Wall clock time and date at job start Tue Mar 31 2020 17:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46497 * 109.47215 * 2 1 4 4 C 1.36937 * 120.00665 * 275.30345 * 3 2 1 5 5 H 1.07999 * 119.99626 * 36.95503 * 4 3 2 6 6 C 1.38807 * 120.00322 * 216.95182 * 4 3 2 7 7 N 1.31615 * 120.00290 * 9.55928 * 6 4 3 8 8 Si 1.86799 * 119.99921 * 189.56117 * 6 4 3 9 9 H 1.48495 * 109.47330 * 59.99934 * 8 6 4 10 10 H 1.48498 * 109.47242 * 180.02562 * 8 6 4 11 11 H 1.48510 * 109.47026 * 300.00038 * 8 6 4 12 12 C 1.46503 * 119.99535 * 95.30889 * 3 2 1 13 13 H 1.08999 * 109.47272 * 177.76975 * 12 3 2 14 14 C 1.52994 * 109.47565 * 57.76422 * 12 3 2 15 15 C 1.53002 * 109.47134 * 297.76426 * 12 3 2 16 16 N 1.46508 * 109.47064 * 305.00252 * 15 12 3 17 17 C 1.34772 * 119.99649 * 179.97438 * 16 15 12 18 18 O 1.21622 * 120.00529 * 4.86706 * 17 16 15 19 19 C 1.47165 * 119.99446 * 184.86660 * 17 16 15 20 20 C 1.38401 * 126.88753 * 5.45077 * 19 17 16 21 21 C 1.39676 * 105.36093 * 179.77401 * 20 19 17 22 22 N 1.30857 * 107.86091 * 0.22558 * 21 20 19 23 23 N 1.28442 * 110.93219 * 359.97438 * 22 21 20 24 24 C 1.46497 * 125.19475 * 179.97438 * 23 22 21 25 25 C 1.52997 * 109.47109 * 85.96688 * 24 23 22 26 26 F 1.39894 * 109.47430 * 175.00344 * 25 24 23 27 27 F 1.39901 * 109.46754 * 295.00088 * 25 24 23 28 28 H 1.09001 * 109.47334 * 299.99749 * 1 2 3 29 29 H 1.09004 * 109.47321 * 59.99736 * 1 2 3 30 30 H 1.09000 * 109.47400 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.47387 * 240.00633 * 2 1 3 32 32 H 1.08996 * 109.47463 * 120.00907 * 2 1 3 33 33 H 0.97001 * 120.00738 * 179.97438 * 7 6 4 34 34 H 1.09000 * 109.47503 * 180.02562 * 14 12 3 35 35 H 1.09004 * 109.47361 * 300.00087 * 14 12 3 36 36 H 1.09003 * 109.47065 * 60.00094 * 14 12 3 37 37 H 1.08998 * 109.47289 * 185.00207 * 15 12 3 38 38 H 1.09002 * 109.46778 * 64.99732 * 15 12 3 39 39 H 0.96997 * 119.99583 * 0.02562 * 16 15 12 40 40 H 1.07997 * 127.31946 * 0.03412 * 20 19 17 41 41 H 1.08001 * 126.06591 * 180.24588 * 21 20 19 42 42 H 1.09004 * 109.47206 * 205.96136 * 24 23 22 43 43 H 1.09005 * 109.47215 * 325.96419 * 24 23 22 44 44 H 1.09004 * 109.47238 * 54.99625 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1432 2.0634 -1.1807 5 1 1.4163 1.9203 -1.9665 6 6 3.2041 2.9388 -1.3677 7 7 4.1889 2.9752 -0.4953 8 14 3.2340 4.0652 -2.8575 9 1 2.0402 4.9480 -2.8347 10 1 4.4649 4.8955 -2.8257 11 1 3.2212 3.2472 -4.0969 12 6 2.3731 2.0326 1.2634 13 1 2.7503 3.0351 1.0619 14 6 3.4534 1.2143 1.9733 15 6 1.1336 2.1239 2.1558 16 7 0.0582 2.8041 1.4297 17 6 -1.1366 2.9988 2.0222 18 8 -1.2948 2.6903 3.1879 19 6 -2.2497 3.5848 1.2584 20 6 -2.2616 3.8887 -0.0917 21 6 -3.5317 4.4136 -0.3416 22 7 -4.1949 4.4138 0.7864 23 7 -3.4776 3.9398 1.7406 24 6 -3.9113 3.7979 3.1327 25 6 -4.6435 2.4657 3.3055 26 9 -4.9574 2.2777 4.6557 27 9 -5.8212 2.4796 2.5505 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 4.9304 3.5867 -0.6260 34 1 3.7171 1.6987 2.9135 35 1 3.0762 0.2117 2.1750 36 1 4.3365 1.1492 1.3376 37 1 1.3757 2.6866 3.0574 38 1 0.8087 1.1203 2.4301 39 1 0.2058 3.1135 0.5223 40 1 -1.4608 3.7461 -0.8021 41 1 -3.9008 4.7578 -1.2964 42 1 -3.0410 3.8218 3.7886 43 1 -4.5825 4.6175 3.3895 44 1 -4.0031 1.6522 2.9646 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153362799.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:34 Heat of formation + Delta-G solvation = -53.837215 kcal Electronic energy + Delta-G solvation = -29870.476996 eV Core-core repulsion = 25495.633889 eV Total energy + Delta-G solvation = -4374.843107 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.161 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -50.17649 -48.18047 -43.60982 -40.52197 -38.53402 -35.65486 -34.86156 -33.69957 -32.92380 -31.71500 -30.05044 -29.87459 -27.24804 -25.73366 -25.02613 -23.93113 -23.29563 -22.41058 -21.13689 -20.82081 -19.43073 -18.74120 -18.56669 -18.40914 -17.82664 -17.14924 -16.87504 -16.58342 -16.29722 -16.00981 -15.56407 -15.40580 -15.19524 -14.98272 -14.70343 -14.53062 -14.49992 -14.25410 -14.02651 -13.92495 -13.72628 -13.48193 -13.29201 -13.14322 -12.72161 -12.68967 -12.49762 -12.41066 -12.35313 -12.04014 -11.90506 -11.82991 -11.29953 -11.15161 -11.13944 -10.41646 -10.38052 -10.17023 -9.89014 -8.40738 -7.76011 -5.33195 0.10671 1.09279 1.55839 1.56299 1.59301 1.62573 2.12551 2.22040 2.56297 2.58836 3.02850 3.17862 3.40427 3.54905 3.59957 3.72916 3.73652 4.07851 4.17330 4.28002 4.31990 4.50514 4.56534 4.62126 4.72570 4.84439 4.85000 4.92757 4.97458 5.01875 5.11633 5.27827 5.37597 5.40906 5.45965 5.58815 5.62260 5.78543 5.80408 5.92110 6.52839 6.60210 6.93291 7.10971 7.31711 7.97491 8.50873 9.26700 Molecular weight = 330.16amu Principal moments of inertia in cm(-1) A = 0.015033 B = 0.003854 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.115606 B = 7263.765670 C = 8205.607784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.138 3.862 3 N -0.590 5.590 4 C -0.259 4.259 5 H 0.063 0.937 6 C -0.027 4.027 7 N -0.916 5.916 8 Si 0.950 3.050 9 H -0.271 1.271 10 H -0.305 1.305 11 H -0.285 1.285 12 C 0.178 3.822 13 H 0.077 0.923 14 C -0.134 4.134 15 C 0.115 3.885 16 N -0.678 5.678 17 C 0.583 3.417 18 O -0.579 6.579 19 C -0.049 4.049 20 C -0.173 4.173 21 C 0.008 3.992 22 N -0.287 5.287 23 N -0.272 5.272 24 C 0.075 3.925 25 C 0.263 3.737 26 F -0.194 7.194 27 F -0.205 7.205 28 H 0.044 0.956 29 H 0.042 0.958 30 H 0.052 0.948 31 H 0.030 0.970 32 H 0.044 0.956 33 H 0.247 0.753 34 H 0.050 0.950 35 H 0.043 0.957 36 H 0.044 0.956 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.414 0.586 40 H 0.176 0.824 41 H 0.221 0.779 42 H 0.145 0.855 43 H 0.137 0.863 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.952 0.804 4.418 13.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.012 3.988 3 N -0.312 5.312 4 C -0.390 4.390 5 H 0.081 0.919 6 C -0.225 4.225 7 N -0.560 5.560 8 Si 0.780 3.220 9 H -0.196 1.196 10 H -0.232 1.232 11 H -0.212 1.212 12 C 0.071 3.929 13 H 0.095 0.905 14 C -0.193 4.193 15 C -0.010 4.010 16 N -0.327 5.327 17 C 0.368 3.632 18 O -0.461 6.461 19 C -0.176 4.176 20 C -0.201 4.201 21 C -0.169 4.169 22 N -0.118 5.118 23 N -0.060 5.060 24 C -0.047 4.047 25 C 0.208 3.792 26 F -0.175 7.175 27 F -0.186 7.186 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.252 0.748 40 H 0.193 0.807 41 H 0.237 0.763 42 H 0.162 0.838 43 H 0.155 0.845 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -13.977 0.914 5.851 15.180 hybrid contribution 1.224 0.447 -1.520 2.002 sum -12.753 1.361 4.331 13.537 Atomic orbital electron populations 1.22243 0.98110 1.00144 1.00858 1.20848 0.92924 0.86357 0.98625 1.43952 1.76383 1.08980 1.01926 1.19208 1.04928 1.20519 0.94329 0.91919 1.25804 0.94834 1.02586 0.99259 1.70050 1.09578 1.38919 1.37479 0.85628 0.76633 0.79127 0.80623 1.19614 1.23155 1.21157 1.20417 0.89762 0.98337 0.84386 0.90533 1.21856 0.99579 0.98841 0.99026 1.22051 0.88061 0.95953 0.94947 1.45642 1.10798 1.57061 1.19159 1.17055 0.82192 0.78373 0.85535 1.90714 1.83725 1.54762 1.16882 1.21521 0.89690 1.10942 0.95401 1.22673 1.00492 1.03444 0.93536 1.24204 0.92017 1.03080 0.97578 1.73260 1.23546 1.17636 0.97345 1.45316 1.08109 1.44231 1.08350 1.23123 1.04355 0.98725 0.78495 1.22017 0.83061 1.00316 0.73800 1.93005 1.93916 1.96296 1.34293 1.93019 1.51732 1.97749 1.76116 0.93652 0.93900 0.92884 0.95168 0.93736 0.94316 0.93116 0.93778 0.93659 0.92180 0.92348 0.74847 0.80687 0.76265 0.83764 0.84504 0.86465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.86 9.91 71.98 0.71 -4.15 16 2 C 0.14 5.04 5.75 86.38 0.50 5.53 16 3 N -0.59 -24.28 1.87 -678.06 -1.27 -25.55 16 4 C -0.26 -11.88 9.12 84.03 0.77 -11.11 16 5 H 0.06 2.84 7.85 -2.91 -0.02 2.82 16 6 C -0.03 -1.31 5.03 84.86 0.43 -0.88 16 7 N -0.92 -46.90 10.53 21.65 0.23 -46.67 16 8 Si 0.95 39.73 29.56 68.60 2.03 41.76 16 9 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 10 H -0.30 -13.35 7.11 99.48 0.71 -12.64 16 11 H -0.29 -11.97 7.11 99.48 0.71 -11.26 16 12 C 0.18 7.01 1.92 44.99 0.09 7.10 16 13 H 0.08 3.54 5.95 -2.39 -0.01 3.52 16 14 C -0.13 -5.04 9.03 71.98 0.65 -4.39 16 15 C 0.12 3.91 4.35 86.38 0.38 4.29 16 16 N -0.68 -21.79 4.19 -466.62 -1.96 -23.74 16 17 C 0.58 18.10 7.69 86.59 0.67 18.77 16 18 O -0.58 -19.49 14.69 -4.10 -0.06 -19.55 16 19 C -0.05 -1.36 6.96 40.78 0.28 -1.07 16 20 C -0.17 -4.26 10.50 22.66 0.24 -4.02 16 21 C 0.01 0.18 12.03 85.19 1.02 1.21 16 22 N -0.29 -7.40 11.90 -57.14 -0.68 -8.08 16 23 N -0.27 -7.02 3.33 -334.68 -1.12 -8.14 16 24 C 0.07 1.63 6.04 86.38 0.52 2.15 16 25 C 0.26 5.85 5.55 71.98 0.40 6.25 16 26 F -0.19 -4.41 17.34 44.97 0.78 -3.63 16 27 F -0.20 -5.18 17.32 44.97 0.78 -4.40 16 28 H 0.04 1.45 5.19 -2.39 -0.01 1.44 16 29 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 30 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.03 1.16 8.08 -2.38 -0.02 1.14 16 32 H 0.04 1.55 6.32 -2.39 -0.02 1.54 16 33 H 0.25 12.70 8.31 -92.71 -0.77 11.93 16 34 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.04 1.51 6.58 -2.38 -0.02 1.49 16 36 H 0.04 1.99 7.57 -2.39 -0.02 1.97 16 37 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.06 1.98 6.95 -2.39 -0.02 1.96 16 39 H 0.41 13.80 6.85 -92.71 -0.63 13.17 16 40 H 0.18 4.01 7.62 -2.91 -0.02 3.99 16 41 H 0.22 3.20 8.06 -2.91 -0.02 3.18 16 42 H 0.14 3.23 6.22 -2.39 -0.01 3.22 16 43 H 0.14 2.42 8.14 -2.38 -0.02 2.40 16 44 H 0.12 2.61 8.14 -2.39 -0.02 2.59 16 Total: -1.00 -55.21 366.33 5.79 -49.42 By element: Atomic # 1 Polarization: 28.51 SS G_CDS: 0.40 Total: 28.92 kcal Atomic # 6 Polarization: 13.02 SS G_CDS: 6.65 Total: 19.67 kcal Atomic # 7 Polarization: -107.39 SS G_CDS: -4.79 Total: -112.18 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.06 Total: -19.55 kcal Atomic # 9 Polarization: -9.59 SS G_CDS: 1.56 Total: -8.03 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 2.03 Total: 41.76 kcal Total: -55.21 5.79 -49.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153362799.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.421 kcal (2) G-P(sol) polarization free energy of solvation -55.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds