Wall clock time and date at job start Tue Mar 31 2020 17:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46499 * 109.47033 * 2 1 4 4 C 1.36938 * 119.99844 * 275.71382 * 3 2 1 5 5 H 1.07997 * 120.00303 * 33.28717 * 4 3 2 6 6 C 1.38810 * 119.99490 * 213.28691 * 4 3 2 7 7 N 1.31621 * 120.00368 * 17.19391 * 6 4 3 8 8 Si 1.86805 * 119.99812 * 197.18870 * 6 4 3 9 9 H 1.48503 * 109.46951 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47187 * 120.00232 * 8 6 4 11 11 H 1.48497 * 109.47345 * 240.00134 * 8 6 4 12 12 C 1.46499 * 120.00060 * 95.71231 * 3 2 1 13 13 H 1.08991 * 109.47247 * 180.11600 * 12 3 2 14 14 C 1.53000 * 109.46969 * 60.11735 * 12 3 2 15 15 C 1.53003 * 109.47036 * 300.11930 * 12 3 2 16 16 N 1.46502 * 109.46754 * 304.99556 * 15 12 3 17 17 C 1.34782 * 119.99661 * 180.02562 * 16 15 12 18 18 O 1.21604 * 119.99906 * 0.02562 * 17 16 15 19 19 C 1.47429 * 119.99858 * 180.02562 * 17 16 15 20 20 C 1.38039 * 126.41217 * 0.02686 * 19 17 16 21 21 N 1.34264 * 107.41564 * 179.97438 * 20 19 17 22 22 C 1.46498 * 125.75558 * 179.97438 * 21 20 19 23 23 N 1.39941 * 108.48960 * 0.26546 * 21 20 19 24 24 C 1.30442 * 108.89315 * 359.54410 * 23 21 20 25 25 C 1.50705 * 125.98394 * 180.15871 * 24 23 21 26 26 F 1.39906 * 109.46713 * 120.33521 * 25 24 23 27 27 F 1.39904 * 109.47385 * 240.33252 * 25 24 23 28 28 H 1.08999 * 109.47101 * 299.99461 * 1 2 3 29 29 H 1.09001 * 109.47073 * 60.00359 * 1 2 3 30 30 H 1.09001 * 109.46926 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46977 * 239.99814 * 2 1 3 32 32 H 1.08998 * 109.47329 * 120.00354 * 2 1 3 33 33 H 0.96998 * 119.99946 * 180.02562 * 7 6 4 34 34 H 1.08998 * 109.47307 * 59.99996 * 14 12 3 35 35 H 1.08997 * 109.47378 * 180.02562 * 14 12 3 36 36 H 1.09005 * 109.47196 * 300.00128 * 14 12 3 37 37 H 1.09005 * 109.46925 * 184.99759 * 15 12 3 38 38 H 1.09001 * 109.47508 * 65.00054 * 15 12 3 39 39 H 0.96996 * 120.00476 * 0.02562 * 16 15 12 40 40 H 1.07995 * 126.29531 * 359.97438 * 20 19 17 41 41 H 1.09002 * 109.47081 * 90.00251 * 22 21 20 42 42 H 1.09003 * 109.47137 * 210.00556 * 22 21 20 43 43 H 1.09004 * 109.47060 * 329.99951 * 22 21 20 44 44 H 1.08992 * 109.47309 * 0.33769 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1352 2.0661 -1.1800 5 1 1.4374 1.8810 -1.9833 6 6 3.1507 2.9982 -1.3438 7 7 4.1869 2.9921 -0.5321 8 14 3.0468 4.2612 -2.7162 9 1 1.7913 4.0572 -3.4826 10 1 3.0541 5.6271 -2.1335 11 1 4.2120 4.1038 -3.6231 12 6 2.3816 2.0297 1.2624 13 1 2.7181 3.0473 1.0645 14 6 3.5076 1.2419 1.9349 15 6 1.1625 2.0663 2.1862 16 7 0.0459 2.7164 1.4956 17 6 -1.1395 2.8624 2.1202 18 8 -1.2820 2.4549 3.2570 19 6 -2.2634 3.5161 1.4251 20 6 -2.2488 4.0244 0.1418 21 7 -3.4682 4.5298 -0.1041 22 6 -3.8937 5.1709 -1.3507 23 7 -4.2621 4.3468 1.0337 24 6 -3.5570 3.7390 1.9475 25 6 -4.0363 3.3494 3.3221 26 9 -3.9287 1.9632 3.4779 27 9 -3.2523 3.9894 4.2881 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 4.8963 3.6437 -0.6464 34 1 4.3761 1.2158 1.2768 35 1 3.7776 1.7241 2.8744 36 1 3.1711 0.2242 2.1329 37 1 1.4072 2.6265 3.0887 38 1 0.8801 1.0486 2.4557 39 1 0.1597 3.0418 0.5890 40 1 -1.4108 4.0170 -0.5393 41 1 -4.3034 4.4186 -2.0248 42 1 -4.6570 5.9180 -1.1330 43 1 -3.0373 5.6532 -1.8220 44 1 -5.0773 3.6488 3.4424 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153861313.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:58 Heat of formation + Delta-G solvation = -53.421517 kcal Electronic energy + Delta-G solvation = -30125.403538 eV Core-core repulsion = 25750.578457 eV Total energy + Delta-G solvation = -4374.825081 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.161 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -49.87188 -47.91955 -42.57277 -40.27487 -38.45917 -35.21086 -34.76633 -33.68683 -32.88800 -31.55529 -29.88001 -29.41809 -27.39978 -26.13691 -25.73196 -23.56971 -23.23975 -21.76931 -21.06903 -20.83575 -19.11906 -18.50769 -18.21805 -18.08858 -17.60992 -16.92603 -16.77864 -16.70902 -16.28364 -16.23971 -15.45518 -15.32399 -14.81908 -14.77808 -14.39597 -14.27323 -14.24913 -13.92686 -13.90543 -13.80948 -13.52870 -13.46273 -13.41006 -13.11718 -12.79110 -12.65853 -12.52418 -12.52049 -12.35947 -12.03678 -11.97292 -11.81192 -11.31776 -11.12778 -10.90789 -10.80038 -10.39948 -10.04551 -9.67502 -8.48476 -7.76754 -5.27458 0.39190 0.65405 1.14283 1.52326 1.57359 1.64924 2.40153 2.43518 2.58683 2.64990 3.14470 3.37404 3.37831 3.69349 3.79274 3.87193 4.03101 4.19783 4.27523 4.34588 4.41586 4.50124 4.56943 4.62964 4.69667 4.73389 4.84902 4.89763 4.94815 4.97557 5.03483 5.10702 5.25934 5.35807 5.57480 5.64174 5.69160 5.74584 5.81356 5.91422 6.16322 6.54702 6.80351 7.28319 7.41979 7.96897 8.51263 9.27637 Molecular weight = 330.16amu Principal moments of inertia in cm(-1) A = 0.012154 B = 0.004649 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.127476 B = 6021.344336 C = 7324.153542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.140 3.860 3 N -0.590 5.590 4 C -0.258 4.258 5 H 0.067 0.933 6 C -0.034 4.034 7 N -0.917 5.917 8 Si 0.952 3.048 9 H -0.258 1.258 10 H -0.293 1.293 11 H -0.306 1.306 12 C 0.185 3.815 13 H 0.072 0.928 14 C -0.135 4.135 15 C 0.119 3.881 16 N -0.694 5.694 17 C 0.578 3.422 18 O -0.578 6.578 19 C -0.287 4.287 20 C 0.121 3.879 21 N -0.341 5.341 22 C 0.081 3.919 23 N -0.271 5.271 24 C 0.031 3.969 25 C 0.358 3.642 26 F -0.199 7.199 27 F -0.199 7.199 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.050 0.950 31 H 0.032 0.968 32 H 0.040 0.960 33 H 0.247 0.753 34 H 0.049 0.951 35 H 0.047 0.953 36 H 0.040 0.960 37 H 0.050 0.950 38 H 0.049 0.951 39 H 0.408 0.592 40 H 0.216 0.784 41 H 0.101 0.899 42 H 0.108 0.892 43 H 0.121 0.879 44 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.938 4.355 -1.382 16.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.014 3.986 3 N -0.312 5.312 4 C -0.388 4.388 5 H 0.084 0.916 6 C -0.231 4.231 7 N -0.562 5.562 8 Si 0.782 3.218 9 H -0.182 1.182 10 H -0.220 1.220 11 H -0.234 1.234 12 C 0.077 3.923 13 H 0.090 0.910 14 C -0.195 4.195 15 C -0.007 4.007 16 N -0.344 5.344 17 C 0.365 3.635 18 O -0.459 6.459 19 C -0.302 4.302 20 C -0.031 4.031 21 N -0.120 5.120 22 C -0.057 4.057 23 N -0.095 5.095 24 C -0.137 4.137 25 C 0.302 3.698 26 F -0.180 7.180 27 F -0.180 7.180 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.050 0.950 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.245 0.755 40 H 0.233 0.767 41 H 0.119 0.881 42 H 0.126 0.874 43 H 0.139 0.861 44 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -17.055 4.714 -1.031 17.725 hybrid contribution 1.587 0.270 -0.785 1.792 sum -15.468 4.985 -1.816 16.352 Atomic orbital electron populations 1.22249 0.98128 1.00056 1.00946 1.20814 0.92919 0.86377 0.98468 1.44006 1.76062 1.09049 1.02054 1.19316 1.07943 1.17791 0.93793 0.91578 1.25773 0.94456 1.03190 0.99729 1.70161 1.08532 1.36368 1.41092 0.85452 0.77603 0.79282 0.79489 1.18179 1.22048 1.23390 1.20316 0.89656 0.97953 0.84335 0.91002 1.21887 0.99706 0.98751 0.99136 1.21860 0.87532 0.96120 0.95184 1.45644 1.10478 1.59560 1.18698 1.17531 0.82213 0.78474 0.85269 1.90759 1.83630 1.52214 1.19302 1.20266 0.96053 1.16616 0.97283 1.23567 0.90608 0.92986 0.95912 1.48736 1.07715 1.42876 1.12689 1.22600 1.04630 0.99313 0.79133 1.76924 1.18269 1.20717 0.93543 1.22946 0.93084 1.00344 0.97340 1.19673 0.96096 0.73864 0.80124 1.93014 1.97401 1.31846 1.95717 1.93012 1.78832 1.81522 1.64639 0.93731 0.93693 0.93107 0.94958 0.94181 0.94389 0.93230 0.93401 0.94084 0.93195 0.93313 0.75488 0.76702 0.88086 0.87369 0.86055 0.81625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.31 9.86 71.98 0.71 -4.60 16 2 C 0.14 5.44 5.67 86.38 0.49 5.93 16 3 N -0.59 -25.40 1.85 -678.04 -1.25 -26.65 16 4 C -0.26 -11.99 9.26 84.03 0.78 -11.21 16 5 H 0.07 3.01 7.89 -2.91 -0.02 2.98 16 6 C -0.03 -1.66 4.85 84.86 0.41 -1.24 16 7 N -0.92 -48.01 10.60 21.65 0.23 -47.78 16 8 Si 0.95 38.98 29.59 68.60 2.03 41.01 16 9 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 10 H -0.29 -12.13 7.11 99.48 0.71 -11.43 16 11 H -0.31 -13.29 7.11 99.48 0.71 -12.58 16 12 C 0.18 7.80 1.92 44.99 0.09 7.89 16 13 H 0.07 3.48 6.04 -2.39 -0.01 3.46 16 14 C -0.14 -5.54 9.05 71.98 0.65 -4.89 16 15 C 0.12 4.61 4.34 86.38 0.37 4.99 16 16 N -0.69 -25.10 3.97 -466.35 -1.85 -26.95 16 17 C 0.58 21.63 7.58 86.66 0.66 22.29 16 18 O -0.58 -25.36 14.14 -4.04 -0.06 -25.42 16 19 C -0.29 -8.97 6.13 -20.15 -0.12 -9.10 16 20 C 0.12 2.83 10.99 84.27 0.93 3.76 16 21 N -0.34 -6.82 3.98 -367.78 -1.46 -8.28 16 22 C 0.08 0.73 11.44 127.77 1.46 2.19 16 23 N -0.27 -6.79 12.50 -46.68 -0.58 -7.37 16 24 C 0.03 0.90 6.70 43.52 0.29 1.19 16 25 C 0.36 9.99 5.11 71.24 0.36 10.36 16 26 F -0.20 -6.60 16.28 44.97 0.73 -5.86 16 27 F -0.20 -6.59 16.28 44.97 0.73 -5.86 16 28 H 0.04 1.63 4.99 -2.39 -0.01 1.62 16 29 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.03 1.29 8.09 -2.38 -0.02 1.27 16 32 H 0.04 1.52 6.45 -2.39 -0.02 1.51 16 33 H 0.25 12.81 8.31 -92.71 -0.77 12.04 16 34 H 0.05 2.31 7.39 -2.39 -0.02 2.29 16 35 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.04 1.55 6.67 -2.38 -0.02 1.53 16 37 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 38 H 0.05 1.95 7.05 -2.39 -0.02 1.93 16 39 H 0.41 14.24 6.82 -92.71 -0.63 13.60 16 40 H 0.22 3.92 7.46 -2.91 -0.02 3.90 16 41 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.17 2.97 8.14 -2.39 -0.02 2.95 16 Total: -1.00 -66.81 365.70 6.00 -60.81 By element: Atomic # 1 Polarization: 24.41 SS G_CDS: 0.41 Total: 24.82 kcal Atomic # 6 Polarization: 20.46 SS G_CDS: 7.08 Total: 27.54 kcal Atomic # 7 Polarization: -112.12 SS G_CDS: -4.92 Total: -117.04 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: -0.06 Total: -25.42 kcal Atomic # 9 Polarization: -13.19 SS G_CDS: 1.46 Total: -11.72 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 2.03 Total: 41.01 kcal Total: -66.81 6.00 -60.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153861313.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.388 kcal (2) G-P(sol) polarization free energy of solvation -66.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds