Wall clock time and date at job start Tue Mar 31 2020 17:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46508 * 109.46860 * 2 1 4 4 C 1.36940 * 119.99607 * 84.27419 * 3 2 1 5 5 H 1.07993 * 119.99934 * 28.84568 * 4 3 2 6 6 C 1.38813 * 119.99582 * 209.11731 * 4 3 2 7 7 N 1.31618 * 119.99904 * 18.61774 * 6 4 3 8 8 Si 1.86797 * 119.99828 * 198.62283 * 6 4 3 9 9 H 1.48503 * 109.47417 * 89.99941 * 8 6 4 10 10 H 1.48502 * 109.46999 * 209.99801 * 8 6 4 11 11 H 1.48501 * 109.47018 * 329.99643 * 8 6 4 12 12 C 1.46499 * 120.00076 * 264.27206 * 3 2 1 13 13 H 1.09001 * 109.47253 * 183.53402 * 12 3 2 14 14 C 1.53005 * 109.46762 * 63.53640 * 12 3 2 15 15 C 1.53001 * 109.47143 * 303.53612 * 12 3 2 16 16 N 1.46493 * 109.47349 * 304.99887 * 15 12 3 17 17 C 1.34775 * 120.00159 * 179.97438 * 16 15 12 18 18 O 1.21576 * 119.99542 * 359.97438 * 17 16 15 19 19 C 1.47707 * 120.00393 * 180.02562 * 17 16 15 20 20 C 1.41493 * 126.52183 * 179.71497 * 19 17 16 21 21 C 1.35374 * 105.50766 * 179.84076 * 20 19 17 22 22 N 1.35035 * 107.22218 * 0.41686 * 21 20 19 23 23 C 1.46494 * 124.88401 * 179.72688 * 22 21 20 24 24 C 1.52995 * 109.47520 * 124.97087 * 23 22 21 25 25 F 1.39907 * 109.47204 * 64.99884 * 24 23 22 26 26 F 1.39905 * 109.47466 * 184.99827 * 24 23 22 27 27 N 1.28474 * 110.23272 * 359.72038 * 22 21 20 28 28 H 1.09001 * 109.47437 * 59.99994 * 1 2 3 29 29 H 1.09003 * 109.46892 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47193 * 299.99407 * 1 2 3 31 31 H 1.08994 * 109.47481 * 240.00207 * 2 1 3 32 32 H 1.09001 * 109.47437 * 120.00006 * 2 1 3 33 33 H 0.97004 * 119.99360 * 179.97438 * 7 6 4 34 34 H 1.09004 * 109.46786 * 179.97438 * 14 12 3 35 35 H 1.09001 * 109.47042 * 299.99891 * 14 12 3 36 36 H 1.09004 * 109.46864 * 60.00124 * 14 12 3 37 37 H 1.09007 * 109.46557 * 65.00348 * 15 12 3 38 38 H 1.09001 * 109.46779 * 184.99254 * 15 12 3 39 39 H 0.96999 * 119.99918 * 0.02562 * 16 15 12 40 40 H 1.07997 * 127.24952 * 359.97438 * 20 19 17 41 41 H 1.07993 * 126.38608 * 180.13620 * 21 20 19 42 42 H 1.09001 * 109.47261 * 244.97230 * 23 22 21 43 43 H 1.09000 * 109.47480 * 4.97091 * 23 22 21 44 44 H 1.09006 * 109.47221 * 305.00336 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1349 2.0662 1.1801 5 1 2.3291 1.5313 2.0979 6 6 1.9977 3.4475 1.1973 7 7 1.4072 4.0627 0.1947 8 14 2.6514 4.4329 2.6432 9 1 4.0593 4.8248 2.3793 10 1 1.8240 5.6526 2.8255 11 1 2.5905 3.6050 3.8745 12 6 2.3818 2.0297 -1.2624 13 1 2.7791 3.0241 -1.0589 14 6 1.1415 2.1481 -2.1505 15 6 3.4438 1.1928 -1.9783 16 7 4.5828 0.9789 -1.0823 17 6 5.6450 0.2632 -1.5017 18 8 5.6576 -0.2054 -2.6235 19 6 6.7933 0.0470 -0.5981 20 6 7.9699 -0.6822 -0.8913 21 6 8.7311 -0.6053 0.2256 22 7 8.0400 0.1197 1.1312 23 6 8.5068 0.4361 2.4833 24 6 8.4752 1.9514 2.6923 25 9 7.1514 2.4014 2.6430 26 9 9.0271 2.2618 3.9398 27 7 6.9143 0.4921 0.6366 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.3111 5.0279 0.2070 34 1 1.4119 2.6310 -3.0896 35 1 0.7441 1.1537 -2.3540 36 1 0.3849 2.7444 -1.6404 37 1 3.0178 0.2300 -2.2609 38 1 3.7785 1.7184 -2.8726 39 1 4.5723 1.3519 -0.1870 40 1 8.2111 -1.1909 -1.8129 41 1 9.7068 -1.0459 0.3674 42 1 7.8568 -0.0451 3.2140 43 1 9.5268 0.0732 2.6098 44 1 9.0539 2.4386 1.9075 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153930095.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:38 Heat of formation + Delta-G solvation = -54.342884 kcal Electronic energy + Delta-G solvation = -29572.680614 eV Core-core repulsion = 25197.815579 eV Total energy + Delta-G solvation = -4374.865034 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.03510 -48.05734 -43.63958 -40.44739 -38.57870 -35.35267 -35.12221 -33.73470 -32.55159 -31.64345 -30.25364 -30.08647 -27.35660 -25.87941 -25.06175 -23.39166 -23.19090 -22.42335 -21.09802 -20.73257 -19.20872 -18.86774 -18.58974 -18.12733 -17.95857 -17.09668 -16.96643 -16.55279 -16.44688 -16.07508 -15.51891 -15.38710 -15.03597 -14.93262 -14.62975 -14.40291 -14.37439 -14.11986 -14.03741 -13.96251 -13.63994 -13.28901 -13.26380 -13.07772 -13.00019 -12.83771 -12.64597 -12.26562 -12.20602 -12.10964 -11.81745 -11.73519 -11.29231 -11.26156 -11.16462 -10.44567 -10.35350 -10.10813 -9.87045 -8.59705 -7.82123 -5.24771 0.52179 1.19091 1.30309 1.45652 1.50965 1.55188 2.34738 2.42372 2.54253 2.60567 3.16772 3.25389 3.32988 3.55665 3.64819 3.75450 3.98327 4.06422 4.24232 4.29538 4.39319 4.45901 4.52823 4.71571 4.76307 4.78993 4.84560 4.90231 4.90888 5.04151 5.10126 5.17615 5.33133 5.33354 5.50953 5.60213 5.74317 5.77053 5.82565 5.93515 6.47823 6.57740 6.91513 7.22712 7.26084 7.94014 8.42657 9.22651 Molecular weight = 330.16amu Principal moments of inertia in cm(-1) A = 0.009971 B = 0.004989 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2807.519926 B = 5611.041028 C = 7612.658199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.142 3.858 3 N -0.589 5.589 4 C -0.251 4.251 5 H 0.057 0.943 6 C -0.031 4.031 7 N -0.912 5.912 8 Si 0.944 3.056 9 H -0.292 1.292 10 H -0.298 1.298 11 H -0.277 1.277 12 C 0.182 3.818 13 H 0.070 0.930 14 C -0.131 4.131 15 C 0.111 3.889 16 N -0.692 5.692 17 C 0.590 3.410 18 O -0.579 6.579 19 C -0.037 4.037 20 C -0.198 4.198 21 C 0.017 3.983 22 N -0.288 5.288 23 C 0.076 3.924 24 C 0.246 3.754 25 F -0.215 7.215 26 F -0.199 7.199 27 N -0.279 5.279 28 H 0.044 0.956 29 H 0.059 0.941 30 H 0.029 0.971 31 H 0.049 0.951 32 H 0.033 0.967 33 H 0.247 0.753 34 H 0.046 0.954 35 H 0.043 0.957 36 H 0.050 0.950 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.411 0.589 40 H 0.170 0.830 41 H 0.243 0.757 42 H 0.118 0.882 43 H 0.193 0.807 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.703 -9.204 2.757 21.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.017 3.983 3 N -0.311 5.311 4 C -0.381 4.381 5 H 0.074 0.926 6 C -0.228 4.228 7 N -0.558 5.558 8 Si 0.775 3.225 9 H -0.219 1.219 10 H -0.225 1.225 11 H -0.202 1.202 12 C 0.075 3.925 13 H 0.088 0.912 14 C -0.190 4.190 15 C -0.014 4.014 16 N -0.341 5.341 17 C 0.375 3.625 18 O -0.459 6.459 19 C -0.197 4.197 20 C -0.226 4.226 21 C -0.124 4.124 22 N -0.077 5.077 23 C -0.045 4.045 24 C 0.192 3.808 25 F -0.197 7.197 26 F -0.180 7.180 27 N -0.115 5.115 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.048 0.952 31 H 0.067 0.933 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.248 0.752 40 H 0.188 0.812 41 H 0.259 0.741 42 H 0.136 0.864 43 H 0.210 0.790 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 18.103 -8.698 2.941 20.298 hybrid contribution -0.052 0.810 0.650 1.040 sum 18.051 -7.887 3.591 20.024 Atomic orbital electron populations 1.22247 0.98682 0.99905 1.00612 1.20848 0.92669 0.86270 0.98558 1.44059 1.74119 1.10368 1.02589 1.19217 1.41529 0.89502 0.87889 0.92575 1.25455 0.99695 0.98527 0.99142 1.70131 1.44184 1.08022 1.33424 0.85624 0.77615 0.78432 0.80854 1.21894 1.22473 1.20249 1.20375 0.91745 0.95381 0.84991 0.91165 1.21947 0.99151 0.99867 0.98051 1.21966 0.86790 1.00173 0.92492 1.45886 1.17090 1.52302 1.18843 1.17354 0.81570 0.78061 0.85475 1.90702 1.81542 1.52784 1.20890 1.22000 0.98605 1.06300 0.92760 1.22059 0.93241 1.05404 1.01905 1.23643 1.01520 0.99467 0.87787 1.45513 1.11374 1.37752 1.13110 1.23331 1.07432 0.94038 0.79682 1.22372 0.78278 0.95648 0.84496 1.93101 1.39060 1.90930 1.96589 1.93015 1.85200 1.94112 1.45700 1.73787 1.05477 1.21375 1.10814 0.93686 0.92212 0.95207 0.93268 0.94856 0.94339 0.93504 0.93773 0.93062 0.92445 0.92165 0.75221 0.81222 0.74070 0.86384 0.78964 0.84792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.04 10.02 71.98 0.72 -5.32 16 2 C 0.14 5.91 5.73 86.38 0.49 6.41 16 3 N -0.59 -27.88 1.84 -678.03 -1.25 -29.12 16 4 C -0.25 -13.27 9.50 84.03 0.80 -12.47 16 5 H 0.06 3.03 7.90 -2.91 -0.02 3.01 16 6 C -0.03 -1.69 4.84 84.86 0.41 -1.28 16 7 N -0.91 -51.04 10.24 21.65 0.22 -50.82 16 8 Si 0.94 45.38 29.59 68.60 2.03 47.41 16 9 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 10 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 11 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 12 C 0.18 8.27 1.93 44.99 0.09 8.35 16 13 H 0.07 3.69 5.93 -2.39 -0.01 3.68 16 14 C -0.13 -5.55 8.25 71.98 0.59 -4.96 16 15 C 0.11 4.54 4.85 86.38 0.42 4.96 16 16 N -0.69 -28.41 5.38 -466.10 -2.51 -30.92 16 17 C 0.59 23.23 7.82 86.75 0.68 23.91 16 18 O -0.58 -24.97 16.93 -3.95 -0.07 -25.04 16 19 C -0.04 -1.20 7.13 42.45 0.30 -0.90 16 20 C -0.20 -4.62 10.81 22.41 0.24 -4.38 16 21 C 0.02 0.24 11.40 83.54 0.95 1.19 16 22 N -0.29 -5.48 3.41 -347.97 -1.19 -6.66 16 23 C 0.08 0.81 6.63 86.38 0.57 1.39 16 24 C 0.25 4.15 5.48 71.98 0.39 4.54 16 25 F -0.22 -6.51 16.49 44.97 0.74 -5.77 16 26 F -0.20 -3.46 17.34 44.97 0.78 -2.68 16 27 N -0.28 -8.51 10.69 -48.18 -0.51 -9.02 16 28 H 0.04 1.78 6.03 -2.39 -0.01 1.77 16 29 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.05 1.93 6.35 -2.39 -0.02 1.91 16 32 H 0.03 1.39 8.09 -2.39 -0.02 1.37 16 33 H 0.25 13.68 8.31 -92.71 -0.77 12.91 16 34 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 35 H 0.04 1.71 6.50 -2.39 -0.02 1.69 16 36 H 0.05 2.49 7.21 -2.38 -0.02 2.47 16 37 H 0.06 2.31 6.76 -2.38 -0.02 2.30 16 38 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 39 H 0.41 18.12 7.80 -92.71 -0.72 17.40 16 40 H 0.17 3.58 8.06 -2.91 -0.02 3.55 16 41 H 0.24 0.32 8.06 -2.91 -0.02 0.30 16 42 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.19 -0.25 8.04 -2.39 -0.02 -0.27 16 44 H 0.13 1.65 8.14 -2.38 -0.02 1.63 16 Total: -1.00 -73.59 371.52 5.23 -68.36 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: 0.31 Total: 22.82 kcal Atomic # 6 Polarization: 14.78 SS G_CDS: 6.67 Total: 21.45 kcal Atomic # 7 Polarization: -121.31 SS G_CDS: -5.24 Total: -126.54 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -0.07 Total: -25.04 kcal Atomic # 9 Polarization: -9.98 SS G_CDS: 1.52 Total: -8.46 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -73.59 5.23 -68.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153930095.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.022 kcal (2) G-P(sol) polarization free energy of solvation -73.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds