Wall clock time and date at job start Tue Mar 31 2020 17:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46508 * 109.46860 * 2 1 4 4 C 1.36940 * 119.99607 * 84.27419 * 3 2 1 5 5 H 1.07993 * 119.99934 * 28.84568 * 4 3 2 6 6 C 1.38813 * 119.99582 * 209.11731 * 4 3 2 7 7 N 1.31618 * 119.99904 * 18.61774 * 6 4 3 8 8 Si 1.86797 * 119.99828 * 198.62283 * 6 4 3 9 9 H 1.48503 * 109.47417 * 89.99941 * 8 6 4 10 10 H 1.48502 * 109.46999 * 209.99801 * 8 6 4 11 11 H 1.48501 * 109.47018 * 329.99643 * 8 6 4 12 12 C 1.46499 * 120.00076 * 264.27206 * 3 2 1 13 13 H 1.09001 * 109.47253 * 183.53402 * 12 3 2 14 14 C 1.53005 * 109.46762 * 63.53640 * 12 3 2 15 15 C 1.53001 * 109.47143 * 303.53612 * 12 3 2 16 16 N 1.46493 * 109.47349 * 304.99887 * 15 12 3 17 17 C 1.34775 * 120.00159 * 179.97438 * 16 15 12 18 18 O 1.21576 * 119.99542 * 359.97438 * 17 16 15 19 19 C 1.47707 * 120.00393 * 180.02562 * 17 16 15 20 20 C 1.41493 * 126.52183 * 179.71497 * 19 17 16 21 21 C 1.35374 * 105.50766 * 179.84076 * 20 19 17 22 22 N 1.35035 * 107.22218 * 0.41686 * 21 20 19 23 23 C 1.46494 * 124.88401 * 179.72688 * 22 21 20 24 24 C 1.52995 * 109.47520 * 124.97087 * 23 22 21 25 25 F 1.39907 * 109.47204 * 64.99884 * 24 23 22 26 26 F 1.39905 * 109.47466 * 184.99827 * 24 23 22 27 27 N 1.28474 * 110.23272 * 359.72038 * 22 21 20 28 28 H 1.09001 * 109.47437 * 59.99994 * 1 2 3 29 29 H 1.09003 * 109.46892 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47193 * 299.99407 * 1 2 3 31 31 H 1.08994 * 109.47481 * 240.00207 * 2 1 3 32 32 H 1.09001 * 109.47437 * 120.00006 * 2 1 3 33 33 H 0.97004 * 119.99360 * 179.97438 * 7 6 4 34 34 H 1.09004 * 109.46786 * 179.97438 * 14 12 3 35 35 H 1.09001 * 109.47042 * 299.99891 * 14 12 3 36 36 H 1.09004 * 109.46864 * 60.00124 * 14 12 3 37 37 H 1.09007 * 109.46557 * 65.00348 * 15 12 3 38 38 H 1.09001 * 109.46779 * 184.99254 * 15 12 3 39 39 H 0.96999 * 119.99918 * 0.02562 * 16 15 12 40 40 H 1.07997 * 127.24952 * 359.97438 * 20 19 17 41 41 H 1.07993 * 126.38608 * 180.13620 * 21 20 19 42 42 H 1.09001 * 109.47261 * 244.97230 * 23 22 21 43 43 H 1.09000 * 109.47480 * 4.97091 * 23 22 21 44 44 H 1.09006 * 109.47221 * 305.00336 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1349 2.0662 1.1801 5 1 2.3291 1.5313 2.0979 6 6 1.9977 3.4475 1.1973 7 7 1.4072 4.0627 0.1947 8 14 2.6514 4.4329 2.6432 9 1 4.0593 4.8248 2.3793 10 1 1.8240 5.6526 2.8255 11 1 2.5905 3.6050 3.8745 12 6 2.3818 2.0297 -1.2624 13 1 2.7791 3.0241 -1.0589 14 6 1.1415 2.1481 -2.1505 15 6 3.4438 1.1928 -1.9783 16 7 4.5828 0.9789 -1.0823 17 6 5.6450 0.2632 -1.5017 18 8 5.6576 -0.2054 -2.6235 19 6 6.7933 0.0470 -0.5981 20 6 7.9699 -0.6822 -0.8913 21 6 8.7311 -0.6053 0.2256 22 7 8.0400 0.1197 1.1312 23 6 8.5068 0.4361 2.4833 24 6 8.4752 1.9514 2.6923 25 9 7.1514 2.4014 2.6430 26 9 9.0271 2.2618 3.9398 27 7 6.9143 0.4921 0.6366 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.3111 5.0279 0.2070 34 1 1.4119 2.6310 -3.0896 35 1 0.7441 1.1537 -2.3540 36 1 0.3849 2.7444 -1.6404 37 1 3.0178 0.2300 -2.2609 38 1 3.7785 1.7184 -2.8726 39 1 4.5723 1.3519 -0.1870 40 1 8.2111 -1.1909 -1.8129 41 1 9.7068 -1.0459 0.3674 42 1 7.8568 -0.0451 3.2140 43 1 9.5268 0.0732 2.6098 44 1 9.0539 2.4386 1.9075 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153930095.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:39 Heat of formation + Delta-G solvation = -33.801441 kcal Electronic energy + Delta-G solvation = -29571.789870 eV Core-core repulsion = 25197.815579 eV Total energy + Delta-G solvation = -4373.974291 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.21426 -47.18057 -42.70153 -38.91008 -36.81426 -34.31703 -33.68077 -31.78793 -31.06581 -30.53339 -29.30598 -28.24479 -25.89256 -24.22209 -23.77266 -22.25329 -21.53714 -21.52337 -19.56556 -19.19457 -18.32457 -17.81595 -17.28531 -17.13469 -16.65886 -16.08177 -15.45790 -15.19061 -14.73872 -14.52778 -14.24419 -13.94321 -13.83652 -13.70209 -13.51990 -13.46317 -13.22470 -12.94493 -12.63967 -12.56368 -12.30389 -11.83228 -11.55440 -11.47937 -11.36140 -11.23235 -10.95590 -10.82595 -10.73041 -10.42893 -10.20744 -9.83787 -9.63983 -9.51468 -9.42844 -9.34505 -9.17416 -8.44553 -8.31349 -6.66230 -5.78696 -3.21453 1.61885 2.04758 2.11935 3.24030 3.41840 3.48732 3.51310 3.75632 3.77581 3.82580 3.86733 4.27763 4.52592 4.57452 4.70655 4.84007 4.91701 5.32391 5.37907 5.46132 5.61731 5.72807 5.97119 6.16987 6.21398 6.33675 6.41410 6.50625 6.54825 6.56553 6.62605 6.76727 6.81000 6.84491 7.03509 7.12862 7.33254 7.59052 7.67903 7.78610 7.87243 8.27719 8.49036 8.76705 9.24717 9.87073 10.40931 11.28520 Molecular weight = 330.16amu Principal moments of inertia in cm(-1) A = 0.009971 B = 0.004989 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2807.519926 B = 5611.041028 C = 7612.658199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.142 3.858 3 N -0.582 5.582 4 C -0.253 4.253 5 H 0.065 0.935 6 C 0.008 3.992 7 N -0.895 5.895 8 Si 0.895 3.105 9 H -0.285 1.285 10 H -0.294 1.294 11 H -0.280 1.280 12 C 0.177 3.823 13 H 0.103 0.897 14 C -0.142 4.142 15 C 0.100 3.900 16 N -0.686 5.686 17 C 0.591 3.409 18 O -0.553 6.553 19 C 0.000 4.000 20 C -0.176 4.176 21 C -0.023 4.023 22 N -0.296 5.296 23 C 0.076 3.924 24 C 0.256 3.744 25 F -0.176 7.176 26 F -0.197 7.197 27 N -0.242 5.242 28 H 0.050 0.950 29 H 0.027 0.973 30 H 0.052 0.948 31 H 0.037 0.963 32 H 0.035 0.965 33 H 0.253 0.747 34 H 0.029 0.971 35 H 0.029 0.971 36 H 0.080 0.920 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.418 0.582 40 H 0.164 0.836 41 H 0.183 0.817 42 H 0.118 0.882 43 H 0.133 0.867 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.144 -7.443 2.110 17.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.016 3.984 3 N -0.304 5.304 4 C -0.382 4.382 5 H 0.083 0.917 6 C -0.191 4.191 7 N -0.538 5.538 8 Si 0.725 3.275 9 H -0.212 1.212 10 H -0.220 1.220 11 H -0.206 1.206 12 C 0.069 3.931 13 H 0.121 0.879 14 C -0.202 4.202 15 C -0.026 4.026 16 N -0.336 5.336 17 C 0.375 3.625 18 O -0.431 6.431 19 C -0.162 4.162 20 C -0.204 4.204 21 C -0.163 4.163 22 N -0.084 5.084 23 C -0.046 4.046 24 C 0.201 3.799 25 F -0.157 7.157 26 F -0.179 7.179 27 N -0.076 5.076 28 H 0.069 0.931 29 H 0.046 0.954 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.099 0.901 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.256 0.744 40 H 0.181 0.819 41 H 0.200 0.800 42 H 0.136 0.864 43 H 0.151 0.849 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 15.549 -6.920 2.286 17.172 hybrid contribution 0.625 0.320 0.779 1.049 sum 16.174 -6.601 3.066 17.736 Atomic orbital electron populations 1.22394 0.99814 0.98283 1.02082 1.20781 0.91873 0.87614 0.98103 1.43989 1.73722 1.09709 1.02960 1.19143 1.42564 0.89251 0.87260 0.91683 1.24993 0.98922 0.97802 0.97388 1.70017 1.43077 1.08440 1.32313 0.86405 0.78747 0.79700 0.82638 1.21234 1.22047 1.20557 1.20528 0.90882 0.96699 0.84970 0.87900 1.22120 1.00556 0.99517 0.97988 1.22193 0.87065 1.00633 0.92660 1.45873 1.16661 1.51739 1.19345 1.16923 0.81175 0.79147 0.85287 1.90742 1.80844 1.51824 1.19663 1.22268 0.98178 1.03608 0.92186 1.21813 0.93825 1.04775 1.00009 1.22858 1.00759 1.02523 0.90206 1.45148 1.12580 1.38848 1.11870 1.22931 1.04252 0.95775 0.81668 1.21927 0.80045 0.93799 0.84126 1.93180 1.35902 1.90216 1.96394 1.93024 1.85447 1.93936 1.45448 1.73854 1.02919 1.20023 1.10816 0.93135 0.95423 0.92929 0.94448 0.94658 0.93728 0.95168 0.95171 0.90081 0.92651 0.92519 0.74393 0.81886 0.80019 0.86419 0.84922 0.86878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.31 10.02 37.15 0.37 -2.94 16 2 C 0.14 2.99 5.73 -4.04 -0.02 2.97 16 3 N -0.58 -13.55 1.84 -165.66 -0.30 -13.86 16 4 C -0.25 -6.54 9.50 -15.06 -0.14 -6.68 16 5 H 0.07 1.72 7.90 -52.49 -0.41 1.30 16 6 C 0.01 0.21 4.84 -17.43 -0.08 0.13 16 7 N -0.89 -24.35 10.24 55.49 0.57 -23.78 16 8 Si 0.89 21.52 29.59 -169.99 -5.03 16.49 16 9 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 10 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 C 0.18 3.93 1.93 -67.93 -0.13 3.80 16 13 H 0.10 2.61 5.93 -51.93 -0.31 2.30 16 14 C -0.14 -3.01 8.25 37.16 0.31 -2.70 16 15 C 0.10 2.01 4.85 -4.04 -0.02 1.99 16 16 N -0.69 -13.71 5.38 -61.29 -0.33 -14.04 16 17 C 0.59 11.43 7.82 -12.39 -0.10 11.33 16 18 O -0.55 -11.74 16.93 5.30 0.09 -11.65 16 19 C 0.00 -0.01 7.13 -82.77 -0.59 -0.60 16 20 C -0.18 -2.24 10.81 -39.36 -0.43 -2.67 16 21 C -0.02 -0.21 11.40 -17.16 -0.20 -0.40 16 22 N -0.30 -3.27 3.41 -61.34 -0.21 -3.48 16 23 C 0.08 0.56 6.63 -4.05 -0.03 0.53 16 24 C 0.26 2.42 5.48 37.16 0.20 2.62 16 25 F -0.18 -2.65 16.49 2.25 0.04 -2.62 16 26 F -0.20 -1.92 17.34 2.25 0.04 -1.88 16 27 N -0.24 -3.78 10.69 33.42 0.36 -3.43 16 28 H 0.05 1.02 6.03 -51.93 -0.31 0.71 16 29 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.04 0.75 6.35 -51.93 -0.33 0.42 16 32 H 0.04 0.74 8.09 -51.93 -0.42 0.32 16 33 H 0.25 6.79 8.31 -40.82 -0.34 6.46 16 34 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.03 0.59 6.50 -51.93 -0.34 0.25 16 36 H 0.08 1.94 7.21 -51.93 -0.37 1.57 16 37 H 0.06 1.12 6.76 -51.92 -0.35 0.77 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.42 8.87 7.80 -40.82 -0.32 8.55 16 40 H 0.16 1.86 8.06 -52.49 -0.42 1.44 16 41 H 0.18 0.81 8.06 -52.49 -0.42 0.39 16 42 H 0.12 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.13 0.35 8.04 -51.93 -0.42 -0.07 16 44 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 371.52 15.07 5.60 5.60 Total: -1.00 -31.92 371.52 -6.14 -38.06 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -6.10 Total: 7.21 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: -0.85 Total: 7.38 kcal Atomic # 7 Polarization: -58.67 SS G_CDS: 0.08 Total: -58.59 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.09 Total: -11.65 kcal Atomic # 9 Polarization: -4.58 SS G_CDS: 0.08 Total: -4.50 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.92 -6.14 -38.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153930095.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.262 kcal (2) G-P(sol) polarization free energy of solvation -31.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds