Wall clock time and date at job start Tue Mar 31 2020 17:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46497 * 109.47215 * 2 1 4 4 C 1.36937 * 120.00665 * 275.30345 * 3 2 1 5 5 H 1.07999 * 119.99626 * 36.95503 * 4 3 2 6 6 C 1.38807 * 120.00322 * 216.95182 * 4 3 2 7 7 N 1.31615 * 120.00290 * 9.55928 * 6 4 3 8 8 Si 1.86799 * 119.99921 * 189.56117 * 6 4 3 9 9 H 1.48495 * 109.47330 * 59.99934 * 8 6 4 10 10 H 1.48498 * 109.47242 * 180.02562 * 8 6 4 11 11 H 1.48510 * 109.47026 * 300.00038 * 8 6 4 12 12 C 1.46503 * 119.99535 * 95.30889 * 3 2 1 13 13 H 1.08999 * 109.47272 * 177.76975 * 12 3 2 14 14 C 1.52994 * 109.47565 * 57.76422 * 12 3 2 15 15 C 1.53002 * 109.47134 * 297.76426 * 12 3 2 16 16 N 1.46508 * 109.47064 * 305.00252 * 15 12 3 17 17 C 1.34772 * 119.99649 * 179.97438 * 16 15 12 18 18 O 1.21622 * 120.00529 * 4.86706 * 17 16 15 19 19 C 1.47165 * 119.99446 * 184.86660 * 17 16 15 20 20 C 1.38401 * 126.88753 * 5.45077 * 19 17 16 21 21 C 1.39676 * 105.36093 * 179.77401 * 20 19 17 22 22 N 1.30857 * 107.86091 * 0.22558 * 21 20 19 23 23 N 1.28442 * 110.93219 * 359.97438 * 22 21 20 24 24 C 1.46497 * 125.19475 * 179.97438 * 23 22 21 25 25 C 1.52997 * 109.47109 * 85.96688 * 24 23 22 26 26 F 1.39894 * 109.47430 * 175.00344 * 25 24 23 27 27 F 1.39901 * 109.46754 * 295.00088 * 25 24 23 28 28 H 1.09001 * 109.47334 * 299.99749 * 1 2 3 29 29 H 1.09004 * 109.47321 * 59.99736 * 1 2 3 30 30 H 1.09000 * 109.47400 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.47387 * 240.00633 * 2 1 3 32 32 H 1.08996 * 109.47463 * 120.00907 * 2 1 3 33 33 H 0.97001 * 120.00738 * 179.97438 * 7 6 4 34 34 H 1.09000 * 109.47503 * 180.02562 * 14 12 3 35 35 H 1.09004 * 109.47361 * 300.00087 * 14 12 3 36 36 H 1.09003 * 109.47065 * 60.00094 * 14 12 3 37 37 H 1.08998 * 109.47289 * 185.00207 * 15 12 3 38 38 H 1.09002 * 109.46778 * 64.99732 * 15 12 3 39 39 H 0.96997 * 119.99583 * 0.02562 * 16 15 12 40 40 H 1.07997 * 127.31946 * 0.03412 * 20 19 17 41 41 H 1.08001 * 126.06591 * 180.24588 * 21 20 19 42 42 H 1.09004 * 109.47206 * 205.96136 * 24 23 22 43 43 H 1.09005 * 109.47215 * 325.96419 * 24 23 22 44 44 H 1.09004 * 109.47238 * 54.99625 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1432 2.0634 -1.1807 5 1 1.4163 1.9203 -1.9665 6 6 3.2041 2.9388 -1.3677 7 7 4.1889 2.9752 -0.4953 8 14 3.2340 4.0652 -2.8575 9 1 2.0402 4.9480 -2.8347 10 1 4.4649 4.8955 -2.8257 11 1 3.2212 3.2472 -4.0969 12 6 2.3731 2.0326 1.2634 13 1 2.7503 3.0351 1.0619 14 6 3.4534 1.2143 1.9733 15 6 1.1336 2.1239 2.1558 16 7 0.0582 2.8041 1.4297 17 6 -1.1366 2.9988 2.0222 18 8 -1.2948 2.6903 3.1879 19 6 -2.2497 3.5848 1.2584 20 6 -2.2616 3.8887 -0.0917 21 6 -3.5317 4.4136 -0.3416 22 7 -4.1949 4.4138 0.7864 23 7 -3.4776 3.9398 1.7406 24 6 -3.9113 3.7979 3.1327 25 6 -4.6435 2.4657 3.3055 26 9 -4.9574 2.2777 4.6557 27 9 -5.8212 2.4796 2.5505 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 4.9304 3.5867 -0.6260 34 1 3.7171 1.6987 2.9135 35 1 3.0762 0.2117 2.1750 36 1 4.3365 1.1492 1.3376 37 1 1.3757 2.6866 3.0574 38 1 0.8087 1.1203 2.4301 39 1 0.2058 3.1135 0.5223 40 1 -1.4608 3.7461 -0.8021 41 1 -3.9008 4.7578 -1.2964 42 1 -3.0410 3.8218 3.7886 43 1 -4.5825 4.6175 3.3895 44 1 -4.0031 1.6522 2.9646 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153362799.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:35 Heat of formation + Delta-G solvation = -40.262353 kcal Electronic energy + Delta-G solvation = -29869.888345 eV Core-core repulsion = 25495.633889 eV Total energy + Delta-G solvation = -4374.254457 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.161 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -49.20724 -47.20464 -42.57548 -39.19857 -36.99201 -34.48544 -33.62311 -31.98686 -31.54201 -30.47566 -29.07870 -28.24686 -25.86279 -24.05858 -23.99093 -22.74987 -21.86589 -21.30278 -19.90801 -19.33895 -18.22675 -17.69818 -17.48962 -16.96802 -16.75948 -15.92312 -15.51354 -15.24199 -14.87914 -14.69088 -14.27788 -14.13885 -14.01964 -13.71061 -13.58200 -13.55020 -13.33821 -12.97943 -12.74740 -12.48376 -12.33982 -12.21970 -11.89893 -11.60238 -11.46399 -11.10169 -11.02838 -10.88970 -10.86787 -10.76626 -10.37922 -10.16227 -9.84365 -9.71486 -9.54180 -9.33386 -9.11829 -8.61890 -8.55473 -6.68216 -5.94814 -3.51287 1.22302 2.09063 2.56732 3.27035 3.29481 3.33762 3.35541 3.43195 3.55640 3.95937 4.08107 4.34691 4.50282 4.69807 4.79963 5.04583 5.07022 5.22337 5.27485 5.30954 5.58648 5.78688 5.81137 5.98036 6.08054 6.16029 6.29396 6.38779 6.43312 6.46349 6.52437 6.55545 6.60479 6.76204 6.84235 6.86001 7.08591 7.40472 7.51547 7.68056 7.82863 7.99772 8.37972 8.42217 9.09927 9.68645 10.27271 11.10957 Molecular weight = 330.16amu Principal moments of inertia in cm(-1) A = 0.015033 B = 0.003854 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.115606 B = 7263.765670 C = 8205.607784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.139 3.861 3 N -0.582 5.582 4 C -0.266 4.266 5 H 0.063 0.937 6 C 0.016 3.984 7 N -0.893 5.893 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.291 1.291 11 H -0.282 1.282 12 C 0.173 3.827 13 H 0.107 0.893 14 C -0.142 4.142 15 C 0.101 3.899 16 N -0.676 5.676 17 C 0.579 3.421 18 O -0.564 6.564 19 C -0.031 4.031 20 C -0.175 4.175 21 C 0.004 3.996 22 N -0.274 5.274 23 N -0.270 5.270 24 C 0.076 3.924 25 C 0.258 3.742 26 F -0.193 7.193 27 F -0.196 7.196 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.033 0.967 31 H 0.042 0.958 32 H 0.037 0.963 33 H 0.256 0.744 34 H 0.034 0.966 35 H 0.030 0.970 36 H 0.076 0.924 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.416 0.584 40 H 0.169 0.831 41 H 0.189 0.811 42 H 0.147 0.853 43 H 0.119 0.881 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.406 0.784 4.663 12.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.013 3.987 3 N -0.304 5.304 4 C -0.396 4.396 5 H 0.081 0.919 6 C -0.185 4.185 7 N -0.535 5.535 8 Si 0.729 3.271 9 H -0.208 1.208 10 H -0.217 1.217 11 H -0.208 1.208 12 C 0.066 3.934 13 H 0.125 0.875 14 C -0.202 4.202 15 C -0.024 4.024 16 N -0.326 5.326 17 C 0.363 3.637 18 O -0.446 6.446 19 C -0.158 4.158 20 C -0.204 4.204 21 C -0.173 4.173 22 N -0.105 5.105 23 N -0.058 5.058 24 C -0.047 4.047 25 C 0.203 3.797 26 F -0.174 7.174 27 F -0.178 7.178 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.053 0.947 35 H 0.049 0.951 36 H 0.095 0.905 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.254 0.746 40 H 0.186 0.814 41 H 0.206 0.794 42 H 0.165 0.835 43 H 0.137 0.863 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -12.399 0.905 6.090 13.843 hybrid contribution 0.773 0.493 -1.597 1.841 sum -11.626 1.399 4.493 12.542 Atomic orbital electron populations 1.22431 1.00085 0.99005 1.01328 1.20786 0.91551 0.87551 0.98841 1.43836 1.76238 1.08151 1.02140 1.19034 1.05611 1.21146 0.93791 0.91944 1.25294 0.94739 1.01039 0.97409 1.69902 1.09155 1.38274 1.36173 0.86443 0.77094 0.80566 0.83010 1.20760 1.21677 1.20823 1.20579 0.88679 0.99918 0.84272 0.87542 1.21986 1.01098 0.97984 0.99089 1.22344 0.88852 0.95688 0.95529 1.45724 1.10685 1.56820 1.19359 1.16944 0.82164 0.78859 0.85724 1.90724 1.83482 1.54138 1.16210 1.21663 0.89568 1.09688 0.94881 1.22483 0.99860 1.04062 0.93964 1.23648 0.92690 1.04188 0.96820 1.73248 1.23143 1.17314 0.96793 1.45179 1.08454 1.44340 1.07790 1.23039 1.04142 0.98198 0.79294 1.22047 0.83522 1.00101 0.74053 1.93008 1.93922 1.96273 1.34200 1.93037 1.51165 1.97704 1.75853 0.93387 0.93341 0.94835 0.93996 0.94473 0.93359 0.94717 0.95088 0.90504 0.92486 0.92511 0.74585 0.81365 0.79424 0.83528 0.86326 0.86520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.84 9.91 37.15 0.37 -2.47 16 2 C 0.14 2.62 5.75 -4.05 -0.02 2.60 16 3 N -0.58 -12.14 1.87 -165.67 -0.31 -12.45 16 4 C -0.27 -6.16 9.12 -15.06 -0.14 -6.29 16 5 H 0.06 1.45 7.85 -52.49 -0.41 1.03 16 6 C 0.02 0.38 5.03 -17.43 -0.09 0.29 16 7 N -0.89 -22.48 10.53 55.49 0.58 -21.90 16 8 Si 0.90 19.35 29.56 -169.99 -5.03 14.32 16 9 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 10 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 12 C 0.17 3.43 1.92 -67.93 -0.13 3.30 16 13 H 0.11 2.43 5.95 -51.93 -0.31 2.12 16 14 C -0.14 -2.71 9.03 37.15 0.34 -2.37 16 15 C 0.10 1.77 4.35 -4.04 -0.02 1.75 16 16 N -0.68 -11.23 4.19 -61.46 -0.26 -11.49 16 17 C 0.58 9.34 7.69 -12.64 -0.10 9.24 16 18 O -0.56 -9.84 14.69 5.26 0.08 -9.77 16 19 C -0.03 -0.46 6.96 -82.05 -0.57 -1.03 16 20 C -0.18 -2.33 10.50 -38.98 -0.41 -2.74 16 21 C 0.00 0.05 12.03 -17.43 -0.21 -0.16 16 22 N -0.27 -3.83 11.90 30.59 0.36 -3.47 16 23 N -0.27 -3.71 3.33 -57.14 -0.19 -3.90 16 24 C 0.08 0.88 6.04 -4.04 -0.02 0.85 16 25 C 0.26 3.03 5.55 37.16 0.21 3.24 16 26 F -0.19 -2.31 17.34 2.25 0.04 -2.27 16 27 F -0.20 -2.62 17.32 2.25 0.04 -2.58 16 28 H 0.05 0.82 5.19 -51.93 -0.27 0.55 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.04 0.83 8.08 -51.92 -0.42 0.41 16 32 H 0.04 0.68 6.32 -51.93 -0.33 0.35 16 33 H 0.26 6.42 8.31 -40.82 -0.34 6.08 16 34 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.03 0.54 6.58 -51.93 -0.34 0.20 16 36 H 0.08 1.68 7.57 -51.93 -0.39 1.29 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.06 1.01 6.95 -51.93 -0.36 0.65 16 39 H 0.42 7.13 6.85 -40.82 -0.28 6.85 16 40 H 0.17 2.09 7.62 -52.49 -0.40 1.69 16 41 H 0.19 1.70 8.06 -52.49 -0.42 1.28 16 42 H 0.15 1.73 6.22 -51.93 -0.32 1.40 16 43 H 0.12 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.12 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 366.33 15.07 5.52 5.52 Total: -1.00 -26.44 366.33 -5.89 -32.32 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -5.93 Total: 9.44 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: -0.80 Total: 6.21 kcal Atomic # 7 Polarization: -53.39 SS G_CDS: 0.19 Total: -53.20 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.08 Total: -9.77 kcal Atomic # 9 Polarization: -4.93 SS G_CDS: 0.08 Total: -4.85 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.03 Total: 14.32 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -26.44 -5.89 -32.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153362799.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.938 kcal (2) G-P(sol) polarization free energy of solvation -26.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds