Wall clock time and date at job start Tue Mar 31 2020 17:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47590 * 2 1 4 4 C 1.36936 * 119.99860 * 275.73706 * 3 2 1 5 5 H 1.08000 * 120.00535 * 33.26353 * 4 3 2 6 6 C 1.38816 * 119.99487 * 213.27069 * 4 3 2 7 7 N 1.31621 * 120.00284 * 17.26716 * 6 4 3 8 8 Si 1.86805 * 119.99481 * 197.26922 * 6 4 3 9 9 H 1.48499 * 109.47145 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47076 * 119.99898 * 8 6 4 11 11 H 1.48501 * 109.46880 * 239.99560 * 8 6 4 12 12 C 1.46501 * 119.99950 * 95.73391 * 3 2 1 13 13 H 1.08992 * 109.46943 * 180.08807 * 12 3 2 14 14 C 1.53002 * 109.47101 * 60.08441 * 12 3 2 15 15 C 1.53002 * 109.47077 * 300.08568 * 12 3 2 16 16 N 1.46501 * 109.46834 * 305.00341 * 15 12 3 17 17 C 1.34786 * 119.99776 * 180.02562 * 16 15 12 18 18 O 1.21602 * 119.99814 * 359.97438 * 17 16 15 19 19 C 1.47423 * 120.00105 * 179.97438 * 17 16 15 20 20 C 1.41288 * 126.41087 * 359.68667 * 19 17 16 21 21 N 1.30461 * 108.02091 * 179.88114 * 20 19 17 22 22 N 1.39938 * 108.89358 * 0.38103 * 21 20 19 23 23 C 1.46495 * 125.75215 * 179.77149 * 22 21 20 24 24 C 1.34260 * 108.49347 * 359.75596 * 22 21 20 25 25 C 1.50696 * 126.29062 * 179.97438 * 24 22 21 26 26 F 1.39895 * 109.47367 * 30.02351 * 25 24 22 27 27 F 1.39898 * 109.47179 * 150.02737 * 25 24 22 28 28 H 1.08998 * 109.46921 * 300.00454 * 1 2 3 29 29 H 1.09004 * 109.47111 * 59.99481 * 1 2 3 30 30 H 1.09000 * 109.47490 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46546 * 239.99647 * 2 1 3 32 32 H 1.09004 * 109.47111 * 120.00519 * 2 1 3 33 33 H 0.96998 * 119.99765 * 179.97438 * 7 6 4 34 34 H 1.09001 * 109.47057 * 60.00140 * 14 12 3 35 35 H 1.08999 * 109.47286 * 180.02562 * 14 12 3 36 36 H 1.09004 * 109.47269 * 300.00315 * 14 12 3 37 37 H 1.09001 * 109.47409 * 184.99831 * 15 12 3 38 38 H 1.09005 * 109.47174 * 64.99907 * 15 12 3 39 39 H 0.96998 * 120.00417 * 359.97438 * 16 15 12 40 40 H 1.07999 * 125.99312 * 0.02562 * 20 19 17 41 41 H 1.08994 * 109.47457 * 269.98094 * 23 22 21 42 42 H 1.08999 * 109.47021 * 29.98034 * 23 22 21 43 43 H 1.08999 * 109.46917 * 149.97779 * 23 22 21 44 44 H 1.09001 * 109.46970 * 270.02065 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1349 2.0662 -1.1800 5 1 1.4370 1.8810 -1.9831 6 6 3.1503 2.9985 -1.3438 7 7 4.1873 2.9915 -0.5334 8 14 3.0446 4.2630 -2.7147 9 1 1.7888 4.0591 -3.4806 10 1 3.0525 5.6283 -2.1305 11 1 4.2089 4.1067 -3.6231 12 6 2.3821 2.0295 1.2624 13 1 2.7192 3.0469 1.0644 14 6 3.5078 1.2410 1.9348 15 6 1.1632 2.0668 2.1863 16 7 0.0468 2.7174 1.4958 17 6 -1.1385 2.8641 2.1205 18 8 -1.2813 2.4559 3.2570 19 6 -2.2617 3.5193 1.4259 20 6 -2.2444 4.0464 0.1151 21 7 -3.4259 4.5384 -0.1377 22 7 -4.2409 4.3601 0.9859 23 6 -5.6390 4.7810 1.1046 24 6 -3.5254 3.7380 1.9365 25 6 -4.0124 3.3502 3.3089 26 9 -5.3853 3.0863 3.2593 27 9 -3.3327 2.2055 3.7387 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8932 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 4.8969 3.6428 -0.6482 34 1 4.3762 1.2145 1.2766 35 1 3.7781 1.7231 2.8743 36 1 3.1707 0.2235 2.1328 37 1 1.4082 2.6268 3.0888 38 1 0.8802 1.0492 2.4558 39 1 0.1609 3.0433 0.5893 40 1 -1.4015 4.0408 -0.5602 41 1 -5.6807 5.7958 1.5002 42 1 -6.1111 4.7543 0.1225 43 1 -6.1656 4.1061 1.7793 44 1 -3.8244 4.1673 4.0054 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156311043.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:05 Heat of formation + Delta-G solvation = -29.406067 kcal Electronic energy + Delta-G solvation = -30136.977794 eV Core-core repulsion = 25763.194101 eV Total energy + Delta-G solvation = -4373.783693 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.161 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -49.18893 -47.09305 -41.50856 -38.82269 -36.79773 -33.86540 -33.38123 -31.85463 -31.49534 -30.96026 -28.21837 -27.68495 -26.26340 -25.16459 -23.91300 -22.38393 -21.67139 -20.80563 -19.68381 -19.22270 -18.06645 -17.75681 -17.14477 -16.84853 -16.23168 -15.79038 -15.50289 -14.92680 -14.79077 -14.66633 -14.44489 -14.02644 -13.79724 -13.71639 -13.49657 -13.09441 -12.89776 -12.81172 -12.64484 -12.46530 -12.26938 -12.01291 -11.78550 -11.63659 -11.47024 -11.04633 -11.00859 -10.92421 -10.80229 -10.61823 -10.26032 -10.04937 -9.75730 -9.60497 -9.40323 -9.35336 -8.85795 -8.50718 -8.26099 -6.65070 -5.87468 -3.35812 1.14779 2.01831 2.16345 3.30692 3.31126 3.41268 3.41450 3.73749 3.77651 3.87895 4.26108 4.42467 4.55607 4.64780 4.83459 4.95724 5.12434 5.15435 5.27759 5.35368 5.42053 5.71073 5.95847 6.10847 6.22876 6.27983 6.32400 6.42990 6.45119 6.53581 6.59434 6.66627 6.72973 6.87134 6.95706 7.13726 7.21582 7.31677 7.51247 7.60337 7.78655 8.22999 8.44425 8.81796 9.17442 9.79031 10.36511 11.19047 Molecular weight = 330.16amu Principal moments of inertia in cm(-1) A = 0.014498 B = 0.004179 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.897543 B = 6697.957954 C = 7828.070539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.141 3.859 3 N -0.583 5.583 4 C -0.262 4.262 5 H 0.064 0.936 6 C 0.012 3.988 7 N -0.890 5.890 8 Si 0.893 3.107 9 H -0.276 1.276 10 H -0.289 1.289 11 H -0.291 1.291 12 C 0.176 3.824 13 H 0.100 0.900 14 C -0.144 4.144 15 C 0.105 3.895 16 N -0.694 5.694 17 C 0.575 3.425 18 O -0.547 6.547 19 C -0.237 4.237 20 C 0.085 3.915 21 N -0.280 5.280 22 N -0.344 5.344 23 C 0.079 3.921 24 C 0.052 3.948 25 C 0.343 3.657 26 F -0.203 7.203 27 F -0.148 7.148 28 H 0.053 0.947 29 H 0.046 0.954 30 H 0.031 0.969 31 H 0.039 0.961 32 H 0.036 0.964 33 H 0.254 0.746 34 H 0.078 0.922 35 H 0.032 0.968 36 H 0.029 0.971 37 H 0.053 0.947 38 H 0.054 0.946 39 H 0.409 0.591 40 H 0.201 0.799 41 H 0.081 0.919 42 H 0.096 0.904 43 H 0.106 0.894 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.568 3.285 6.110 17.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.015 3.985 3 N -0.304 5.304 4 C -0.391 4.391 5 H 0.082 0.918 6 C -0.188 4.188 7 N -0.533 5.533 8 Si 0.723 3.277 9 H -0.201 1.201 10 H -0.215 1.215 11 H -0.218 1.218 12 C 0.069 3.931 13 H 0.117 0.883 14 C -0.203 4.203 15 C -0.021 4.021 16 N -0.344 5.344 17 C 0.360 3.640 18 O -0.426 6.426 19 C -0.252 4.252 20 C -0.101 4.101 21 N -0.100 5.100 22 N -0.124 5.124 23 C -0.061 4.061 24 C -0.081 4.081 25 C 0.287 3.713 26 F -0.184 7.184 27 F -0.129 7.129 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.051 0.949 36 H 0.049 0.951 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.246 0.754 40 H 0.218 0.782 41 H 0.099 0.901 42 H 0.114 0.886 43 H 0.124 0.876 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -16.382 3.690 6.033 17.843 hybrid contribution 0.513 0.385 -0.758 0.993 sum -15.869 4.076 5.275 17.213 Atomic orbital electron populations 1.22448 0.99939 0.98981 1.01625 1.20750 0.91687 0.87417 0.98666 1.43893 1.75949 1.08306 1.02274 1.19131 1.08552 1.18084 0.93376 0.91796 1.25146 0.94549 1.01369 0.97738 1.70015 1.07853 1.35888 1.39499 0.86384 0.77688 0.81668 0.81978 1.20121 1.21532 1.21759 1.20499 0.88927 0.99495 0.84199 0.88252 1.22021 1.01123 0.97985 0.99217 1.22164 0.87858 0.96319 0.95713 1.45735 1.10575 1.59112 1.18962 1.17188 0.81980 0.79128 0.85680 1.90812 1.82880 1.51006 1.17909 1.20292 0.94858 1.13325 0.96769 1.24292 0.95884 0.94803 0.95103 1.77278 1.02928 1.24145 1.05630 1.48267 1.11362 1.43482 1.09292 1.22358 0.76151 1.01995 1.05599 1.21895 0.93257 0.99841 0.93110 1.19668 0.72472 0.88353 0.90784 1.92903 1.33118 1.95318 1.97098 1.93253 1.78275 1.51570 1.89802 0.92793 0.93521 0.94975 0.94210 0.94523 0.93635 0.90338 0.94855 0.95149 0.92877 0.92725 0.75442 0.78204 0.90078 0.88567 0.87624 0.85151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.12 9.87 37.16 0.37 -2.75 16 2 C 0.14 2.84 5.67 -4.04 -0.02 2.81 16 3 N -0.58 -12.83 1.85 -165.66 -0.31 -13.14 16 4 C -0.26 -6.34 9.26 -15.06 -0.14 -6.48 16 5 H 0.06 1.57 7.89 -52.49 -0.41 1.15 16 6 C 0.01 0.30 4.85 -17.43 -0.08 0.22 16 7 N -0.89 -23.23 10.60 55.49 0.59 -22.64 16 8 Si 0.89 19.93 29.59 -169.99 -5.03 14.90 16 9 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 10 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 C 0.18 3.70 1.92 -67.93 -0.13 3.56 16 13 H 0.10 2.37 6.04 -51.93 -0.31 2.05 16 14 C -0.14 -2.91 9.05 37.16 0.34 -2.57 16 15 C 0.10 1.98 4.34 -4.04 -0.02 1.96 16 16 N -0.69 -12.44 3.98 -61.38 -0.24 -12.69 16 17 C 0.57 10.20 7.53 -12.52 -0.09 10.11 16 18 O -0.55 -10.80 13.18 5.28 0.07 -10.73 16 19 C -0.24 -3.68 6.09 -105.07 -0.64 -4.32 16 20 C 0.09 1.24 11.50 -16.98 -0.20 1.05 16 21 N -0.28 -4.00 12.50 30.86 0.39 -3.61 16 22 N -0.34 -4.22 3.98 -63.35 -0.25 -4.48 16 23 C 0.08 0.60 11.16 59.84 0.67 1.27 16 24 C 0.05 0.71 6.74 -81.60 -0.55 0.16 16 25 C 0.34 4.01 5.53 36.00 0.20 4.20 16 26 F -0.20 -2.11 14.54 2.25 0.03 -2.08 16 27 F -0.15 -2.33 13.52 2.25 0.03 -2.30 16 28 H 0.05 1.02 4.99 -51.93 -0.26 0.76 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.04 0.83 8.09 -51.93 -0.42 0.41 16 32 H 0.04 0.71 6.45 -51.93 -0.33 0.38 16 33 H 0.25 6.52 8.31 -40.82 -0.34 6.18 16 34 H 0.08 1.80 7.39 -51.93 -0.38 1.42 16 35 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.03 0.57 6.67 -51.93 -0.35 0.22 16 37 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.05 1.07 7.05 -51.93 -0.37 0.70 16 39 H 0.41 7.41 6.85 -40.82 -0.28 7.13 16 40 H 0.20 2.63 7.50 -52.49 -0.39 2.24 16 41 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.11 0.70 5.52 -51.93 -0.29 0.42 16 44 H 0.13 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 358.33 15.07 5.40 5.40 Total: -1.00 -29.42 358.33 -5.52 -34.94 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -5.89 Total: 7.21 kcal Atomic # 6 Polarization: 9.52 SS G_CDS: -0.30 Total: 9.22 kcal Atomic # 7 Polarization: -56.72 SS G_CDS: 0.17 Total: -56.55 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.07 Total: -10.73 kcal Atomic # 9 Polarization: -4.44 SS G_CDS: 0.06 Total: -4.38 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.03 Total: 14.90 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.42 -5.52 -34.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156311043.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.534 kcal (2) G-P(sol) polarization free energy of solvation -29.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds