Wall clock time and date at job start Tue Mar 31 2020 17:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46507 * 109.46878 * 2 1 4 4 C 1.36932 * 119.99944 * 274.57259 * 3 2 1 5 5 H 1.08001 * 120.00256 * 140.38413 * 4 3 2 6 6 C 1.38818 * 120.00152 * 320.39199 * 4 3 2 7 7 N 1.31621 * 119.99666 * 156.48813 * 6 4 3 8 8 Si 1.86800 * 119.99763 * 336.48291 * 6 4 3 9 9 H 1.48495 * 109.46684 * 95.30681 * 8 6 4 10 10 H 1.48502 * 109.46700 * 215.30566 * 8 6 4 11 11 H 1.48495 * 109.47377 * 335.30657 * 8 6 4 12 12 C 1.46497 * 119.99879 * 94.57804 * 3 2 1 13 13 H 1.08998 * 109.46870 * 180.02562 * 12 3 2 14 14 C 1.53002 * 109.47169 * 59.99799 * 12 3 2 15 15 C 1.53004 * 109.47085 * 299.99619 * 12 3 2 16 16 N 1.46499 * 109.47138 * 305.00687 * 15 12 3 17 17 C 1.34773 * 119.99927 * 180.02562 * 16 15 12 18 18 O 1.21652 * 120.00331 * 359.97438 * 17 16 15 19 19 C 1.47078 * 119.99962 * 179.97438 * 17 16 15 20 20 C 1.36048 * 127.14386 * 359.67924 * 19 17 16 21 21 O 1.33807 * 109.86500 * 179.88590 * 20 19 17 22 22 C 1.34908 * 111.34797 * 0.40141 * 21 20 19 23 23 C 1.40269 * 107.62121 * 359.76009 * 22 21 20 24 24 C 1.39075 * 120.28608 * 180.02562 * 23 22 21 25 25 C 1.37888 * 119.62662 * 359.97438 * 24 23 22 26 26 C 1.38644 * 120.20270 * 0.02562 * 25 24 23 27 27 C 1.37883 * 120.65224 * 0.02562 * 26 25 24 28 28 C 1.50702 * 120.01226 * 179.97438 * 27 26 25 29 29 H 1.08999 * 109.47066 * 299.99684 * 1 2 3 30 30 H 1.08997 * 109.46951 * 60.00217 * 1 2 3 31 31 H 1.09000 * 109.46509 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47543 * 240.00273 * 2 1 3 33 33 H 1.09000 * 109.47439 * 119.99845 * 2 1 3 34 34 H 0.97006 * 119.99373 * 179.97438 * 7 6 4 35 35 H 1.09000 * 109.47008 * 299.99706 * 14 12 3 36 36 H 1.08990 * 109.47188 * 60.00264 * 14 12 3 37 37 H 1.09003 * 109.46818 * 179.97438 * 14 12 3 38 38 H 1.09003 * 109.47058 * 65.00153 * 15 12 3 39 39 H 1.09000 * 109.46949 * 185.00165 * 15 12 3 40 40 H 0.97000 * 119.99786 * 359.97438 * 16 15 12 41 41 H 1.08009 * 125.06561 * 359.97438 * 20 19 17 42 42 H 1.07996 * 120.18952 * 179.97438 * 24 23 22 43 43 H 1.08001 * 119.90022 * 180.02562 * 25 24 23 44 44 H 1.07997 * 119.67217 * 179.97438 * 26 25 24 45 45 H 1.09008 * 109.46632 * 270.01612 * 28 27 26 46 46 H 1.08997 * 109.47257 * 30.01065 * 28 27 26 47 47 H 1.09000 * 109.47541 * 150.01945 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1573 2.0583 -1.1821 5 1 1.8867 3.1022 -1.2417 6 6 2.6460 1.4029 -2.3040 7 7 2.3639 1.8575 -3.5066 8 14 3.7040 -0.1239 -2.1069 9 1 2.8510 -1.3345 -2.2161 10 1 4.7389 -0.1498 -3.1716 11 1 4.3630 -0.1012 -0.7764 12 6 2.3579 2.0381 1.2647 13 1 2.6996 3.0539 1.0661 14 6 3.4691 1.2532 1.9647 15 6 1.1210 2.0834 2.1641 16 7 0.0193 2.7303 1.4471 17 6 -1.1778 2.8827 2.0472 18 8 -1.3437 2.4827 3.1841 19 6 -2.2837 3.5327 1.3277 20 6 -2.2581 4.0361 0.0640 21 8 -3.4553 4.5470 -0.2462 22 6 -4.3234 4.4213 0.7788 23 6 -3.6504 3.7800 1.8291 24 6 -4.3079 3.5158 3.0258 25 6 -5.6270 3.8885 3.1755 26 6 -6.2946 4.5225 2.1389 27 6 -5.6527 4.7883 0.9479 28 6 -6.3923 5.4777 -0.1696 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.7057 1.3997 -4.2906 35 1 3.1268 0.2376 2.1633 36 1 4.3502 1.2210 1.3241 37 1 3.7221 1.7422 2.9055 38 1 0.8315 1.0681 2.4351 39 1 1.3490 2.6496 3.0672 40 1 0.1517 3.0496 0.5408 41 1 -1.3999 4.0238 -0.5916 42 1 -3.7883 3.0216 3.8334 43 1 -6.1417 3.6859 4.1031 44 1 -7.3278 4.8103 2.2653 45 1 -6.8702 4.7309 -0.8038 46 1 -7.1517 6.1375 0.2501 47 1 -5.6902 6.0630 -0.7633 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153850930.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:13 Heat of formation + Delta-G solvation = -5.927702 kcal Electronic energy + Delta-G solvation = -28781.556089 eV Core-core repulsion = 24930.727273 eV Total energy + Delta-G solvation = -3850.828816 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.65098 -40.61352 -39.08621 -38.74112 -35.48303 -34.64851 -33.92614 -32.95167 -32.34659 -30.72108 -30.30682 -27.80631 -27.35837 -25.57839 -24.59132 -23.99065 -23.36794 -22.94436 -21.07701 -20.49161 -18.94622 -18.71959 -18.17662 -17.57825 -17.39117 -17.03292 -16.89543 -16.42096 -16.27382 -15.72232 -15.29996 -15.05593 -14.87580 -14.56705 -14.42691 -14.34374 -14.25706 -14.06666 -13.75560 -13.66199 -13.43196 -13.22317 -12.94612 -12.86926 -12.79233 -12.61747 -12.57368 -12.56070 -12.13865 -11.97902 -11.78858 -11.40315 -11.35012 -11.09534 -11.05782 -10.53648 -10.00421 -9.66531 -9.15261 -8.72045 -8.15757 -5.52864 -0.27564 0.28290 0.68994 1.34317 1.45636 1.54575 1.60857 2.18921 2.24853 2.47617 2.71649 3.09497 3.34156 3.38754 3.51187 3.72285 3.96656 4.00645 4.18898 4.29244 4.32242 4.33279 4.40544 4.45524 4.52545 4.58273 4.69093 4.73018 4.76659 4.79425 4.82114 4.86776 4.89086 4.99536 5.08605 5.20574 5.27618 5.28719 5.29810 5.37053 5.40798 5.47020 5.49394 5.57871 5.60338 6.00125 6.03509 6.25141 6.58938 7.04388 7.21312 7.68047 8.13759 9.02512 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.017212 B = 0.003338 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.353287 B = 8386.820273 C = 9404.978561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.130 3.870 3 N -0.604 5.604 4 C -0.247 4.247 5 H 0.060 0.940 6 C -0.006 4.006 7 N -0.939 5.939 8 Si 0.925 3.075 9 H -0.287 1.287 10 H -0.318 1.318 11 H -0.255 1.255 12 C 0.156 3.844 13 H 0.077 0.923 14 C -0.156 4.156 15 C 0.118 3.882 16 N -0.697 5.697 17 C 0.586 3.414 18 O -0.581 6.581 19 C -0.257 4.257 20 C 0.088 3.912 21 O -0.184 6.184 22 C 0.020 3.980 23 C -0.112 4.112 24 C -0.096 4.096 25 C -0.119 4.119 26 C -0.094 4.094 27 C -0.076 4.076 28 C -0.111 4.111 29 H 0.055 0.945 30 H 0.036 0.964 31 H 0.050 0.950 32 H 0.026 0.974 33 H 0.062 0.938 34 H 0.259 0.741 35 H 0.053 0.947 36 H 0.045 0.955 37 H 0.078 0.922 38 H 0.057 0.943 39 H 0.073 0.927 40 H 0.409 0.591 41 H 0.238 0.762 42 H 0.121 0.879 43 H 0.161 0.839 44 H 0.175 0.825 45 H 0.080 0.920 46 H 0.097 0.903 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.656 5.333 11.182 19.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.005 3.995 3 N -0.328 5.328 4 C -0.377 4.377 5 H 0.078 0.922 6 C -0.204 4.204 7 N -0.583 5.583 8 Si 0.756 3.244 9 H -0.215 1.215 10 H -0.247 1.247 11 H -0.179 1.179 12 C 0.049 3.951 13 H 0.095 0.905 14 C -0.216 4.216 15 C -0.008 4.008 16 N -0.347 5.347 17 C 0.374 3.626 18 O -0.464 6.464 19 C -0.262 4.262 20 C 0.020 3.980 21 O -0.083 6.083 22 C -0.026 4.026 23 C -0.113 4.113 24 C -0.114 4.114 25 C -0.137 4.137 26 C -0.111 4.111 27 C -0.076 4.076 28 C -0.167 4.167 29 H 0.074 0.926 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.044 0.956 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.097 0.903 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.246 0.754 41 H 0.254 0.746 42 H 0.139 0.861 43 H 0.178 0.822 44 H 0.192 0.808 45 H 0.099 0.901 46 H 0.116 0.884 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.789 5.168 11.576 19.479 hybrid contribution 1.306 -0.989 -0.922 1.880 sum -13.482 4.179 10.654 17.685 Atomic orbital electron populations 1.22214 0.97899 1.00219 1.01148 1.21090 0.93364 0.86244 0.98798 1.44290 1.74867 1.11545 1.02069 1.18643 1.36574 0.95975 0.86491 0.92241 1.25953 0.98981 1.00290 0.95168 1.69975 1.46538 1.43685 0.98106 0.86152 0.79666 0.81286 0.77330 1.21504 1.24725 1.17885 1.20884 0.91690 0.97268 0.85218 0.90493 1.22144 0.98283 1.00617 1.00523 1.21873 0.86654 0.97233 0.94998 1.45765 1.10505 1.59600 1.18865 1.17233 0.81899 0.78250 0.85186 1.90703 1.83464 1.52713 1.19494 1.21048 0.95498 1.12545 0.97094 1.24986 0.86974 0.90971 0.95100 1.83846 1.19546 1.66287 1.38657 1.19827 0.93064 1.03643 0.86078 1.19687 0.92329 1.02648 0.96645 1.20765 0.95483 0.99683 0.95456 1.21458 0.93065 0.98348 1.00786 1.21298 1.01337 0.97930 0.90576 1.19296 0.88164 1.01572 0.98582 1.20810 1.00152 1.00322 0.95432 0.92603 0.94461 0.93108 0.95564 0.91983 0.93187 0.92798 0.93590 0.90283 0.92466 0.90864 0.75449 0.74580 0.86083 0.82171 0.80795 0.90115 0.88402 0.92041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.75 9.83 71.98 0.71 -5.04 16 2 C 0.13 5.09 4.70 86.38 0.41 5.50 16 3 N -0.60 -24.36 1.42 -678.01 -0.96 -25.32 16 4 C -0.25 -12.07 9.50 84.04 0.80 -11.27 16 5 H 0.06 3.08 8.06 -2.91 -0.02 3.06 16 6 C -0.01 -0.34 5.29 84.86 0.45 0.11 16 7 N -0.94 -54.42 13.97 21.65 0.30 -54.12 16 8 Si 0.92 43.80 25.23 68.60 1.73 45.53 16 9 H -0.29 -13.45 6.66 99.48 0.66 -12.79 16 10 H -0.32 -15.69 7.11 99.48 0.71 -14.98 16 11 H -0.25 -11.40 7.11 99.48 0.71 -10.69 16 12 C 0.16 5.15 2.87 44.99 0.13 5.28 16 13 H 0.08 2.59 7.89 -2.39 -0.02 2.57 16 14 C -0.16 -4.57 9.18 71.98 0.66 -3.91 16 15 C 0.12 3.66 4.33 86.38 0.37 4.03 16 16 N -0.70 -22.52 3.98 -466.69 -1.86 -24.38 16 17 C 0.59 20.48 7.56 86.56 0.65 21.14 16 18 O -0.58 -23.35 16.29 -4.20 -0.07 -23.42 16 19 C -0.26 -8.29 6.31 -18.98 -0.12 -8.40 16 20 C 0.09 2.47 11.52 67.31 0.78 3.24 16 21 O -0.18 -5.21 10.53 -3.82 -0.04 -5.25 16 22 C 0.02 0.55 7.05 22.93 0.16 0.72 16 23 C -0.11 -3.47 6.29 -20.09 -0.13 -3.60 16 24 C -0.10 -2.65 9.88 22.39 0.22 -2.43 16 25 C -0.12 -2.31 10.04 22.28 0.22 -2.08 16 26 C -0.09 -1.57 9.66 22.28 0.22 -1.35 16 27 C -0.08 -1.58 5.89 -19.78 -0.12 -1.70 16 28 C -0.11 -1.64 10.01 71.24 0.71 -0.92 16 29 H 0.06 2.01 4.89 -2.39 -0.01 2.00 16 30 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.03 1.16 3.44 -2.39 -0.01 1.15 16 33 H 0.06 2.17 6.43 -2.39 -0.02 2.15 16 34 H 0.26 14.59 8.31 -92.70 -0.77 13.82 16 35 H 0.05 1.53 6.66 -2.39 -0.02 1.51 16 36 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.06 1.87 6.96 -2.39 -0.02 1.86 16 39 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.41 13.26 6.81 -92.71 -0.63 12.63 16 41 H 0.24 5.51 7.41 -2.91 -0.02 5.49 16 42 H 0.12 3.61 7.54 -2.91 -0.02 3.59 16 43 H 0.16 2.04 8.06 -2.91 -0.02 2.01 16 44 H 0.17 1.46 8.06 -2.91 -0.02 1.44 16 45 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 46 H 0.10 0.91 8.08 -2.39 -0.02 0.89 16 47 H 0.06 1.01 8.09 -2.39 -0.02 0.99 16 Total: -1.00 -66.89 377.75 5.55 -61.33 By element: Atomic # 1 Polarization: 26.00 SS G_CDS: 0.32 Total: 26.32 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: 6.13 Total: -0.69 kcal Atomic # 7 Polarization: -101.31 SS G_CDS: -2.51 Total: -103.82 kcal Atomic # 8 Polarization: -28.56 SS G_CDS: -0.11 Total: -28.67 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 1.73 Total: 45.53 kcal Total: -66.89 5.55 -61.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153850930.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.404 kcal (2) G-P(sol) polarization free energy of solvation -66.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds