Wall clock time and date at job start Tue Mar 31 2020 17:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46499 * 109.47033 * 2 1 4 4 C 1.36938 * 119.99844 * 275.71382 * 3 2 1 5 5 H 1.07997 * 120.00303 * 33.28717 * 4 3 2 6 6 C 1.38810 * 119.99490 * 213.28691 * 4 3 2 7 7 N 1.31621 * 120.00368 * 17.19391 * 6 4 3 8 8 Si 1.86805 * 119.99812 * 197.18870 * 6 4 3 9 9 H 1.48503 * 109.46951 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47187 * 120.00232 * 8 6 4 11 11 H 1.48497 * 109.47345 * 240.00134 * 8 6 4 12 12 C 1.46499 * 120.00060 * 95.71231 * 3 2 1 13 13 H 1.08991 * 109.47247 * 180.11600 * 12 3 2 14 14 C 1.53000 * 109.46969 * 60.11735 * 12 3 2 15 15 C 1.53003 * 109.47036 * 300.11930 * 12 3 2 16 16 N 1.46502 * 109.46754 * 304.99556 * 15 12 3 17 17 C 1.34782 * 119.99661 * 180.02562 * 16 15 12 18 18 O 1.21604 * 119.99906 * 0.02562 * 17 16 15 19 19 C 1.47429 * 119.99858 * 180.02562 * 17 16 15 20 20 C 1.38039 * 126.41217 * 0.02686 * 19 17 16 21 21 N 1.34264 * 107.41564 * 179.97438 * 20 19 17 22 22 C 1.46498 * 125.75558 * 179.97438 * 21 20 19 23 23 N 1.39941 * 108.48960 * 0.26546 * 21 20 19 24 24 C 1.30442 * 108.89315 * 359.54410 * 23 21 20 25 25 C 1.50705 * 125.98394 * 180.15871 * 24 23 21 26 26 F 1.39906 * 109.46713 * 120.33521 * 25 24 23 27 27 F 1.39904 * 109.47385 * 240.33252 * 25 24 23 28 28 H 1.08999 * 109.47101 * 299.99461 * 1 2 3 29 29 H 1.09001 * 109.47073 * 60.00359 * 1 2 3 30 30 H 1.09001 * 109.46926 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46977 * 239.99814 * 2 1 3 32 32 H 1.08998 * 109.47329 * 120.00354 * 2 1 3 33 33 H 0.96998 * 119.99946 * 180.02562 * 7 6 4 34 34 H 1.08998 * 109.47307 * 59.99996 * 14 12 3 35 35 H 1.08997 * 109.47378 * 180.02562 * 14 12 3 36 36 H 1.09005 * 109.47196 * 300.00128 * 14 12 3 37 37 H 1.09005 * 109.46925 * 184.99759 * 15 12 3 38 38 H 1.09001 * 109.47508 * 65.00054 * 15 12 3 39 39 H 0.96996 * 120.00476 * 0.02562 * 16 15 12 40 40 H 1.07995 * 126.29531 * 359.97438 * 20 19 17 41 41 H 1.09002 * 109.47081 * 90.00251 * 22 21 20 42 42 H 1.09003 * 109.47137 * 210.00556 * 22 21 20 43 43 H 1.09004 * 109.47060 * 329.99951 * 22 21 20 44 44 H 1.08992 * 109.47309 * 0.33769 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1352 2.0661 -1.1800 5 1 1.4374 1.8810 -1.9833 6 6 3.1507 2.9982 -1.3438 7 7 4.1869 2.9921 -0.5321 8 14 3.0468 4.2612 -2.7162 9 1 1.7913 4.0572 -3.4826 10 1 3.0541 5.6271 -2.1335 11 1 4.2120 4.1038 -3.6231 12 6 2.3816 2.0297 1.2624 13 1 2.7181 3.0473 1.0645 14 6 3.5076 1.2419 1.9349 15 6 1.1625 2.0663 2.1862 16 7 0.0459 2.7164 1.4956 17 6 -1.1395 2.8624 2.1202 18 8 -1.2820 2.4549 3.2570 19 6 -2.2634 3.5161 1.4251 20 6 -2.2488 4.0244 0.1418 21 7 -3.4682 4.5298 -0.1041 22 6 -3.8937 5.1709 -1.3507 23 7 -4.2621 4.3468 1.0337 24 6 -3.5570 3.7390 1.9475 25 6 -4.0363 3.3494 3.3221 26 9 -3.9287 1.9632 3.4779 27 9 -3.2523 3.9894 4.2881 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 4.8963 3.6437 -0.6464 34 1 4.3761 1.2158 1.2768 35 1 3.7776 1.7241 2.8744 36 1 3.1711 0.2242 2.1329 37 1 1.4072 2.6265 3.0887 38 1 0.8801 1.0486 2.4557 39 1 0.1597 3.0418 0.5890 40 1 -1.4108 4.0170 -0.5393 41 1 -4.3034 4.4186 -2.0248 42 1 -4.6570 5.9180 -1.1330 43 1 -3.0373 5.6532 -1.8220 44 1 -5.0773 3.6488 3.4424 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153861313.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:59 Heat of formation + Delta-G solvation = -35.051464 kcal Electronic energy + Delta-G solvation = -30124.606953 eV Core-core repulsion = 25750.578457 eV Total energy + Delta-G solvation = -4374.028496 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.161 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -48.70517 -46.72906 -41.53632 -38.79619 -36.80632 -33.94999 -33.54815 -31.92011 -31.39438 -30.31798 -28.54878 -28.16019 -26.10779 -24.92136 -23.95678 -22.38592 -21.69911 -20.66434 -19.69033 -19.25373 -17.82487 -17.06121 -17.00677 -16.86606 -16.40929 -15.77398 -15.65947 -15.30219 -14.72694 -14.67839 -13.98154 -13.83759 -13.54977 -13.47233 -13.24511 -13.06466 -12.93644 -12.89012 -12.67581 -12.51714 -12.27623 -12.02108 -11.81701 -11.48909 -11.45128 -11.09660 -11.00978 -10.96290 -10.86503 -10.65242 -10.32047 -10.09740 -9.85333 -9.63182 -9.43402 -9.40987 -8.84891 -8.55705 -8.25265 -6.68962 -5.92172 -3.40728 1.40763 1.83469 1.99311 3.23033 3.30412 3.34316 3.57632 3.80071 3.90278 4.09212 4.35775 4.37908 4.58385 4.79700 4.83130 5.09720 5.14774 5.20605 5.22812 5.37105 5.41026 5.61642 5.92921 6.01441 6.08394 6.24334 6.30379 6.42190 6.52917 6.55975 6.58823 6.66155 6.71350 6.85570 6.92873 7.14548 7.18680 7.19963 7.49683 7.58453 7.72669 8.24557 8.39746 8.85459 9.12578 9.74595 10.32687 11.14297 Molecular weight = 330.16amu Principal moments of inertia in cm(-1) A = 0.012154 B = 0.004649 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.127476 B = 6021.344336 C = 7324.153542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.141 3.859 3 N -0.583 5.583 4 C -0.262 4.262 5 H 0.063 0.937 6 C 0.011 3.989 7 N -0.888 5.888 8 Si 0.894 3.106 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.290 1.290 12 C 0.177 3.823 13 H 0.099 0.901 14 C -0.144 4.144 15 C 0.105 3.895 16 N -0.698 5.698 17 C 0.577 3.423 18 O -0.542 6.542 19 C -0.249 4.249 20 C 0.104 3.896 21 N -0.353 5.353 22 C 0.095 3.905 23 N -0.271 5.271 24 C 0.044 3.956 25 C 0.368 3.632 26 F -0.181 7.181 27 F -0.182 7.182 28 H 0.054 0.946 29 H 0.044 0.956 30 H 0.032 0.968 31 H 0.039 0.961 32 H 0.037 0.963 33 H 0.254 0.746 34 H 0.077 0.923 35 H 0.033 0.967 36 H 0.030 0.970 37 H 0.053 0.947 38 H 0.054 0.946 39 H 0.406 0.594 40 H 0.194 0.806 41 H 0.083 0.917 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.043 3.666 0.295 14.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.014 3.986 3 N -0.304 5.304 4 C -0.392 4.392 5 H 0.081 0.919 6 C -0.189 4.189 7 N -0.531 5.531 8 Si 0.723 3.277 9 H -0.203 1.203 10 H -0.216 1.216 11 H -0.217 1.217 12 C 0.069 3.931 13 H 0.117 0.883 14 C -0.203 4.203 15 C -0.020 4.020 16 N -0.349 5.349 17 C 0.363 3.637 18 O -0.421 6.421 19 C -0.263 4.263 20 C -0.046 4.046 21 N -0.133 5.133 22 C -0.046 4.046 23 N -0.093 5.093 24 C -0.124 4.124 25 C 0.312 3.688 26 F -0.162 7.162 27 F -0.163 7.163 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.096 0.904 35 H 0.052 0.948 36 H 0.049 0.951 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.242 0.758 40 H 0.211 0.789 41 H 0.102 0.898 42 H 0.113 0.887 43 H 0.115 0.885 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -15.110 4.022 0.679 15.651 hybrid contribution 1.029 0.491 -1.224 1.673 sum -14.081 4.513 -0.545 14.797 Atomic orbital electron populations 1.22444 0.99945 0.99024 1.01526 1.20754 0.91679 0.87417 0.98706 1.43888 1.75974 1.08303 1.02254 1.19104 1.08534 1.18189 0.93370 0.91912 1.25161 0.94591 1.01434 0.97711 1.70012 1.07893 1.35830 1.39354 0.86386 0.77628 0.81682 0.81962 1.20338 1.21580 1.21662 1.20496 0.88982 0.99426 0.84181 0.88320 1.22016 1.01070 0.98012 0.99239 1.22146 0.87814 0.96359 0.95726 1.45750 1.10724 1.59650 1.18750 1.17179 0.81797 0.79113 0.85644 1.90788 1.83011 1.50559 1.17700 1.20376 0.96324 1.14077 0.95566 1.23334 0.89683 0.94640 0.96929 1.48278 1.08483 1.44336 1.12161 1.22092 1.02972 0.98526 0.80978 1.76960 1.18099 1.21120 0.93146 1.22832 0.93150 0.99728 0.96701 1.19081 0.94242 0.74888 0.80624 1.93061 1.97234 1.30295 1.95640 1.93057 1.78024 1.81293 1.63903 0.92708 0.93717 0.94923 0.94222 0.94456 0.93572 0.90368 0.94814 0.95126 0.92868 0.92746 0.75800 0.78881 0.89846 0.88740 0.88494 0.86187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.07 9.86 37.16 0.37 -2.70 16 2 C 0.14 2.81 5.67 -4.04 -0.02 2.78 16 3 N -0.58 -12.69 1.85 -165.66 -0.31 -13.00 16 4 C -0.26 -6.22 9.26 -15.06 -0.14 -6.35 16 5 H 0.06 1.49 7.89 -52.49 -0.41 1.07 16 6 C 0.01 0.28 4.85 -17.43 -0.08 0.19 16 7 N -0.89 -22.96 10.60 55.49 0.59 -22.38 16 8 Si 0.89 19.24 29.59 -169.99 -5.03 14.21 16 9 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 10 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 12 C 0.18 3.72 1.92 -67.93 -0.13 3.59 16 13 H 0.10 2.35 6.04 -51.93 -0.31 2.04 16 14 C -0.14 -2.93 9.05 37.16 0.34 -2.59 16 15 C 0.10 2.03 4.34 -4.04 -0.02 2.02 16 16 N -0.70 -12.76 3.97 -61.38 -0.24 -13.01 16 17 C 0.58 10.84 7.58 -12.52 -0.09 10.75 16 18 O -0.54 -11.72 14.14 5.27 0.07 -11.64 16 19 C -0.25 -4.01 6.13 -105.07 -0.64 -4.66 16 20 C 0.10 1.34 10.99 -16.56 -0.18 1.16 16 21 N -0.35 -4.08 3.98 -67.60 -0.27 -4.35 16 22 C 0.09 0.62 11.44 59.85 0.68 1.30 16 23 N -0.27 -3.70 12.50 33.89 0.42 -3.27 16 24 C 0.04 0.67 6.70 -82.02 -0.55 0.12 16 25 C 0.37 5.26 5.11 36.01 0.18 5.45 16 26 F -0.18 -3.01 16.28 2.25 0.04 -2.97 16 27 F -0.18 -3.00 16.28 2.25 0.04 -2.96 16 28 H 0.05 1.04 4.99 -51.93 -0.26 0.78 16 29 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.04 0.82 8.09 -51.93 -0.42 0.40 16 32 H 0.04 0.73 6.45 -51.93 -0.33 0.39 16 33 H 0.25 6.47 8.31 -40.82 -0.34 6.13 16 34 H 0.08 1.80 7.39 -51.93 -0.38 1.42 16 35 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.03 0.58 6.67 -51.93 -0.35 0.23 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.05 1.09 7.05 -51.93 -0.37 0.73 16 39 H 0.41 7.26 6.82 -40.82 -0.28 6.98 16 40 H 0.19 2.07 7.46 -52.49 -0.39 1.68 16 41 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.12 1.19 8.14 -51.93 -0.42 0.76 16 LS Contribution 365.70 15.07 5.51 5.51 Total: -1.00 -30.63 365.70 -5.50 -36.13 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -6.02 Total: 6.67 kcal Atomic # 6 Polarization: 11.34 SS G_CDS: -0.29 Total: 11.05 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: 0.19 Total: -56.00 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.07 Total: -11.64 kcal Atomic # 9 Polarization: -6.00 SS G_CDS: 0.07 Total: -5.93 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.03 Total: 14.21 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.63 -5.50 -36.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153861313.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.075 kcal (2) G-P(sol) polarization free energy of solvation -30.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds