Wall clock time and date at job start Tue Mar 31 2020 17:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46507 * 109.46878 * 2 1 4 4 C 1.36932 * 119.99944 * 274.57259 * 3 2 1 5 5 H 1.08001 * 120.00256 * 140.38413 * 4 3 2 6 6 C 1.38818 * 120.00152 * 320.39199 * 4 3 2 7 7 N 1.31621 * 119.99666 * 156.48813 * 6 4 3 8 8 Si 1.86800 * 119.99763 * 336.48291 * 6 4 3 9 9 H 1.48495 * 109.46684 * 95.30681 * 8 6 4 10 10 H 1.48502 * 109.46700 * 215.30566 * 8 6 4 11 11 H 1.48495 * 109.47377 * 335.30657 * 8 6 4 12 12 C 1.46497 * 119.99879 * 94.57804 * 3 2 1 13 13 H 1.08998 * 109.46870 * 180.02562 * 12 3 2 14 14 C 1.53002 * 109.47169 * 59.99799 * 12 3 2 15 15 C 1.53004 * 109.47085 * 299.99619 * 12 3 2 16 16 N 1.46499 * 109.47138 * 305.00687 * 15 12 3 17 17 C 1.34773 * 119.99927 * 180.02562 * 16 15 12 18 18 O 1.21652 * 120.00331 * 359.97438 * 17 16 15 19 19 C 1.47078 * 119.99962 * 179.97438 * 17 16 15 20 20 C 1.36048 * 127.14386 * 359.67924 * 19 17 16 21 21 O 1.33807 * 109.86500 * 179.88590 * 20 19 17 22 22 C 1.34908 * 111.34797 * 0.40141 * 21 20 19 23 23 C 1.40269 * 107.62121 * 359.76009 * 22 21 20 24 24 C 1.39075 * 120.28608 * 180.02562 * 23 22 21 25 25 C 1.37888 * 119.62662 * 359.97438 * 24 23 22 26 26 C 1.38644 * 120.20270 * 0.02562 * 25 24 23 27 27 C 1.37883 * 120.65224 * 0.02562 * 26 25 24 28 28 C 1.50702 * 120.01226 * 179.97438 * 27 26 25 29 29 H 1.08999 * 109.47066 * 299.99684 * 1 2 3 30 30 H 1.08997 * 109.46951 * 60.00217 * 1 2 3 31 31 H 1.09000 * 109.46509 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47543 * 240.00273 * 2 1 3 33 33 H 1.09000 * 109.47439 * 119.99845 * 2 1 3 34 34 H 0.97006 * 119.99373 * 179.97438 * 7 6 4 35 35 H 1.09000 * 109.47008 * 299.99706 * 14 12 3 36 36 H 1.08990 * 109.47188 * 60.00264 * 14 12 3 37 37 H 1.09003 * 109.46818 * 179.97438 * 14 12 3 38 38 H 1.09003 * 109.47058 * 65.00153 * 15 12 3 39 39 H 1.09000 * 109.46949 * 185.00165 * 15 12 3 40 40 H 0.97000 * 119.99786 * 359.97438 * 16 15 12 41 41 H 1.08009 * 125.06561 * 359.97438 * 20 19 17 42 42 H 1.07996 * 120.18952 * 179.97438 * 24 23 22 43 43 H 1.08001 * 119.90022 * 180.02562 * 25 24 23 44 44 H 1.07997 * 119.67217 * 179.97438 * 26 25 24 45 45 H 1.09008 * 109.46632 * 270.01612 * 28 27 26 46 46 H 1.08997 * 109.47257 * 30.01065 * 28 27 26 47 47 H 1.09000 * 109.47541 * 150.01945 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1573 2.0583 -1.1821 5 1 1.8867 3.1022 -1.2417 6 6 2.6460 1.4029 -2.3040 7 7 2.3639 1.8575 -3.5066 8 14 3.7040 -0.1239 -2.1069 9 1 2.8510 -1.3345 -2.2161 10 1 4.7389 -0.1498 -3.1716 11 1 4.3630 -0.1012 -0.7764 12 6 2.3579 2.0381 1.2647 13 1 2.6996 3.0539 1.0661 14 6 3.4691 1.2532 1.9647 15 6 1.1210 2.0834 2.1641 16 7 0.0193 2.7303 1.4471 17 6 -1.1778 2.8827 2.0472 18 8 -1.3437 2.4827 3.1841 19 6 -2.2837 3.5327 1.3277 20 6 -2.2581 4.0361 0.0640 21 8 -3.4553 4.5470 -0.2462 22 6 -4.3234 4.4213 0.7788 23 6 -3.6504 3.7800 1.8291 24 6 -4.3079 3.5158 3.0258 25 6 -5.6270 3.8885 3.1755 26 6 -6.2946 4.5225 2.1389 27 6 -5.6527 4.7883 0.9479 28 6 -6.3923 5.4777 -0.1696 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.7057 1.3997 -4.2906 35 1 3.1268 0.2376 2.1633 36 1 4.3502 1.2210 1.3241 37 1 3.7221 1.7422 2.9055 38 1 0.8315 1.0681 2.4351 39 1 1.3490 2.6496 3.0672 40 1 0.1517 3.0496 0.5408 41 1 -1.3999 4.0238 -0.5916 42 1 -3.7883 3.0216 3.8334 43 1 -6.1417 3.6859 4.1031 44 1 -7.3278 4.8103 2.2653 45 1 -6.8702 4.7309 -0.8038 46 1 -7.1517 6.1375 0.2501 47 1 -5.6902 6.0630 -0.7633 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153850930.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:14 Heat of formation + Delta-G solvation = 10.744201 kcal Electronic energy + Delta-G solvation = -28780.833141 eV Core-core repulsion = 24930.727273 eV Total energy + Delta-G solvation = -3850.105868 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.60282 -39.22716 -38.16526 -37.17905 -33.95732 -33.64064 -32.26237 -31.53341 -31.14094 -29.62630 -28.67372 -27.00167 -26.06639 -23.78560 -23.37690 -22.49570 -22.39646 -21.83524 -19.67670 -19.11549 -17.77574 -17.16546 -16.96375 -16.33390 -15.89617 -15.75816 -15.62923 -15.34536 -14.68948 -14.36697 -14.29447 -13.77096 -13.60536 -13.32191 -13.13085 -12.84715 -12.84288 -12.70994 -12.51441 -12.42763 -12.24518 -11.97523 -11.84395 -11.78549 -11.40269 -11.27331 -11.07194 -11.03249 -10.77554 -10.43293 -10.04104 -9.98611 -9.78686 -9.73312 -9.54855 -8.70332 -8.64841 -8.56554 -8.15520 -6.92717 -6.12536 -3.55450 0.73806 1.23946 1.78577 2.62818 3.26975 3.39575 3.42011 3.46744 3.51380 3.76368 4.39781 4.44699 4.55363 4.71963 4.74443 4.85612 5.10238 5.19315 5.27087 5.32353 5.35426 5.38798 5.43120 5.43858 5.65561 5.76597 5.81775 5.92013 5.95835 6.02198 6.14035 6.16443 6.21244 6.21783 6.29679 6.31539 6.36858 6.39824 6.53599 6.57956 6.65283 6.72906 6.84775 6.91053 7.01449 7.10652 7.93602 7.95732 8.23081 8.55469 8.88000 9.59646 10.02830 11.02216 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.017212 B = 0.003338 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.353287 B = 8386.820273 C = 9404.978561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.134 3.866 3 N -0.599 5.599 4 C -0.277 4.277 5 H 0.077 0.923 6 C 0.045 3.955 7 N -0.894 5.894 8 Si 0.877 3.123 9 H -0.287 1.287 10 H -0.303 1.303 11 H -0.267 1.267 12 C 0.155 3.845 13 H 0.078 0.922 14 C -0.162 4.162 15 C 0.110 3.890 16 N -0.701 5.701 17 C 0.584 3.416 18 O -0.551 6.551 19 C -0.228 4.228 20 C 0.075 3.925 21 O -0.181 6.181 22 C 0.043 3.957 23 C -0.085 4.085 24 C -0.067 4.067 25 C -0.132 4.132 26 C -0.102 4.102 27 C -0.072 4.072 28 C -0.112 4.112 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.033 0.967 32 H 0.047 0.953 33 H 0.039 0.961 34 H 0.264 0.736 35 H 0.049 0.951 36 H 0.060 0.940 37 H 0.047 0.953 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.409 0.591 41 H 0.222 0.778 42 H 0.136 0.864 43 H 0.129 0.871 44 H 0.133 0.867 45 H 0.072 0.928 46 H 0.070 0.930 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.982 5.144 9.485 16.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.009 3.991 3 N -0.322 5.322 4 C -0.405 4.405 5 H 0.094 0.906 6 C -0.157 4.157 7 N -0.534 5.534 8 Si 0.708 3.292 9 H -0.215 1.215 10 H -0.231 1.231 11 H -0.192 1.192 12 C 0.047 3.953 13 H 0.097 0.903 14 C -0.222 4.222 15 C -0.016 4.016 16 N -0.352 5.352 17 C 0.371 3.629 18 O -0.431 6.431 19 C -0.233 4.233 20 C 0.007 3.993 21 O -0.080 6.080 22 C -0.003 4.003 23 C -0.086 4.086 24 C -0.085 4.085 25 C -0.150 4.150 26 C -0.120 4.120 27 C -0.073 4.073 28 C -0.169 4.169 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.246 0.754 41 H 0.239 0.761 42 H 0.154 0.846 43 H 0.147 0.853 44 H 0.151 0.849 45 H 0.091 0.909 46 H 0.088 0.912 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.121 4.985 9.837 17.141 hybrid contribution 0.920 -1.011 -0.495 1.454 sum -12.202 3.974 9.342 15.873 Atomic orbital electron populations 1.22349 0.98833 0.99369 1.02085 1.21041 0.92647 0.86657 0.98784 1.44235 1.74556 1.11440 1.01986 1.18651 1.39649 0.96714 0.85506 0.90571 1.25492 0.97224 0.97810 0.95194 1.69873 1.44258 1.41770 0.97504 0.86934 0.81223 0.83530 0.77556 1.21497 1.23145 1.19162 1.20792 0.90592 0.97374 0.86530 0.90343 1.22231 0.99914 1.00378 0.99653 1.21960 0.87398 0.97271 0.94933 1.45781 1.10564 1.59830 1.18988 1.17054 0.81566 0.78761 0.85551 1.90733 1.82949 1.51233 1.18230 1.21054 0.95243 1.10863 0.96125 1.24738 0.86656 0.92343 0.95611 1.83859 1.19453 1.66323 1.38369 1.19399 0.91983 1.02526 0.86421 1.19427 0.92229 1.01482 0.95490 1.20688 0.93906 0.97883 0.95991 1.21058 0.94377 1.00224 0.99352 1.20793 0.99750 0.99562 0.91863 1.18766 0.89081 1.02285 0.97155 1.20741 0.99958 0.99983 0.96202 0.92955 0.92369 0.94783 0.93505 0.94230 0.92632 0.93208 0.92094 0.93354 0.91945 0.92209 0.75426 0.76129 0.84571 0.85259 0.84906 0.90942 0.91152 0.91259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.16 9.83 37.16 0.37 -2.80 16 2 C 0.13 2.72 4.70 -4.04 -0.02 2.70 16 3 N -0.60 -12.37 1.42 -165.65 -0.23 -12.60 16 4 C -0.28 -6.75 9.50 -15.06 -0.14 -6.89 16 5 H 0.08 1.95 8.06 -52.49 -0.42 1.52 16 6 C 0.04 1.18 5.29 -17.43 -0.09 1.09 16 7 N -0.89 -25.26 13.97 55.49 0.78 -24.49 16 8 Si 0.88 21.11 25.23 -169.99 -4.29 16.82 16 9 H -0.29 -6.88 6.66 56.52 0.38 -6.51 16 10 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 11 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 12 C 0.15 2.69 2.87 -67.93 -0.19 2.49 16 13 H 0.08 1.38 7.89 -51.93 -0.41 0.97 16 14 C -0.16 -2.59 9.18 37.16 0.34 -2.25 16 15 C 0.11 1.79 4.33 -4.04 -0.02 1.77 16 16 N -0.70 -11.41 3.98 -61.49 -0.24 -11.65 16 17 C 0.58 10.07 7.56 -12.68 -0.10 9.97 16 18 O -0.55 -10.91 16.29 5.23 0.09 -10.83 16 19 C -0.23 -3.58 6.31 -103.25 -0.65 -4.24 16 20 C 0.07 1.03 11.52 29.95 0.34 1.37 16 21 O -0.18 -2.54 10.53 5.34 0.06 -2.49 16 22 C 0.04 0.61 7.05 -38.56 -0.27 0.34 16 23 C -0.08 -1.30 6.29 -104.98 -0.66 -1.96 16 24 C -0.07 -0.92 9.88 -39.40 -0.39 -1.31 16 25 C -0.13 -1.43 10.04 -39.56 -0.40 -1.83 16 26 C -0.10 -1.02 9.66 -39.56 -0.38 -1.40 16 27 C -0.07 -0.83 5.89 -104.50 -0.62 -1.45 16 28 C -0.11 -0.98 10.01 36.01 0.36 -0.62 16 29 H 0.05 0.96 4.89 -51.93 -0.25 0.71 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.05 1.06 3.44 -51.93 -0.18 0.88 16 33 H 0.04 0.74 6.43 -51.93 -0.33 0.41 16 34 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 35 H 0.05 0.78 6.66 -51.93 -0.35 0.44 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 1.08 6.96 -51.93 -0.36 0.72 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.41 6.63 6.81 -40.82 -0.28 6.35 16 41 H 0.22 2.52 7.41 -52.48 -0.39 2.14 16 42 H 0.14 1.95 7.54 -52.49 -0.40 1.55 16 43 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 44 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 45 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 46 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 47 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 LS Contribution 377.75 15.07 5.69 5.69 Total: -1.00 -30.27 377.75 -7.43 -37.69 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -6.75 Total: 6.85 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: -2.52 Total: -5.00 kcal Atomic # 7 Polarization: -49.04 SS G_CDS: 0.30 Total: -48.74 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: 0.14 Total: -13.31 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.29 Total: 16.82 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.27 -7.43 -37.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153850930.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.439 kcal (2) G-P(sol) polarization free energy of solvation -30.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds