Wall clock time and date at job start Tue Mar 31 2020 17:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47590 * 2 1 4 4 C 1.36936 * 119.99860 * 275.73706 * 3 2 1 5 5 H 1.08000 * 120.00535 * 33.26353 * 4 3 2 6 6 C 1.38816 * 119.99487 * 213.27069 * 4 3 2 7 7 N 1.31621 * 120.00284 * 17.26716 * 6 4 3 8 8 Si 1.86805 * 119.99481 * 197.26922 * 6 4 3 9 9 H 1.48499 * 109.47145 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47076 * 119.99898 * 8 6 4 11 11 H 1.48501 * 109.46880 * 239.99560 * 8 6 4 12 12 C 1.46501 * 119.99950 * 95.73391 * 3 2 1 13 13 H 1.08992 * 109.46943 * 180.08807 * 12 3 2 14 14 C 1.53002 * 109.47101 * 60.08441 * 12 3 2 15 15 C 1.53002 * 109.47077 * 300.08568 * 12 3 2 16 16 N 1.46501 * 109.46834 * 305.00341 * 15 12 3 17 17 C 1.34786 * 119.99776 * 180.02562 * 16 15 12 18 18 O 1.21602 * 119.99814 * 359.97438 * 17 16 15 19 19 C 1.47423 * 120.00105 * 179.97438 * 17 16 15 20 20 C 1.41288 * 126.41087 * 359.68667 * 19 17 16 21 21 N 1.30461 * 108.02091 * 179.88114 * 20 19 17 22 22 N 1.39938 * 108.89358 * 0.38103 * 21 20 19 23 23 C 1.46495 * 125.75215 * 179.77149 * 22 21 20 24 24 C 1.34260 * 108.49347 * 359.75596 * 22 21 20 25 25 C 1.50696 * 126.29062 * 179.97438 * 24 22 21 26 26 F 1.39895 * 109.47367 * 30.02351 * 25 24 22 27 27 F 1.39898 * 109.47179 * 150.02737 * 25 24 22 28 28 H 1.08998 * 109.46921 * 300.00454 * 1 2 3 29 29 H 1.09004 * 109.47111 * 59.99481 * 1 2 3 30 30 H 1.09000 * 109.47490 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46546 * 239.99647 * 2 1 3 32 32 H 1.09004 * 109.47111 * 120.00519 * 2 1 3 33 33 H 0.96998 * 119.99765 * 179.97438 * 7 6 4 34 34 H 1.09001 * 109.47057 * 60.00140 * 14 12 3 35 35 H 1.08999 * 109.47286 * 180.02562 * 14 12 3 36 36 H 1.09004 * 109.47269 * 300.00315 * 14 12 3 37 37 H 1.09001 * 109.47409 * 184.99831 * 15 12 3 38 38 H 1.09005 * 109.47174 * 64.99907 * 15 12 3 39 39 H 0.96998 * 120.00417 * 359.97438 * 16 15 12 40 40 H 1.07999 * 125.99312 * 0.02562 * 20 19 17 41 41 H 1.08994 * 109.47457 * 269.98094 * 23 22 21 42 42 H 1.08999 * 109.47021 * 29.98034 * 23 22 21 43 43 H 1.08999 * 109.46917 * 149.97779 * 23 22 21 44 44 H 1.09001 * 109.46970 * 270.02065 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1349 2.0662 -1.1800 5 1 1.4370 1.8810 -1.9831 6 6 3.1503 2.9985 -1.3438 7 7 4.1873 2.9915 -0.5334 8 14 3.0446 4.2630 -2.7147 9 1 1.7888 4.0591 -3.4806 10 1 3.0525 5.6283 -2.1305 11 1 4.2089 4.1067 -3.6231 12 6 2.3821 2.0295 1.2624 13 1 2.7192 3.0469 1.0644 14 6 3.5078 1.2410 1.9348 15 6 1.1632 2.0668 2.1863 16 7 0.0468 2.7174 1.4958 17 6 -1.1385 2.8641 2.1205 18 8 -1.2813 2.4559 3.2570 19 6 -2.2617 3.5193 1.4259 20 6 -2.2444 4.0464 0.1151 21 7 -3.4259 4.5384 -0.1377 22 7 -4.2409 4.3601 0.9859 23 6 -5.6390 4.7810 1.1046 24 6 -3.5254 3.7380 1.9365 25 6 -4.0124 3.3502 3.3089 26 9 -5.3853 3.0863 3.2593 27 9 -3.3327 2.2055 3.7387 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8932 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 4.8969 3.6428 -0.6482 34 1 4.3762 1.2145 1.2766 35 1 3.7781 1.7231 2.8743 36 1 3.1707 0.2235 2.1328 37 1 1.4082 2.6268 3.0888 38 1 0.8802 1.0492 2.4558 39 1 0.1609 3.0433 0.5893 40 1 -1.4015 4.0408 -0.5602 41 1 -5.6807 5.7958 1.5002 42 1 -6.1111 4.7543 0.1225 43 1 -6.1656 4.1061 1.7793 44 1 -3.8244 4.1673 4.0054 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156311043.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:03 Heat of formation + Delta-G solvation = -46.525171 kcal Electronic energy + Delta-G solvation = -30137.720134 eV Core-core repulsion = 25763.194101 eV Total energy + Delta-G solvation = -4374.526033 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.161 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -50.11235 -48.08062 -42.56513 -40.24561 -38.44033 -35.20658 -34.53948 -33.65325 -32.73411 -32.35372 -29.90928 -28.77877 -27.15535 -26.56173 -25.73346 -23.63076 -23.22791 -21.83496 -21.02776 -20.79630 -19.25102 -18.67711 -18.56252 -18.08580 -17.40404 -17.02747 -16.69651 -16.40131 -16.28175 -16.00339 -15.55147 -15.38402 -15.23983 -14.81597 -14.68932 -14.39611 -14.27989 -13.95395 -13.82610 -13.77344 -13.52945 -13.41631 -13.22020 -13.09570 -12.78726 -12.65910 -12.64819 -12.51687 -12.29812 -12.02876 -11.98380 -11.79936 -11.30521 -11.11105 -10.75248 -10.74419 -10.39100 -10.02188 -9.64949 -8.47524 -7.77282 -5.26823 0.08687 1.01415 1.11640 1.51188 1.57800 1.64002 2.35371 2.42171 2.52452 2.58890 3.00026 3.32007 3.37461 3.56541 3.71415 3.79935 3.93092 4.17485 4.29763 4.32324 4.39282 4.50493 4.57504 4.62809 4.66523 4.75343 4.87156 4.95116 4.98931 5.04824 5.11700 5.18925 5.27134 5.36679 5.54610 5.60326 5.66189 5.76336 5.82784 5.94330 6.26143 6.55380 6.81634 7.29488 7.42645 7.98075 8.50775 9.26781 Molecular weight = 330.16amu Principal moments of inertia in cm(-1) A = 0.014498 B = 0.004179 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.897543 B = 6697.957954 C = 7828.070539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.141 3.859 3 N -0.590 5.590 4 C -0.258 4.258 5 H 0.061 0.939 6 C -0.029 4.029 7 N -0.914 5.914 8 Si 0.947 3.053 9 H -0.267 1.267 10 H -0.292 1.292 11 H -0.302 1.302 12 C 0.183 3.817 13 H 0.071 0.929 14 C -0.135 4.135 15 C 0.119 3.881 16 N -0.695 5.695 17 C 0.577 3.423 18 O -0.569 6.569 19 C -0.266 4.266 20 C 0.083 3.917 21 N -0.295 5.295 22 N -0.334 5.334 23 C 0.068 3.932 24 C 0.059 3.941 25 C 0.343 3.657 26 F -0.194 7.194 27 F -0.173 7.173 28 H 0.046 0.954 29 H 0.039 0.961 30 H 0.051 0.949 31 H 0.030 0.970 32 H 0.044 0.956 33 H 0.247 0.753 34 H 0.047 0.953 35 H 0.049 0.951 36 H 0.041 0.959 37 H 0.056 0.944 38 H 0.051 0.949 39 H 0.408 0.592 40 H 0.205 0.795 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.117 0.883 44 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.798 3.750 6.442 19.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.015 3.985 3 N -0.312 5.312 4 C -0.388 4.388 5 H 0.079 0.921 6 C -0.227 4.227 7 N -0.558 5.558 8 Si 0.777 3.223 9 H -0.191 1.191 10 H -0.219 1.219 11 H -0.230 1.230 12 C 0.075 3.925 13 H 0.089 0.911 14 C -0.195 4.195 15 C -0.007 4.007 16 N -0.344 5.344 17 C 0.364 3.636 18 O -0.450 6.450 19 C -0.282 4.282 20 C -0.103 4.103 21 N -0.116 5.116 22 N -0.113 5.113 23 C -0.070 4.070 24 C -0.076 4.076 25 C 0.287 3.713 26 F -0.175 7.175 27 F -0.154 7.154 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.048 0.952 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.244 0.756 40 H 0.222 0.778 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.135 0.865 44 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -18.660 4.156 6.350 20.144 hybrid contribution 1.087 0.224 -0.853 1.400 sum -17.573 4.380 5.496 18.926 Atomic orbital electron populations 1.22259 0.98259 1.00035 1.00908 1.20804 0.92816 0.86337 0.98523 1.44006 1.76056 1.09097 1.02090 1.19265 1.07840 1.17820 0.93877 0.92111 1.25659 0.94520 1.02937 0.99535 1.70142 1.08377 1.36374 1.40940 0.85528 0.77310 0.79654 0.79797 1.19109 1.21903 1.23020 1.20351 0.89920 0.97934 0.84260 0.91084 1.21886 0.99618 0.98780 0.99176 1.21875 0.87311 0.96282 0.95186 1.45679 1.10638 1.59267 1.18827 1.17428 0.82138 0.78589 0.85399 1.90796 1.83249 1.52073 1.18859 1.20141 0.95185 1.15368 0.97510 1.24361 0.96288 0.94725 0.94924 1.77239 1.03045 1.24625 1.06654 1.48655 1.12433 1.41998 1.08204 1.22788 0.73690 1.03671 1.06873 1.22164 0.92760 0.98818 0.93889 1.20036 0.72471 0.88350 0.90420 1.92917 1.32269 1.95308 1.97037 1.93199 1.79056 1.53183 1.89979 0.93449 0.94181 0.93010 0.95164 0.93807 0.94322 0.93369 0.93157 0.93997 0.92574 0.93086 0.75609 0.77805 0.87500 0.87428 0.86452 0.81347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.50 9.87 71.98 0.71 -4.79 16 2 C 0.14 5.57 5.67 86.38 0.49 6.06 16 3 N -0.59 -26.01 1.85 -678.03 -1.25 -27.27 16 4 C -0.26 -12.51 9.26 84.03 0.78 -11.73 16 5 H 0.06 2.96 7.89 -2.91 -0.02 2.94 16 6 C -0.03 -1.45 4.85 84.86 0.41 -1.04 16 7 N -0.91 -48.58 10.60 21.65 0.23 -48.35 16 8 Si 0.95 41.34 29.59 68.60 2.03 43.37 16 9 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 10 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 11 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 12 C 0.18 7.69 1.92 44.99 0.09 7.77 16 13 H 0.07 3.45 6.04 -2.39 -0.01 3.43 16 14 C -0.14 -5.45 9.05 71.98 0.65 -4.80 16 15 C 0.12 4.47 4.34 86.38 0.37 4.84 16 16 N -0.69 -24.78 3.98 -466.35 -1.86 -26.64 16 17 C 0.58 20.21 7.53 86.66 0.65 20.86 16 18 O -0.57 -22.13 13.18 -4.04 -0.05 -22.18 16 19 C -0.27 -8.03 6.09 -20.15 -0.12 -8.15 16 20 C 0.08 2.34 11.50 85.65 0.99 3.32 16 21 N -0.29 -7.96 12.50 -56.27 -0.70 -8.67 16 22 N -0.33 -7.40 3.98 -354.33 -1.41 -8.81 16 23 C 0.07 0.81 11.16 127.77 1.43 2.24 16 24 C 0.06 1.48 6.74 42.14 0.28 1.77 16 25 C 0.34 7.18 5.53 71.23 0.39 7.57 16 26 F -0.19 -3.48 14.54 44.97 0.65 -2.83 16 27 F -0.17 -5.22 13.52 44.97 0.61 -4.61 16 28 H 0.05 1.74 4.99 -2.39 -0.01 1.73 16 29 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.03 1.24 8.09 -2.38 -0.02 1.22 16 32 H 0.04 1.66 6.45 -2.39 -0.02 1.65 16 33 H 0.25 13.02 8.31 -92.71 -0.77 12.25 16 34 H 0.05 2.23 7.39 -2.39 -0.02 2.22 16 35 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.04 1.55 6.67 -2.38 -0.02 1.54 16 37 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.05 1.96 7.05 -2.38 -0.02 1.94 16 39 H 0.41 14.80 6.85 -92.71 -0.64 14.17 16 40 H 0.21 5.33 7.50 -2.91 -0.02 5.31 16 41 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.12 1.16 5.52 -2.39 -0.01 1.15 16 44 H 0.17 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -62.85 358.33 5.78 -57.07 By element: Atomic # 1 Polarization: 24.57 SS G_CDS: 0.41 Total: 24.98 kcal Atomic # 6 Polarization: 16.81 SS G_CDS: 7.12 Total: 23.93 kcal Atomic # 7 Polarization: -114.74 SS G_CDS: -4.99 Total: -119.73 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.05 Total: -22.18 kcal Atomic # 9 Polarization: -8.70 SS G_CDS: 1.26 Total: -7.44 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Total: -62.85 5.78 -57.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156311043.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.543 kcal (2) G-P(sol) polarization free energy of solvation -62.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds