19 C 1.47861 * 120.07097 * 180.25714 * 18 17 16 20 20 O 1.21552 * 119.99922 * 221.16113 * 19 18 17 21 21 N 1.34781 * 120.00294 * 41.16091 * 19 18 17 22 22 C 1.46924 * 120.62857 * 5.13958 * 21 19 18 23 23 C 1.53622 * 108.54335 * 126.36757 * 22 21 19 24 24 C 1.53043 * 109.23819 * 54.85469 * 23 22 21 25 25 C 1.53039 * 109.54068 * 298.50854 * 24 23 22 26 26 C 1.46926 * 120.62829 * 185.41830 * 21 19 18 27 27 C 1.39315 * 119.85771 * 0.50056 * 18 17 16 28 28 H 1.09001 * 109.46862 * 82.34633 * 1 2 3 29 29 H 1.08998 * 109.47243 * 202.34598 * 1 2 3 30 30 H 1.08993 * 109.46943 * 322.34769 * 1 2 3 31 31 H 1.09003 * 109.46790 * 239.99775 * 2 1 3 32 32 H 1.08999 * 109.46851 * 120.00364 * 2 1 3 33 33 H 0.96999 * 120.00330 * 180.02562 * 7 6 4 34 34 H 1.08003 * 119.93125 * 0.04584 * 15 14 12 35 35 H 1.08001 * 119.84551 * 180.02562 * 16 15 14 36 36 H 1.08003 * 119.92020 * 180.02562 * 17 16 15 37 37 H 1.08998 * 109.58840 * 246.20069 * 22 21 19 38 38 H 1.09004 * 109.58807 * 6.62684 * 22 21 19 39 39 H 1.08997 * 109.63971 * 294.86671 * 23 22 21 40 40 H 1.08995 * 109.43700 * 174.72267 * 23 22 21 41 41 H 1.09004 * 109.45931 * 178.49043 * 24 23 22 42 42 H 1.09001 * 109.46127 * 58.53578 * 24 23 22 43 43 H 1.08997 * 109.49942 * 301.41874 * 25 24 23 44 44 H 1.08999 * 109.49676 * 181.31893 * 25 24 23 45 45 H 1.08999 * 109.59109 * 353.37707 * 26 21 19 46 46 H 1.09005 * 109.58348 * 113.80414 * 26 21 19 47 47 H 1.07992 * 120.15029 * 179.74736 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.0772 2.0863 -1.1717 5 1 1.7714 3.1218 -1.1947 6 6 2.5309 1.4693 -2.3323 7 7 2.3096 2.0257 -3.5015 8 14 3.4552 -0.1506 -2.2289 9 1 2.4943 -1.2770 -2.3440 10 1 4.4435 -0.2282 -3.3345 11 1 4.1626 -0.2346 -0.9258 12 6 2.4096 1.9576 1.1537 13 8 2.8462 3.0925 1.1489 14 6 2.3082 1.2106 2.4243 15 6 3.4006 1.1564 3.2943 16 6 3.3073 0.4584 4.4816 17 6 2.1354 -0.1902 4.8183 18 6 1.0341 -0.1399 3.9606 19 6 -0.2215 -0.8302 4.3257 20 8 -0.8475 -1.4401 3.4809 21 7 -0.6718 -0.7833 5.5952 22 6 0.0112 0.0407 6.6017 23 6 -1.0222 0.9716 7.2540 24 6 -2.1776 0.1339 7.8068 25 6 -2.8607 -0.6155 6.6605 26 6 -1.8514 -1.5600 6.0002 27 6 1.1228 0.5578 2.7580 28 1 -0.3633 0.1369 -1.0185 29 1 -0.3633 -0.9505 0.3907 30 1 -0.3633 0.8136 0.6277 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 2.6257 1.5951 -4.3112 34 1 4.3198 1.6621 3.0374 35 1 4.1543 0.4200 5.1505 36 1 2.0690 -0.7342 5.7489 37 1 0.4569 -0.6032 7.3599 38 1 0.7885 0.6350 6.1212 39 1 -1.4038 1.6726 6.5117 40 1 -0.5511 1.5232 8.0675 41 1 -2.9001 0.7886 8.2941 42 1 -1.7918 -0.5837 8.5309 43 1 -3.2249 0.1004 5.9237 44 1 -3.6979 -1.1935 7.0517 45 1 -2.3035 -2.0223 5.1227 46 1 -1.5545 -2.3318 6.7103 47 1 0.2756 0.5964 2.0895 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120956155.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:54 Heat of formation + Delta-G solvation = -43.379580 kcal Electronic energy + Delta-G solvation = -29132.100939 eV Core-core repulsion = 25279.648088 eV Total energy + Delta-G solvation = -3852.452851 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.84319 -40.94211 -39.05135 -38.26730 -37.24894 -34.55286 -34.11349 -32.61443 -32.30253 -31.54453 -31.40190 -27.45019 -26.79905 -24.75999 -24.69582 -24.31582 -23.67135 -22.08142 -21.17765 -20.02906 -19.00447 -18.56736 -18.02126 -17.73846 -17.23497 -17.03865 -16.49169 -16.13185 -15.88339 -15.58895 -15.34198 -15.32714 -15.07083 -14.67118 -14.62803 -14.42234 -14.29149 -14.23829 -13.98340 -13.77594 -13.54710 -13.28185 -13.14833 -12.86477 -12.76252 -12.74238 -12.25646 -12.18629 -12.07216 -11.83096 -11.68431 -11.60708 -11.48000 -11.14531 -10.97874 -10.57746 -10.07294 -9.89842 -9.82577 -9.63791 -8.57637 -6.27636 -0.20637 0.09009 1.13268 1.23716 1.35926 1.53493 1.87606 1.94658 2.10336 2.51244 2.74027 2.85807 3.36477 3.60479 3.82053 3.85684 3.90420 3.99355 4.01653 4.02589 4.14504 4.19043 4.25532 4.32110 4.37866 4.39789 4.53279 4.62443 4.66482 4.77221 4.83200 4.84928 4.86785 4.92274 4.95338 5.05879 5.13858 5.17418 5.21960 5.25375 5.26533 5.38395 5.46695 5.48786 5.56925 5.77502 5.95221 6.29031 6.45085 6.80306 7.03953 7.14421 7.70340 8.58606 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.019059 B = 0.003471 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.739098 B = 8065.026939 C = 8596.135249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.082 3.918 3 N -0.464 5.464 4 C -0.331 4.331 5 H 0.049 0.951 6 C 0.019 3.981 7 N -0.906 5.906 8 Si 0.947 3.053 9 H -0.241 1.241 10 H -0.280 1.280 11 H -0.262 1.262 12 C 0.495 3.505 13 O -0.608 6.608 14 C -0.132 4.132 15 C -0.065 4.065 16 C -0.107 4.107 17 C -0.061 4.061 18 C -0.142 4.142 19 C 0.559 3.441 20 O -0.574 6.574 21 N -0.601 5.601 22 C 0.089 3.911 23 C -0.137 4.137 24 C -0.116 4.116 25 C -0.133 4.133 26 C 0.107 3.893 27 C -0.066 4.066 28 H 0.052 0.948 29 H 0.087 0.913 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.091 0.909 33 H 0.283 0.717 34 H 0.129 0.871 35 H 0.181 0.819 36 H 0.174 0.826 37 H 0.106 0.894 38 H 0.094 0.906 39 H 0.044 0.956 40 H 0.098 0.902 41 H 0.071 0.929 42 H 0.084 0.916 43 H 0.044 0.956 44 H 0.092 0.908 45 H 0.069 0.931 46 H 0.094 0.906 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.503 -12.133 28.370 31.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.040 4.040 3 N -0.184 5.184 4 C -0.459 4.459 5 H 0.067 0.933 6 C -0.184 4.184 7 N -0.543 5.543 8 Si 0.771 3.229 9 H -0.166 1.166 10 H -0.207 1.207 11 H -0.186 1.186 12 C 0.286 3.714 13 O -0.493 6.493 14 C -0.135 4.135 15 C -0.084 4.084 16 C -0.124 4.124 17 C -0.080 4.080 18 C -0.145 4.145 19 C 0.348 3.652 20 O -0.454 6.454 21 N -0.333 5.333 22 C -0.032 4.032 23 C -0.176 4.176 24 C -0.153 4.153 25 C -0.171 4.171 26 C -0.015 4.015 27 C -0.086 4.086 28 H 0.071 0.929 29 H 0.105 0.895 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.110 0.890 33 H 0.092 0.908 34 H 0.147 0.853 35 H 0.198 0.802 36 H 0.191 0.809 37 H 0.124 0.876 38 H 0.112 0.888 39 H 0.063 0.937 40 H 0.116 0.884 41 H 0.090 0.910 42 H 0.102 0.898 43 H 0.063 0.937 44 H 0.110 0.890 45 H 0.088 0.912 46 H 0.112 0.888 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.646 -11.896 27.693 30.496 hybrid contribution 0.083 0.264 -1.344 1.373 sum -4.562 -11.632 26.348 29.161 Atomic orbital electron populations 1.22107 0.94356 1.02341 1.01990 1.22083 0.96362 0.83488 1.02080 1.43813 1.55630 1.12734 1.06229 1.18641 1.44858 0.96897 0.85523 0.93339 1.26149 0.95774 1.02522 0.93963 1.69771 1.43760 1.42232 0.98548 0.85854 0.79301 0.79194 0.78593 1.16634 1.20672 1.18612 1.19074 0.80051 0.87295 0.84989 1.90613 1.50408 1.20889 1.87417 1.19911 0.96850 1.01249 0.95478 1.21569 0.96966 0.96341 0.93544 1.21434 0.99193 0.96197 0.95601 1.21855 0.90819 0.96607 0.98674 1.19776 0.95790 1.02702 0.96212 1.18482 0.84498 0.79756 0.82431 1.90761 1.59269 1.45468 1.49910 1.48098 1.30114 1.46490 1.08616 1.22509 0.95685 0.93979 0.91073 1.22029 0.96922 0.97859 1.00743 1.21523 0.97395 0.99254 0.97166 1.21908 0.98268 0.98773 0.98151 1.21762 0.85448 0.94071 1.00177 1.21668 0.97121 0.93918 0.95853 0.92873 0.89463 0.93012 0.92271 0.89037 0.90753 0.85286 0.80210 0.80896 0.87603 0.88790 0.93677 0.88380 0.91040 0.89767 0.93745 0.88970 0.91230 0.88772 0.85522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.94 8.91 71.98 0.64 -5.30 16 2 C 0.08 3.56 4.63 86.38 0.40 3.96 16 3 N -0.46 -24.40 2.13 -638.92 -1.36 -25.76 16 4 C -0.33 -20.39 9.24 84.10 0.78 -19.62 16 5 H 0.05 3.44 8.00 -2.91 -0.02 3.42 16 6 C 0.02 1.12 5.41 84.96 0.46 1.57 16 7 N -0.91 -55.34 13.95 21.68 0.30 -55.04 16 8 Si 0.95 44.18 24.90 68.60 1.71 45.89 16 9 H -0.24 -10.06 6.65 99.48 0.66 -9.40 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 12 C 0.50 25.32 7.17 86.76 0.62 25.94 16 13 O -0.61 -36.14 16.96 -4.01 -0.07 -36.21 16 14 C -0.13 -5.04 4.76 -20.12 -0.10 -5.14 16 15 C -0.07 -1.93 9.72 22.59 0.22 -1.71 16 16 C -0.11 -1.98 10.02 22.19 0.22 -1.76 16 17 C -0.06 -1.09 7.37 22.59 0.17 -0.92 16 18 C -0.14 -3.73 5.10 -20.12 -0.10 -3.83 16 19 C 0.56 14.99 7.31 86.79 0.63 15.63 16 20 O -0.57 -19.92 16.35 -3.88 -0.06 -19.98 16 21 N -0.60 -11.03 2.97 -821.45 -2.44 -13.46 16 22 C 0.09 0.99 4.94 86.51 0.43 1.42 16 23 C -0.14 -1.45 6.10 30.82 0.19 -1.26 16 24 C -0.12 -1.00 5.88 30.62 0.18 -0.82 16 25 C -0.13 -1.64 6.08 30.67 0.19 -1.46 16 26 C 0.11 1.66 6.44 86.36 0.56 2.21 16 27 C -0.07 -2.27 7.26 22.80 0.17 -2.11 16 28 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 30 H 0.05 2.11 6.23 -2.39 -0.01 2.09 16 31 H 0.06 2.62 2.84 -2.39 -0.01 2.62 16 32 H 0.09 3.55 5.71 -2.39 -0.01 3.54 16 33 H 0.28 15.75 8.31 -92.71 -0.77 14.98 16 34 H 0.13 3.88 8.06 -2.91 -0.02 3.86 16 35 H 0.18 1.71 8.06 -2.91 -0.02 1.69 16 36 H 0.17 1.59 6.63 -2.91 -0.02 1.57 16 37 H 0.11 0.52 8.13 -2.39 -0.02 0.50 16 38 H 0.09 1.16 4.73 -2.38 -0.01 1.15 16 39 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.07 0.56 8.14 -2.39 -0.02 0.55 16 42 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 43 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.07 1.44 7.00 -2.39 -0.02 1.43 16 46 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 47 H 0.13 4.80 4.17 -2.91 -0.01 4.79 16 Total: -1.00 -83.60 365.60 4.68 -78.92 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: 0.95 Total: 18.83 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: 5.65 Total: 6.82 kcal Atomic # 7 Polarization: -90.77 SS G_CDS: -3.49 Total: -94.26 kcal Atomic # 8 Polarization: -56.06 SS G_CDS: -0.13 Total: -56.20 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.71 Total: 45.89 kcal Total: -83.60 4.68 -78.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120956155.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.539 kcal (2) G-P(sol) polarization free energy of solvation -83.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds